Wall clock time and date at job start Tue Mar 31 2020 13:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47208 * 2 1 4 4 N 1.46506 * 109.46759 * 119.99922 * 2 1 3 5 5 C 1.36940 * 119.99621 * 121.20028 * 4 2 1 6 6 H 1.08001 * 119.99394 * 145.36850 * 5 4 2 7 7 C 1.38808 * 120.00292 * 325.36872 * 5 4 2 8 8 N 1.31620 * 120.00040 * 342.47616 * 7 5 4 9 9 Si 1.86797 * 119.99959 * 162.48218 * 7 5 4 10 10 H 1.48496 * 109.47514 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47147 * 119.99944 * 9 7 5 12 12 H 1.48504 * 109.47072 * 239.99572 * 9 7 5 13 13 C 1.46495 * 119.99895 * 301.19763 * 4 2 1 14 14 C 1.52998 * 109.47012 * 90.00532 * 13 4 2 15 15 C 1.53002 * 109.47420 * 179.97438 * 14 13 4 16 16 N 1.46498 * 109.47595 * 179.97438 * 15 14 13 17 17 C 1.34774 * 120.00243 * 179.97438 * 16 15 14 18 18 O 1.21284 * 120.00092 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00034 * 179.97438 * 17 16 15 20 20 H 1.08998 * 115.56229 * 327.69405 * 19 17 16 21 21 C 1.52998 * 117.49928 * 181.99926 * 19 17 16 22 22 C 1.52997 * 60.00285 * 252.51096 * 21 19 17 23 23 H 1.08995 * 117.52603 * 252.52055 * 22 21 19 24 24 C 1.53005 * 117.49745 * 107.48756 * 22 21 19 25 25 C 1.53873 * 110.03063 * 231.37884 * 24 22 21 26 26 C 1.54266 * 106.63982 * 240.68789 * 25 24 22 27 27 C 1.54966 * 104.16223 * 336.44721 * 26 25 24 28 28 C 1.54265 * 110.03473 * 114.21158 * 24 22 21 29 29 H 1.09003 * 109.46950 * 300.00310 * 1 2 3 30 30 H 1.09001 * 109.47246 * 59.99682 * 1 2 3 31 31 H 1.09004 * 109.47355 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46950 * 239.99689 * 2 1 3 33 33 H 1.09004 * 109.46695 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47163 * 299.99684 * 3 2 1 35 35 H 1.08994 * 109.47249 * 60.00096 * 3 2 1 36 36 H 0.96993 * 120.00076 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.47817 * 330.00002 * 13 4 2 38 38 H 1.09001 * 109.46931 * 210.00024 * 13 4 2 39 39 H 1.09004 * 109.47402 * 59.99754 * 14 13 4 40 40 H 1.09001 * 109.47381 * 299.99584 * 14 13 4 41 41 H 1.09001 * 109.47138 * 59.99138 * 15 14 13 42 42 H 1.09001 * 109.46863 * 299.99700 * 15 14 13 43 43 H 0.97006 * 119.99351 * 359.97438 * 16 15 14 44 44 H 1.09004 * 117.49777 * 145.02551 * 21 19 17 45 45 H 1.09003 * 117.50036 * 0.02562 * 21 19 17 46 46 H 1.09001 * 110.05355 * 352.79087 * 24 22 21 47 47 H 1.09000 * 110.03701 * 359.97438 * 25 24 22 48 48 H 1.09007 * 110.03468 * 121.38496 * 25 24 22 49 49 H 1.09005 * 110.48997 * 95.09350 * 26 25 24 50 50 H 1.09002 * 110.49127 * 217.73852 * 26 25 24 51 51 H 1.08998 * 110.71852 * 279.57403 * 27 26 25 52 52 H 1.08994 * 110.76909 * 156.21639 * 27 26 25 53 53 H 1.09003 * 110.48590 * 261.57742 * 28 24 22 54 54 H 1.09001 * 110.48278 * 24.08121 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.8257 -1.7895 1.0707 6 1 3.6069 -1.9709 1.7940 7 6 2.6400 -2.6702 0.0140 8 7 1.5090 -2.6614 -0.6591 9 14 3.9954 -3.8678 -0.4529 10 1 5.1576 -3.6774 0.4517 11 1 3.4918 -5.2591 -0.3264 12 1 4.4146 -3.6187 -1.8556 13 6 1.6428 -0.2056 2.5266 14 6 0.3488 -0.8895 2.9723 15 6 -0.0431 -0.3835 4.3620 16 7 -1.2825 -1.0379 4.7885 17 6 -1.8203 -0.7455 5.9893 18 8 -1.2784 0.0598 6.7165 19 6 -3.0954 -1.4182 6.4277 20 1 -3.7962 -1.6636 5.6297 21 6 -3.6807 -1.0094 7.7809 22 6 -3.0153 -2.3773 7.6172 23 1 -3.6630 -3.2538 7.6015 24 6 -1.6466 -2.5798 8.2704 25 6 -0.6488 -3.1386 7.2409 26 6 -0.1786 -4.5060 7.7786 27 6 -0.4189 -4.4155 9.3068 28 6 -1.7491 -3.6273 9.3983 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6767 1.9563 0.8899 36 1 1.3794 -3.2765 -1.3977 37 1 1.4898 0.8730 2.4904 38 1 2.4383 -0.4361 3.2352 39 1 0.5017 -1.9682 3.0086 40 1 -0.4468 -0.6591 2.2637 41 1 -0.1959 0.6952 4.3262 42 1 0.7525 -0.6144 5.0704 43 1 -1.7160 -1.6817 4.2067 44 1 -4.7666 -0.9858 7.8732 45 1 -3.1436 -0.2534 8.3539 46 1 -1.2800 -1.6346 8.6707 47 1 -1.1397 -3.2660 6.2761 48 1 0.2018 -2.4643 7.1411 49 1 -0.7731 -5.3109 7.3462 50 1 0.8800 -4.6560 7.5663 51 1 0.3888 -3.8678 9.7923 52 1 -0.5283 -5.4094 9.7404 53 1 -1.8360 -3.1367 10.3678 54 1 -2.5990 -4.2884 9.2288 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691756817.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:08 Heat of formation + Delta-G solvation = -36.890190 kcal Electronic energy + Delta-G solvation = -28451.135810 eV Core-core repulsion = 24808.400638 eV Total energy + Delta-G solvation = -3642.735172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.34736 -39.22015 -38.60776 -36.81588 -36.06280 -33.89027 -33.19177 -30.97609 -29.69326 -29.52192 -27.72513 -27.34247 -25.43592 -24.00068 -22.91513 -22.41832 -21.53555 -21.30245 -20.83422 -20.17309 -18.72493 -17.98231 -17.09821 -16.88968 -16.60292 -16.54641 -16.12187 -15.76565 -15.53177 -15.25993 -14.78270 -14.66096 -14.36520 -14.25325 -14.22035 -13.66626 -13.40045 -13.23184 -13.10324 -12.96479 -12.89566 -12.77776 -12.66794 -12.58972 -12.37198 -12.12441 -12.00957 -11.97034 -11.93273 -11.83441 -11.61446 -11.54263 -11.45102 -11.20303 -11.14331 -11.08183 -10.97083 -10.72697 -10.43547 -10.02960 -8.51100 -7.81973 -5.32207 1.44906 1.49495 1.54607 1.57687 2.22672 2.53830 2.88118 3.32242 3.53744 3.64966 3.66974 3.73688 3.91014 3.99724 4.04679 4.15446 4.24921 4.32897 4.48509 4.50405 4.54035 4.55808 4.62168 4.69527 4.71075 4.74899 4.80071 4.84803 4.87975 4.90367 4.93155 4.94174 4.98680 4.99988 5.05770 5.10016 5.13658 5.20127 5.21755 5.29956 5.36200 5.37211 5.38786 5.44293 5.48115 5.53485 5.59432 5.73019 5.80993 6.00988 6.52015 6.60562 7.25970 7.29342 7.95852 8.46104 9.21013 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013241 B = 0.003052 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.165118 B = 9173.341837 C =10564.391834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.177 3.823 3 C -0.154 4.154 4 N -0.595 5.595 5 C -0.267 4.267 6 H 0.052 0.948 7 C -0.030 4.030 8 N -0.910 5.910 9 Si 0.950 3.050 10 H -0.274 1.274 11 H -0.292 1.292 12 H -0.291 1.291 13 C 0.151 3.849 14 C -0.130 4.130 15 C 0.135 3.865 16 N -0.717 5.717 17 C 0.542 3.458 18 O -0.586 6.586 19 C -0.204 4.204 20 H 0.146 0.854 21 C -0.140 4.140 22 C -0.103 4.103 23 H 0.140 0.860 24 C -0.068 4.068 25 C -0.118 4.118 26 C -0.125 4.125 27 C -0.124 4.124 28 C -0.109 4.109 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.248 0.752 37 H 0.054 0.946 38 H 0.036 0.964 39 H 0.043 0.957 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.409 0.591 44 H 0.129 0.871 45 H 0.085 0.915 46 H 0.052 0.948 47 H 0.062 0.938 48 H 0.031 0.969 49 H 0.075 0.925 50 H 0.055 0.945 51 H 0.058 0.942 52 H 0.081 0.919 53 H 0.070 0.930 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.903 -0.717 15.805 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.071 3.929 3 C -0.213 4.213 4 N -0.316 5.316 5 C -0.398 4.398 6 H 0.069 0.931 7 C -0.227 4.227 8 N -0.554 5.554 9 Si 0.779 3.221 10 H -0.199 1.199 11 H -0.219 1.219 12 H -0.218 1.218 13 C 0.025 3.975 14 C -0.170 4.170 15 C 0.011 3.989 16 N -0.368 5.368 17 C 0.330 3.670 18 O -0.467 6.467 19 C -0.224 4.224 20 H 0.164 0.836 21 C -0.177 4.177 22 C -0.121 4.121 23 H 0.158 0.842 24 C -0.086 4.086 25 C -0.155 4.155 26 C -0.162 4.162 27 C -0.162 4.162 28 C -0.146 4.146 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.245 0.755 44 H 0.147 0.853 45 H 0.103 0.897 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.050 0.950 49 H 0.093 0.907 50 H 0.073 0.927 51 H 0.076 0.924 52 H 0.100 0.900 53 H 0.088 0.912 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.517 -0.220 16.152 19.839 hybrid contribution 0.849 -0.872 -1.093 1.636 sum -10.668 -1.091 15.059 18.487 Atomic orbital electron populations 1.22031 0.97560 1.00404 0.99140 1.20197 0.92488 0.90021 0.90203 1.22220 1.00143 0.97921 1.00974 1.44085 1.56686 1.30525 1.00323 1.19285 1.08388 1.00900 1.11229 0.93074 1.25676 0.97628 0.98459 1.00969 1.70143 1.23275 1.39045 1.22899 0.85494 0.80128 0.78902 0.77559 1.19872 1.21949 1.21824 1.20782 0.93502 0.96366 0.86888 1.22343 1.00294 1.00424 0.93967 1.21174 0.85595 0.96718 0.95447 1.46006 1.26455 1.45322 1.18974 1.20094 0.85495 0.80867 0.80501 1.90645 1.64426 1.36903 1.54710 1.22421 0.97430 1.07286 0.95300 0.83633 1.23149 1.01586 0.97635 0.95333 1.22637 0.98098 0.94819 0.96592 0.84232 1.21397 0.92868 0.98809 0.95562 1.22169 0.97802 0.96724 0.98854 1.22381 1.00697 0.96665 0.96485 1.22521 0.97491 1.00786 0.95353 1.22390 0.98152 0.96624 0.97431 0.93592 0.93856 0.94000 0.92988 0.94387 0.92223 0.92883 0.94302 0.92730 0.94554 0.93777 0.91589 0.92236 0.93256 0.75489 0.85255 0.89670 0.92939 0.91940 0.94980 0.90659 0.92664 0.92368 0.90010 0.91170 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 7.97 71.98 0.57 -4.83 16 2 C 0.18 7.94 2.39 44.99 0.11 8.05 16 3 C -0.15 -5.70 9.19 71.98 0.66 -5.03 16 4 N -0.60 -28.26 2.38 -678.04 -1.61 -29.87 16 5 C -0.27 -14.27 9.51 84.03 0.80 -13.47 16 6 H 0.05 2.78 7.89 -2.91 -0.02 2.75 16 7 C -0.03 -1.59 4.84 84.86 0.41 -1.18 16 8 N -0.91 -50.44 10.79 21.65 0.23 -50.21 16 9 Si 0.95 43.97 29.59 68.60 2.03 46.00 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 13 C 0.15 6.04 5.05 86.38 0.44 6.47 16 14 C -0.13 -4.66 5.37 30.59 0.16 -4.50 16 15 C 0.14 4.24 5.67 86.38 0.49 4.73 16 16 N -0.72 -19.44 5.39 -463.06 -2.49 -21.94 16 17 C 0.54 15.05 5.10 87.66 0.45 15.49 16 18 O -0.59 -20.81 15.65 -3.04 -0.05 -20.86 16 19 C -0.20 -3.95 5.88 -11.54 -0.07 -4.02 16 20 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 21 C -0.14 -2.39 9.70 30.59 0.30 -2.10 16 22 C -0.10 -1.71 5.01 -10.79 -0.05 -1.77 16 23 H 0.14 1.60 7.80 -2.39 -0.02 1.58 16 24 C -0.07 -1.39 2.48 -10.07 -0.03 -1.42 16 25 C -0.12 -2.80 5.03 31.32 0.16 -2.64 16 26 C -0.12 -2.50 6.84 31.70 0.22 -2.29 16 27 C -0.12 -2.06 6.91 31.91 0.22 -1.84 16 28 C -0.11 -1.68 6.36 31.67 0.20 -1.48 16 29 H 0.05 1.68 6.22 -2.39 -0.01 1.67 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.04 1.94 7.45 -2.39 -0.02 1.93 16 32 H 0.05 2.74 6.09 -2.39 -0.01 2.72 16 33 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 1.80 6.71 -2.39 -0.02 1.78 16 36 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 37 H 0.05 1.99 6.49 -2.39 -0.02 1.97 16 38 H 0.04 1.48 8.04 -2.39 -0.02 1.46 16 39 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 2.41 5.45 -2.39 -0.01 2.39 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.41 9.60 8.47 -92.70 -0.79 8.81 16 44 H 0.13 1.45 8.14 -2.38 -0.02 1.43 16 45 H 0.08 1.87 7.59 -2.39 -0.02 1.86 16 46 H 0.05 1.38 7.46 -2.39 -0.02 1.36 16 47 H 0.06 1.50 6.77 -2.39 -0.02 1.48 16 48 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 49 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 50 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 53 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 54 H 0.08 1.03 7.63 -2.39 -0.02 1.01 16 Total: -1.00 -63.55 410.77 3.21 -60.34 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.07 Total: 28.37 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 5.04 Total: -11.83 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -3.87 Total: -102.02 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.05 Total: -20.86 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -63.55 3.21 -60.34 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691756817.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.446 kcal (2) G-P(sol) polarization free energy of solvation -63.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds