Wall clock time and date at job start Tue Mar 31 2020 13:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47089 * 2 1 4 4 N 1.46502 * 109.46974 * 119.99654 * 2 1 3 5 5 C 1.36937 * 119.99708 * 124.33443 * 4 2 1 6 6 H 1.07998 * 119.99950 * 152.57442 * 5 4 2 7 7 C 1.38813 * 119.99718 * 332.29410 * 5 4 2 8 8 N 1.31626 * 119.99638 * 144.10612 * 7 5 4 9 9 Si 1.86800 * 120.00390 * 324.10528 * 7 5 4 10 10 H 1.48499 * 109.47041 * 86.56764 * 9 7 5 11 11 H 1.48495 * 109.47478 * 206.56761 * 9 7 5 12 12 H 1.48504 * 109.46855 * 326.56976 * 9 7 5 13 13 C 1.46503 * 120.00290 * 304.33022 * 4 2 1 14 14 C 1.52992 * 109.47282 * 270.00113 * 13 4 2 15 15 C 1.53000 * 109.47300 * 179.97438 * 14 13 4 16 16 N 1.46497 * 109.47092 * 180.02562 * 15 14 13 17 17 C 1.34778 * 119.99754 * 180.02562 * 16 15 14 18 18 O 1.21285 * 119.99813 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00208 * 179.97438 * 17 16 15 20 20 H 1.09005 * 115.54777 * 13.71627 * 19 17 16 21 21 C 1.52992 * 117.50035 * 159.38581 * 19 17 16 22 22 C 1.52994 * 117.50136 * 228.01196 * 19 17 16 23 23 H 1.08997 * 117.50090 * 145.01893 * 22 19 17 24 24 C 1.53002 * 117.49969 * 359.97438 * 22 19 17 25 25 C 1.54267 * 110.03136 * 178.77359 * 24 22 19 26 26 C 1.54889 * 104.19383 * 217.10613 * 25 24 22 27 27 C 1.54889 * 102.74869 * 37.94485 * 26 25 24 28 28 C 1.53873 * 110.03018 * 61.60799 * 24 22 19 29 29 H 1.09006 * 109.47009 * 299.99935 * 1 2 3 30 30 H 1.08995 * 109.47104 * 60.00373 * 1 2 3 31 31 H 1.09001 * 109.47390 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47249 * 239.99869 * 2 1 3 33 33 H 1.08997 * 109.47430 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47191 * 300.00014 * 3 2 1 35 35 H 1.09006 * 109.47142 * 60.00146 * 3 2 1 36 36 H 0.97005 * 119.99775 * 179.97438 * 8 7 5 37 37 H 1.08999 * 109.46532 * 30.00750 * 13 4 2 38 38 H 1.09001 * 109.46782 * 150.00029 * 13 4 2 39 39 H 1.09004 * 109.47202 * 300.00096 * 14 13 4 40 40 H 1.09005 * 109.46887 * 59.99968 * 14 13 4 41 41 H 1.09004 * 109.47120 * 300.00206 * 15 14 13 42 42 H 1.09001 * 109.46724 * 59.99940 * 15 14 13 43 43 H 0.97002 * 120.00146 * 359.97438 * 16 15 14 44 44 H 1.09004 * 117.49889 * 214.98438 * 21 19 17 45 45 H 1.08997 * 117.50180 * 0.02562 * 21 19 17 46 46 H 1.08993 * 110.01796 * 300.21664 * 24 22 19 47 47 H 1.08999 * 110.48734 * 335.78097 * 25 24 22 48 48 H 1.08999 * 110.48894 * 98.43089 * 25 24 22 49 49 H 1.08999 * 110.75745 * 279.62939 * 26 25 24 50 50 H 1.09002 * 110.91772 * 156.33183 * 26 25 24 51 51 H 1.09006 * 110.48811 * 203.37977 * 27 26 25 52 52 H 1.09003 * 110.48794 * 80.73746 * 27 26 25 53 53 H 1.09006 * 110.03446 * 238.56951 * 28 24 22 54 54 H 1.09004 * 110.03222 * 359.97438 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8772 -1.7499 1.0726 6 1 3.5701 -1.9790 1.8686 7 6 2.8530 -2.5328 -0.0735 8 7 3.9732 -3.0274 -0.5563 9 14 1.2309 -2.8845 -0.9305 10 1 0.9275 -1.7881 -1.8849 11 1 1.3290 -4.1696 -1.6679 12 1 0.1466 -2.9752 0.0802 13 6 1.5879 -0.2477 2.5248 14 6 2.5611 0.8095 3.0501 15 6 2.1112 1.2724 4.4372 16 7 3.0428 2.2851 4.9400 17 6 2.8451 2.8399 6.1523 18 8 1.8963 2.5003 6.8271 19 6 3.8037 3.8813 6.6698 20 1 4.4860 4.3009 5.9305 21 6 3.3065 4.8098 7.7794 22 6 4.3252 3.7137 8.0983 23 1 5.3509 4.0230 8.2991 24 6 3.8332 2.5020 8.8924 25 6 4.4866 2.4853 10.2898 26 6 4.7390 0.9836 10.5731 27 6 5.1629 0.4406 9.1858 28 6 4.2632 1.2020 8.1905 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.9563 -3.5748 -1.3569 37 1 0.5875 0.1800 2.4586 38 1 1.5746 -1.0994 3.2049 39 1 3.5614 0.3816 3.1161 40 1 2.5743 1.6611 2.3698 41 1 1.1109 1.7004 4.3708 42 1 2.0976 0.4210 5.1177 43 1 3.8022 2.5559 4.4007 44 1 3.6620 5.8402 7.7704 45 1 2.2862 4.6673 8.1355 46 1 2.7479 2.5337 8.9873 47 1 5.4280 3.0346 10.2773 48 1 3.8087 2.9050 11.0330 49 1 3.8262 0.4965 10.9162 50 1 5.5408 0.8541 11.3001 51 1 4.9785 -0.6319 9.1233 52 1 6.2135 0.6597 8.9951 53 1 3.3865 0.6023 7.9455 54 1 4.8220 1.4343 7.2839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691756816.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:03 Heat of formation + Delta-G solvation = -29.487930 kcal Electronic energy + Delta-G solvation = -28178.287910 eV Core-core repulsion = 24535.873724 eV Total energy + Delta-G solvation = -3642.414186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.34121 -39.27916 -38.83293 -36.82425 -36.07467 -34.21621 -33.37216 -31.31102 -29.68340 -29.50491 -28.04971 -27.58327 -25.33794 -23.95641 -22.90931 -22.49492 -21.54582 -21.43002 -21.03987 -20.23279 -18.80699 -17.97172 -17.33318 -17.08192 -16.74686 -16.53653 -16.01419 -15.86967 -15.41812 -15.28525 -14.97326 -14.87906 -14.66282 -14.49355 -14.23934 -13.76795 -13.70768 -13.42205 -13.26154 -13.04731 -12.94895 -12.86249 -12.66967 -12.55928 -12.44990 -12.30047 -12.06711 -11.95736 -11.92048 -11.89926 -11.59371 -11.54176 -11.45844 -11.35502 -11.11074 -11.08572 -10.88518 -10.71869 -10.50167 -10.01691 -8.89633 -8.23019 -5.36798 1.32707 1.43213 1.51216 1.53178 2.22790 2.44555 2.94607 2.95212 3.39444 3.56272 3.69870 3.76405 3.93305 4.00338 4.05064 4.08636 4.16492 4.24446 4.28086 4.37762 4.52291 4.53536 4.57214 4.59729 4.62341 4.64654 4.72066 4.78064 4.82412 4.83742 4.86836 4.88610 4.92529 4.95575 4.98624 5.05635 5.06676 5.10581 5.14222 5.22207 5.27753 5.31545 5.36315 5.39227 5.46451 5.47749 5.57206 5.57677 5.60477 5.92563 6.15447 6.62635 7.00886 7.32400 7.72542 8.11001 8.96259 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018260 B = 0.002571 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.079206 B =10886.526128 C =11771.087804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 C -0.148 4.148 4 N -0.605 5.605 5 C -0.257 4.257 6 H 0.048 0.952 7 C -0.014 4.014 8 N -0.930 5.930 9 Si 0.910 3.090 10 H -0.264 1.264 11 H -0.316 1.316 12 H -0.271 1.271 13 C 0.147 3.853 14 C -0.133 4.133 15 C 0.134 3.866 16 N -0.719 5.719 17 C 0.538 3.462 18 O -0.580 6.580 19 C -0.202 4.202 20 H 0.145 0.855 21 C -0.138 4.138 22 C -0.104 4.104 23 H 0.138 0.862 24 C -0.066 4.066 25 C -0.110 4.110 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.114 4.114 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.261 0.739 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.411 0.589 44 H 0.130 0.870 45 H 0.085 0.915 46 H 0.058 0.942 47 H 0.083 0.917 48 H 0.068 0.932 49 H 0.057 0.943 50 H 0.081 0.919 51 H 0.055 0.945 52 H 0.075 0.925 53 H 0.032 0.968 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.072 18.269 17.595 25.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.035 3.965 3 C -0.207 4.207 4 N -0.327 5.327 5 C -0.386 4.386 6 H 0.066 0.934 7 C -0.211 4.211 8 N -0.574 5.574 9 Si 0.739 3.261 10 H -0.190 1.190 11 H -0.245 1.245 12 H -0.197 1.197 13 C 0.021 3.979 14 C -0.173 4.173 15 C 0.009 3.991 16 N -0.370 5.370 17 C 0.327 3.673 18 O -0.460 6.460 19 C -0.223 4.223 20 H 0.163 0.837 21 C -0.175 4.175 22 C -0.123 4.123 23 H 0.155 0.845 24 C -0.084 4.084 25 C -0.147 4.147 26 C -0.162 4.162 27 C -0.163 4.163 28 C -0.152 4.152 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.247 0.753 44 H 0.148 0.852 45 H 0.103 0.897 46 H 0.077 0.923 47 H 0.102 0.898 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.099 0.901 51 H 0.074 0.926 52 H 0.094 0.906 53 H 0.051 0.949 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.454 17.907 17.935 25.348 hybrid contribution -0.388 -1.121 -1.226 1.706 sum 0.066 16.786 16.709 23.685 Atomic orbital electron populations 1.22389 0.96677 1.00891 1.02839 1.20825 0.93001 0.93426 0.89238 1.22227 1.00511 0.95982 1.01978 1.44320 1.54022 1.32964 1.01380 1.18672 1.10356 1.06098 1.03472 0.93446 1.25702 0.98437 0.98685 0.98273 1.70186 1.27129 1.37603 1.22503 0.86529 0.84313 0.76528 0.78745 1.19006 1.24489 1.19670 1.20813 0.95953 0.95553 0.85618 1.22312 1.00391 1.00180 0.94459 1.21123 0.92940 0.90435 0.94562 1.45949 1.30429 1.41753 1.18860 1.20098 0.85100 0.81587 0.80537 1.90653 1.33146 1.64202 1.58028 1.22415 1.03398 1.01660 0.94788 0.83748 1.23154 0.99527 0.96479 0.98362 1.22609 1.00053 0.97416 0.92198 0.84478 1.21372 0.99572 0.92494 0.95003 1.22398 1.01035 0.96461 0.94850 1.22506 1.01212 0.95854 0.96636 1.22379 0.99673 0.99091 0.95134 1.22110 0.98299 0.96182 0.98560 0.90794 0.90905 0.94884 0.93524 0.94116 0.91667 0.91262 0.93017 0.91815 0.94198 0.93203 0.90202 0.91840 0.93426 0.75283 0.85236 0.89673 0.92343 0.89806 0.91329 0.92467 0.90075 0.92603 0.90637 0.94919 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.85 8.36 71.98 0.60 -5.24 16 2 C 0.14 5.69 2.21 44.99 0.10 5.79 16 3 C -0.15 -4.81 8.41 71.98 0.61 -4.20 16 4 N -0.60 -27.10 2.15 -678.04 -1.46 -28.55 16 5 C -0.26 -14.20 9.86 84.03 0.83 -13.37 16 6 H 0.05 2.88 8.06 -2.91 -0.02 2.85 16 7 C -0.01 -0.79 4.86 84.86 0.41 -0.38 16 8 N -0.93 -57.47 13.97 21.65 0.30 -57.17 16 9 Si 0.91 45.42 23.70 68.60 1.63 47.04 16 10 H -0.26 -12.28 6.26 99.48 0.62 -11.65 16 11 H -0.32 -16.24 7.11 99.48 0.71 -15.54 16 12 H -0.27 -13.27 6.58 99.48 0.65 -12.62 16 13 C 0.15 5.36 5.20 86.38 0.45 5.80 16 14 C -0.13 -4.06 5.39 30.59 0.16 -3.90 16 15 C 0.13 3.68 5.67 86.38 0.49 4.17 16 16 N -0.72 -16.83 5.56 -463.05 -2.57 -19.41 16 17 C 0.54 13.38 5.71 87.66 0.50 13.88 16 18 O -0.58 -18.78 14.14 -3.05 -0.04 -18.83 16 19 C -0.20 -3.43 5.90 -11.54 -0.07 -3.50 16 20 H 0.14 1.67 8.14 -2.38 -0.02 1.65 16 21 C -0.14 -2.07 9.70 30.59 0.30 -1.77 16 22 C -0.10 -1.59 4.97 -10.80 -0.05 -1.64 16 23 H 0.14 1.43 7.82 -2.39 -0.02 1.41 16 24 C -0.07 -1.29 2.28 -10.07 -0.02 -1.31 16 25 C -0.11 -1.63 6.36 31.67 0.20 -1.43 16 26 C -0.12 -1.97 6.91 31.88 0.22 -1.75 16 27 C -0.13 -2.35 6.83 31.67 0.22 -2.13 16 28 C -0.11 -2.58 4.90 31.32 0.15 -2.43 16 29 H 0.07 2.21 6.53 -2.38 -0.02 2.19 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.03 1.26 5.26 -2.39 -0.01 1.25 16 32 H 0.05 2.20 4.51 -2.39 -0.01 2.19 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 1.95 6.02 -2.38 -0.01 1.93 16 36 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 37 H 0.06 2.06 6.21 -2.39 -0.01 2.04 16 38 H 0.04 1.56 8.04 -2.39 -0.02 1.54 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.08 2.26 5.42 -2.38 -0.01 2.24 16 41 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.41 7.70 8.47 -92.71 -0.79 6.91 16 44 H 0.13 1.19 8.14 -2.38 -0.02 1.17 16 45 H 0.08 1.67 7.75 -2.39 -0.02 1.65 16 46 H 0.06 1.50 6.78 -2.39 -0.02 1.48 16 47 H 0.08 0.96 7.65 -2.39 -0.02 0.94 16 48 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 52 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 53 H 0.03 0.93 7.98 -2.38 -0.02 0.91 16 54 H 0.06 1.31 7.04 -2.39 -0.02 1.29 16 Total: -1.00 -69.36 400.69 2.90 -66.47 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -0.06 Total: 23.86 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 5.10 Total: -13.41 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -3.73 Total: -105.13 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.04 Total: -18.83 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.63 Total: 47.04 kcal Total: -69.36 2.90 -66.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691756816.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.979 kcal (2) G-P(sol) polarization free energy of solvation -69.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds