Wall clock time and date at job start Tue Mar 31 2020 13:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46873 * 2 1 4 4 N 1.46498 * 109.47092 * 240.00314 * 2 1 3 5 5 C 1.36935 * 120.00253 * 62.31853 * 4 2 1 6 6 H 1.08003 * 120.00196 * 325.97905 * 5 4 2 7 7 C 1.38812 * 120.00021 * 145.97348 * 5 4 2 8 8 N 1.31620 * 119.99797 * 335.36280 * 7 5 4 9 9 Si 1.86803 * 120.00072 * 155.35912 * 7 5 4 10 10 H 1.48501 * 109.46803 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46793 * 120.00280 * 9 7 5 12 12 H 1.48497 * 109.47089 * 240.00238 * 9 7 5 13 13 C 1.46499 * 119.99919 * 242.32011 * 4 2 1 14 14 C 1.52997 * 109.47152 * 89.99824 * 13 4 2 15 15 C 1.52997 * 109.47525 * 180.02562 * 14 13 4 16 16 N 1.46497 * 109.47885 * 180.02562 * 15 14 13 17 17 C 1.34769 * 120.00622 * 180.02562 * 16 15 14 18 18 O 1.21286 * 119.99761 * 0.02562 * 17 16 15 19 19 C 1.50705 * 120.00370 * 180.02562 * 17 16 15 20 20 H 1.09000 * 115.54525 * 34.27663 * 19 17 16 21 21 C 1.52998 * 117.49889 * 248.61160 * 19 17 16 22 22 C 1.52997 * 117.49866 * 179.97438 * 19 17 16 23 23 H 1.08997 * 117.49877 * 0.02562 * 22 19 17 24 24 C 1.52998 * 117.49775 * 214.97551 * 22 19 17 25 25 C 1.54271 * 110.03218 * 177.90882 * 24 22 19 26 26 C 1.54963 * 104.16250 * 217.13924 * 25 24 22 27 27 C 1.54893 * 102.77328 * 37.89014 * 26 25 24 28 28 C 1.53882 * 110.03006 * 60.69781 * 24 22 19 29 29 H 1.09002 * 109.47390 * 56.55936 * 1 2 3 30 30 H 1.09000 * 109.47535 * 296.56381 * 1 2 3 31 31 H 1.08997 * 109.47137 * 176.55945 * 1 2 3 32 32 H 1.08993 * 109.47029 * 119.99871 * 2 1 3 33 33 H 1.09001 * 109.47312 * 61.28142 * 3 2 1 34 34 H 1.09001 * 109.47221 * 181.28237 * 3 2 1 35 35 H 1.09002 * 109.46931 * 301.27975 * 3 2 1 36 36 H 0.97007 * 120.00043 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.47481 * 209.99966 * 13 4 2 38 38 H 1.08998 * 109.46981 * 330.00306 * 13 4 2 39 39 H 1.09001 * 109.47753 * 300.00228 * 14 13 4 40 40 H 1.09000 * 109.47220 * 60.00071 * 14 13 4 41 41 H 1.09006 * 109.47157 * 300.00583 * 15 14 13 42 42 H 1.09010 * 109.46905 * 59.99905 * 15 14 13 43 43 H 0.97005 * 119.99466 * 0.02562 * 16 15 14 44 44 H 1.08999 * 117.49818 * 359.97438 * 21 19 17 45 45 H 1.08997 * 117.50010 * 145.00048 * 21 19 17 46 46 H 1.08998 * 110.01944 * 299.30542 * 24 22 19 47 47 H 1.09001 * 110.48617 * 335.78647 * 25 24 22 48 48 H 1.08995 * 110.48062 * 98.43044 * 25 24 22 49 49 H 1.08994 * 110.72008 * 279.57744 * 26 25 24 50 50 H 1.08997 * 110.76393 * 156.22073 * 26 25 24 51 51 H 1.09004 * 110.48534 * 203.40197 * 27 26 25 52 52 H 1.08999 * 110.48994 * 80.76457 * 27 26 25 53 53 H 1.08996 * 110.02959 * 238.56888 * 28 24 22 54 54 H 1.09004 * 110.03045 * 359.97438 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.7271 -0.1956 -2.4393 6 1 0.7818 0.2955 -2.6173 7 6 2.6470 -0.3251 -3.4708 8 7 3.9277 -0.4578 -3.1977 9 14 2.0673 -0.3109 -5.2466 10 1 0.5915 -0.1497 -5.2841 11 1 2.7068 0.8192 -5.9670 12 1 2.4427 -1.5904 -5.9000 13 6 2.8181 -1.9106 -1.0624 14 6 1.8922 -3.1285 -1.0496 15 6 2.7274 -4.4028 -0.9092 16 7 1.8409 -5.5690 -0.8975 17 6 2.3586 -6.8079 -0.7814 18 8 3.5584 -6.9573 -0.6860 19 6 1.4467 -8.0077 -0.7699 20 1 0.5573 -7.9281 -1.3950 21 6 1.3217 -8.7876 0.5404 22 6 2.0954 -9.3868 -0.6360 23 1 3.1817 -9.4264 -0.5558 24 6 1.4459 -10.5491 -1.3898 25 6 2.2644 -11.8395 -1.1778 26 6 2.1914 -12.5638 -2.5458 27 6 2.2767 -11.3941 -3.5576 28 6 1.4533 -10.2662 -2.9023 29 1 -0.3634 0.5663 -0.8575 30 1 -0.3634 0.4596 0.9192 31 1 -0.3633 -1.0258 -0.0617 32 1 1.8933 -0.5138 0.8899 33 1 1.6955 1.9497 0.9012 34 1 3.1297 1.4427 -0.0230 35 1 1.6579 1.9629 -0.8783 36 1 4.5705 -0.5487 -3.9185 37 1 3.5075 -1.9872 -1.9032 38 1 3.3834 -1.8742 -0.1312 39 1 1.2028 -3.0521 -0.2088 40 1 1.3269 -3.1650 -1.9808 41 1 3.4172 -4.4795 -1.7498 42 1 3.2924 -4.3660 0.0222 43 1 0.8813 -5.4495 -0.9734 44 1 1.8994 -8.4332 1.3941 45 1 0.3502 -9.2212 0.7774 46 1 0.4232 -10.6943 -1.0421 47 1 3.2979 -11.5991 -0.9284 48 1 1.8150 -12.4522 -0.3964 49 1 1.2463 -13.0966 -2.6501 50 1 3.0348 -13.2433 -2.6689 51 1 1.8365 -11.6826 -4.5122 52 1 3.3121 -11.0815 -3.6930 53 1 0.4342 -10.2749 -3.2887 54 1 1.9192 -9.3006 -3.0993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691756818.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:12 Heat of formation + Delta-G solvation = -42.076106 kcal Electronic energy + Delta-G solvation = -27412.489574 eV Core-core repulsion = 23769.529523 eV Total energy + Delta-G solvation = -3642.960050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.17736 -39.43364 -38.51982 -36.78884 -36.17394 -34.30651 -33.13918 -30.63347 -29.66855 -29.47152 -27.73720 -27.38681 -25.62140 -23.97015 -22.93594 -22.40197 -21.63568 -21.31402 -20.98084 -20.20269 -18.28102 -18.19774 -17.06864 -16.96649 -16.57061 -16.53710 -16.21632 -15.89163 -15.65997 -15.06191 -15.03160 -14.63999 -14.52168 -14.19613 -14.09386 -13.52575 -13.37652 -13.25749 -13.17491 -13.13272 -12.85344 -12.74214 -12.64499 -12.49936 -12.35524 -12.21518 -12.12866 -11.96139 -11.90048 -11.87948 -11.70692 -11.51269 -11.33369 -11.31903 -11.26315 -11.14509 -10.98890 -10.75597 -10.45796 -10.12149 -8.54177 -7.77784 -5.33019 1.43243 1.47422 1.48392 1.56381 2.14246 2.53681 2.83601 3.27966 3.55304 3.61778 3.66614 3.75696 3.85691 4.00865 4.07350 4.15404 4.23750 4.32113 4.35519 4.51071 4.53650 4.61153 4.61899 4.63989 4.71878 4.74018 4.79807 4.83132 4.86436 4.87536 4.96305 4.98033 5.01108 5.05374 5.09281 5.09661 5.15398 5.20536 5.22762 5.23922 5.33010 5.38609 5.44289 5.48175 5.49314 5.57121 5.62176 5.68571 5.76110 5.89706 6.51351 6.56058 7.22065 7.23890 7.95397 8.45696 9.18390 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.015381 B = 0.002382 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.940215 B =11751.827411 C =12846.359631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.151 3.849 3 C -0.139 4.139 4 N -0.593 5.593 5 C -0.240 4.240 6 H 0.059 0.941 7 C -0.042 4.042 8 N -0.917 5.917 9 Si 0.943 3.057 10 H -0.266 1.266 11 H -0.297 1.297 12 H -0.295 1.295 13 C 0.147 3.853 14 C -0.119 4.119 15 C 0.133 3.867 16 N -0.712 5.712 17 C 0.531 3.469 18 O -0.593 6.593 19 C -0.192 4.192 20 H 0.146 0.854 21 C -0.130 4.130 22 C -0.113 4.113 23 H 0.088 0.912 24 C -0.056 4.056 25 C -0.118 4.118 26 C -0.122 4.122 27 C -0.130 4.130 28 C -0.123 4.123 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.023 0.977 35 H 0.035 0.965 36 H 0.247 0.753 37 H 0.063 0.937 38 H 0.025 0.975 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.039 0.961 42 H 0.057 0.943 43 H 0.415 0.585 44 H 0.088 0.912 45 H 0.135 0.865 46 H 0.094 0.906 47 H 0.055 0.945 48 H 0.080 0.920 49 H 0.078 0.922 50 H 0.068 0.932 51 H 0.070 0.930 52 H 0.050 0.950 53 H 0.075 0.925 54 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.308 -21.269 6.712 24.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.045 3.955 3 C -0.197 4.197 4 N -0.314 5.314 5 C -0.371 4.371 6 H 0.076 0.924 7 C -0.238 4.238 8 N -0.563 5.563 9 Si 0.773 3.227 10 H -0.190 1.190 11 H -0.224 1.224 12 H -0.222 1.222 13 C 0.020 3.980 14 C -0.160 4.160 15 C 0.009 3.991 16 N -0.363 5.363 17 C 0.320 3.680 18 O -0.474 6.474 19 C -0.213 4.213 20 H 0.164 0.836 21 C -0.167 4.167 22 C -0.132 4.132 23 H 0.107 0.893 24 C -0.074 4.074 25 C -0.156 4.156 26 C -0.159 4.159 27 C -0.168 4.168 28 C -0.161 4.161 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.043 0.957 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.251 0.749 44 H 0.106 0.894 45 H 0.153 0.847 46 H 0.112 0.888 47 H 0.074 0.926 48 H 0.098 0.902 49 H 0.097 0.903 50 H 0.086 0.914 51 H 0.089 0.911 52 H 0.069 0.931 53 H 0.094 0.906 54 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.343 -21.314 6.689 24.214 hybrid contribution 0.217 0.723 -1.389 1.581 sum -9.126 -20.592 5.299 23.138 Atomic orbital electron populations 1.22027 0.96382 1.00916 1.00680 1.20677 0.93807 0.92026 0.88990 1.21987 0.99290 0.98191 1.00273 1.44142 1.61518 1.24233 1.01491 1.19102 0.97628 1.33397 0.86964 0.92358 1.25644 0.94584 1.02203 1.01407 1.70161 1.00853 1.53720 1.31519 0.85577 0.78445 0.76516 0.82174 1.19009 1.22439 1.22181 1.20740 0.93179 0.84479 0.99644 1.22099 0.99064 0.93253 1.01536 1.21118 0.92922 0.84660 1.00442 1.45949 1.11482 1.05261 1.73598 1.20412 0.88256 0.84700 0.74663 1.90668 1.17870 1.86798 1.52100 1.22283 1.02323 0.90464 1.06256 0.83624 1.23205 1.03338 1.00109 0.90070 1.22502 0.98711 0.91098 1.00853 0.89350 1.21421 0.99660 0.92286 0.94046 1.22448 0.99770 0.95406 0.97939 1.22516 1.02341 0.96977 0.94106 1.22388 0.99633 0.95753 0.98982 1.22238 1.00700 0.98342 0.94813 0.94441 0.91454 0.93339 0.92315 0.91531 0.95781 0.94544 0.94402 0.91957 0.95654 0.91229 0.92882 0.94278 0.92456 0.74873 0.89366 0.84655 0.88761 0.92583 0.90171 0.90339 0.91370 0.91099 0.93083 0.90597 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 9.14 71.98 0.66 -4.03 16 2 C 0.15 5.90 3.36 44.99 0.15 6.05 16 3 C -0.14 -5.40 9.10 71.98 0.66 -4.75 16 4 N -0.59 -27.80 2.39 -678.06 -1.62 -29.42 16 5 C -0.24 -12.53 8.18 84.03 0.69 -11.84 16 6 H 0.06 3.05 7.03 -2.91 -0.02 3.03 16 7 C -0.04 -2.28 4.90 84.86 0.42 -1.86 16 8 N -0.92 -53.51 11.43 21.65 0.25 -53.27 16 9 Si 0.94 44.41 29.62 68.60 2.03 46.45 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 12 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 13 C 0.15 6.63 5.28 86.38 0.46 7.09 16 14 C -0.12 -4.32 5.65 30.59 0.17 -4.14 16 15 C 0.13 4.60 5.67 86.38 0.49 5.09 16 16 N -0.71 -19.89 5.56 -463.05 -2.57 -22.46 16 17 C 0.53 15.75 7.61 87.66 0.67 16.42 16 18 O -0.59 -23.18 16.26 -3.05 -0.05 -23.23 16 19 C -0.19 -3.83 5.29 -11.54 -0.06 -3.89 16 20 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 21 C -0.13 -2.04 9.89 30.60 0.30 -1.74 16 22 C -0.11 -2.14 4.50 -10.79 -0.05 -2.19 16 23 H 0.09 2.23 7.34 -2.39 -0.02 2.21 16 24 C -0.06 -0.79 3.10 -10.07 -0.03 -0.82 16 25 C -0.12 -1.58 6.37 31.70 0.20 -1.37 16 26 C -0.12 -1.51 6.91 31.91 0.22 -1.29 16 27 C -0.13 -1.98 6.83 31.67 0.22 -1.77 16 28 C -0.12 -1.97 6.25 31.32 0.20 -1.77 16 29 H 0.04 1.34 7.20 -2.39 -0.02 1.33 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 2.14 7.78 -2.39 -0.02 2.12 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.04 1.53 7.65 -2.39 -0.02 1.51 16 36 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 37 H 0.06 3.34 5.39 -2.39 -0.01 3.33 16 38 H 0.03 1.11 7.90 -2.39 -0.02 1.09 16 39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.41 8.95 8.47 -92.70 -0.79 8.16 16 44 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.14 1.27 8.06 -2.39 -0.02 1.26 16 46 H 0.09 0.99 7.93 -2.39 -0.02 0.97 16 47 H 0.06 0.90 7.64 -2.39 -0.02 0.88 16 48 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 52 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 53 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 54 H 0.05 0.96 7.35 -2.38 -0.02 0.95 16 Total: -1.00 -66.86 422.94 3.44 -63.42 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.06 Total: 25.32 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 5.35 Total: -6.82 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -3.94 Total: -105.14 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.05 Total: -23.23 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.45 kcal Total: -66.86 3.44 -63.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691756818.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.341 kcal (2) G-P(sol) polarization free energy of solvation -66.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds