Wall clock time and date at job start Tue Mar 31 2020 13:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47025 * 2 1 4 4 N 1.46490 * 109.47305 * 179.97438 * 3 2 1 5 5 C 1.34780 * 120.00111 * 89.99580 * 4 3 2 6 6 O 1.21280 * 120.00423 * 179.97438 * 5 4 3 7 7 C 1.50701 * 119.99795 * 0.02562 * 5 4 3 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 5 4 9 9 C 1.52999 * 110.01792 * 58.60679 * 8 7 5 10 10 C 1.54274 * 110.03394 * 297.16764 * 8 7 5 11 11 C 1.54884 * 104.19349 * 217.10315 * 10 8 7 12 12 C 1.54884 * 102.75052 * 37.94246 * 11 10 8 13 13 C 1.53875 * 110.03442 * 179.97438 * 8 7 5 14 14 C 1.46497 * 120.00322 * 270.00146 * 4 3 2 15 15 H 1.09003 * 110.88261 * 359.29646 * 14 4 3 16 16 C 1.55157 * 111.00859 * 123.17805 * 14 4 3 17 17 C 1.54319 * 102.94471 * 153.57785 * 16 14 4 18 18 N 1.47029 * 107.27258 * 337.80892 * 17 16 14 19 19 C 1.36930 * 125.64903 * 178.91111 * 18 17 16 20 20 H 1.08001 * 119.99890 * 180.02562 * 19 18 17 21 21 C 1.38815 * 119.99991 * 0.02562 * 19 18 17 22 22 N 1.31618 * 119.99955 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99867 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46998 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47032 * 120.00297 * 23 21 19 26 26 H 1.48496 * 109.47194 * 240.00349 * 23 21 19 27 27 C 1.47463 * 108.71932 * 358.97292 * 18 17 16 28 28 H 1.09000 * 109.47520 * 60.00419 * 1 2 3 29 29 H 1.09007 * 109.46969 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47601 * 299.99874 * 1 2 3 31 31 H 1.09001 * 109.46871 * 240.00041 * 2 1 3 32 32 H 1.08996 * 109.46833 * 119.99745 * 2 1 3 33 33 H 1.09006 * 109.47320 * 59.99792 * 3 2 1 34 34 H 1.09002 * 109.47139 * 300.00018 * 3 2 1 35 35 H 1.09002 * 109.47060 * 299.99722 * 7 5 4 36 36 H 1.09001 * 109.47380 * 59.99809 * 7 5 4 37 37 H 1.08997 * 109.47104 * 60.69903 * 9 8 7 38 38 H 1.08997 * 109.47748 * 180.70185 * 9 8 7 39 39 H 1.09005 * 109.47116 * 300.70023 * 9 8 7 40 40 H 1.09002 * 110.48341 * 335.78333 * 10 8 7 41 41 H 1.08997 * 110.48562 * 98.42608 * 10 8 7 42 42 H 1.09001 * 110.75954 * 279.62316 * 11 10 8 43 43 H 1.09012 * 110.75461 * 156.25335 * 11 10 8 44 44 H 1.09001 * 110.49071 * 203.37639 * 12 11 10 45 45 H 1.09003 * 110.60325 * 80.78993 * 12 11 10 46 46 H 1.09004 * 110.03213 * 238.56758 * 13 8 7 47 47 H 1.08998 * 110.03392 * 359.95510 * 13 8 7 48 48 H 1.08999 * 110.71923 * 271.94088 * 16 14 4 49 49 H 1.08994 * 110.71867 * 35.03264 * 16 14 4 50 50 H 1.09006 * 109.88441 * 97.22489 * 17 16 14 51 51 H 1.09002 * 109.88479 * 218.38741 * 17 16 14 52 52 H 0.97001 * 119.99721 * 179.97438 * 22 21 19 53 53 H 1.09002 * 110.35041 * 265.25613 * 27 18 17 54 54 H 1.09001 * 110.40681 * 142.91802 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1793 1.4424 -1.1663 6 8 5.3921 1.4429 -1.1659 7 6 3.4263 1.4426 -2.4717 8 6 4.4210 1.4429 -3.6342 9 6 5.3305 0.2158 -3.5456 10 6 5.2674 2.7324 -3.6053 11 6 5.4525 3.0988 -5.0987 12 6 4.0788 2.7328 -5.7134 13 6 3.6653 1.4425 -4.9746 14 6 4.2369 1.4428 1.2696 15 1 3.5489 1.4554 2.1150 16 6 5.2015 0.2305 1.3555 17 6 6.3009 0.7310 2.3158 18 7 6.2699 2.2007 2.2870 19 6 7.0765 3.0304 3.0190 20 1 6.9748 4.1017 2.9268 21 6 8.0248 2.4948 3.8796 22 7 8.1490 1.1892 3.9916 23 14 9.1246 3.6268 4.8788 24 1 8.7871 5.0405 4.5741 25 1 8.9154 3.3693 6.3263 26 1 10.5453 3.3705 4.5308 27 6 5.2254 2.6335 1.3403 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 2.7994 0.5528 -2.5297 36 1 2.7999 2.3328 -2.5298 37 1 4.7262 -0.6894 -3.6047 38 1 6.0432 0.2314 -4.3702 39 1 5.8702 0.2312 -2.5987 40 1 4.7353 3.5262 -3.0808 41 1 6.2330 2.5445 -3.1361 42 1 6.2474 2.5028 -5.5471 43 1 5.6553 4.1638 -5.2130 44 1 4.1769 2.5451 -6.7826 45 1 3.3535 3.5259 -5.5313 46 1 3.9474 0.5688 -5.5621 47 1 2.5899 1.4413 -4.7970 48 1 4.6923 -0.6387 1.7717 49 1 5.6180 -0.0011 0.3752 50 1 6.1002 0.3757 3.3266 51 1 7.2753 0.3741 1.9820 52 1 8.8119 0.8149 4.5927 53 1 5.6591 2.8252 0.3589 54 1 4.7200 3.5244 1.7132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691849825.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:48 Heat of formation + Delta-G solvation = -43.679975 kcal Electronic energy + Delta-G solvation = -29726.232320 eV Core-core repulsion = 26083.202721 eV Total energy + Delta-G solvation = -3643.029599 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.64339 -39.68798 -38.15671 -37.01535 -34.62488 -33.24332 -32.98289 -31.08138 -29.57657 -29.52782 -28.40581 -26.87776 -26.32454 -25.41291 -22.88690 -22.39298 -21.90002 -21.53459 -20.00750 -19.28972 -18.89996 -17.91803 -17.18628 -16.72430 -16.37363 -16.26328 -15.76906 -15.64529 -15.49816 -15.02851 -14.76749 -14.50925 -14.25976 -14.19667 -14.16426 -13.83514 -13.63196 -13.61780 -12.99720 -12.95634 -12.85914 -12.78242 -12.69055 -12.43729 -12.27870 -12.10123 -11.99373 -11.98705 -11.91929 -11.85926 -11.79841 -11.68245 -11.55633 -11.43964 -11.36753 -11.30773 -11.20111 -10.73487 -10.12078 -9.50492 -8.85651 -7.85887 -5.21824 1.42343 1.44977 1.55178 1.83442 2.06069 2.49420 3.31461 3.54622 3.70178 3.72537 3.80478 3.89548 3.94878 4.05642 4.14825 4.22960 4.27650 4.37763 4.40412 4.47493 4.54194 4.59906 4.63721 4.67130 4.69089 4.74597 4.75148 4.80743 4.89535 4.89786 4.94262 5.01877 5.02782 5.05905 5.09518 5.13798 5.18809 5.25029 5.29869 5.31244 5.33603 5.40871 5.46647 5.49076 5.54392 5.57053 5.64506 5.69051 5.71157 5.84225 6.17708 6.64179 7.08084 7.46159 7.75556 8.41609 9.24770 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012290 B = 0.003860 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.734691 B = 7253.022906 C = 8786.466905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.104 3.896 4 N -0.604 5.604 5 C 0.500 3.500 6 O -0.553 6.553 7 C -0.119 4.119 8 C -0.045 4.045 9 C -0.147 4.147 10 C -0.108 4.108 11 C -0.127 4.127 12 C -0.118 4.118 13 C -0.110 4.110 14 C 0.154 3.846 15 H 0.103 0.897 16 C -0.135 4.135 17 C 0.198 3.802 18 N -0.623 5.623 19 C -0.243 4.243 20 H 0.080 0.920 21 C -0.068 4.068 22 N -0.952 5.952 23 Si 0.982 3.018 24 H -0.265 1.265 25 H -0.286 1.286 26 H -0.293 1.293 27 C 0.127 3.873 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.037 0.963 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.085 0.915 48 H 0.075 0.925 49 H 0.065 0.935 50 H 0.015 0.985 51 H -0.007 1.007 52 H 0.246 0.754 53 H 0.028 0.972 54 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.069 -0.986 -18.469 27.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C -0.017 4.017 4 N -0.336 5.336 5 C 0.290 3.710 6 O -0.431 6.431 7 C -0.158 4.158 8 C -0.045 4.045 9 C -0.204 4.204 10 C -0.146 4.146 11 C -0.165 4.165 12 C -0.155 4.155 13 C -0.147 4.147 14 C 0.049 3.951 15 H 0.121 0.879 16 C -0.174 4.174 17 C 0.072 3.928 18 N -0.350 5.350 19 C -0.372 4.372 20 H 0.097 0.903 21 C -0.261 4.261 22 N -0.602 5.602 23 Si 0.810 3.190 24 H -0.190 1.190 25 H -0.213 1.213 26 H -0.221 1.221 27 C 0.000 4.000 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.104 0.896 48 H 0.093 0.907 49 H 0.083 0.917 50 H 0.033 0.967 51 H 0.011 0.989 52 H 0.056 0.944 53 H 0.045 0.955 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -19.301 -0.979 -18.334 26.639 hybrid contribution 1.503 0.250 1.156 1.913 sum -17.798 -0.729 -17.178 24.746 Atomic orbital electron populations 1.21671 0.93443 1.02344 1.02757 1.21929 0.97325 0.96391 1.02134 1.21970 0.77038 0.97891 1.04851 1.48062 1.07675 1.73363 1.04541 1.21391 0.88052 0.75296 0.86250 1.90687 1.15925 1.49154 1.87345 1.21971 0.98547 1.05731 0.89583 1.20910 0.94327 0.94991 0.94312 1.22077 0.99504 0.96899 1.01964 1.22359 0.99235 0.96507 0.96512 1.22521 0.98322 1.00725 0.94900 1.22339 0.95967 0.97594 0.99631 1.22268 1.00467 0.98324 0.93661 1.21928 0.92597 0.94435 0.86151 0.87931 1.22974 0.96920 0.97676 0.99866 1.20724 0.93957 0.83184 0.94927 1.44645 1.39941 1.02430 1.47935 1.19495 1.11609 0.89624 1.16438 0.90258 1.25701 1.01176 0.97579 1.01599 1.70224 1.37690 1.10868 1.41381 0.84959 0.77871 0.78274 0.77917 1.18966 1.21310 1.22058 1.21940 0.89530 0.95600 0.92881 0.91035 0.92366 0.92383 0.91722 0.93172 0.89706 0.87718 0.86906 0.86949 0.92475 0.93422 0.93035 0.92901 0.94364 0.92270 0.91731 0.90799 0.90834 0.91251 0.89615 0.90680 0.91665 0.96688 0.98894 0.94429 0.95452 0.94737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.91 71.98 0.71 -0.77 16 2 C -0.14 -2.08 6.26 30.59 0.19 -1.89 16 3 C 0.10 1.74 5.20 86.38 0.45 2.19 16 4 N -0.60 -16.30 2.56 -790.13 -2.02 -18.33 16 5 C 0.50 14.46 6.41 87.66 0.56 15.02 16 6 O -0.55 -21.68 8.20 -3.03 -0.02 -21.70 16 7 C -0.12 -2.23 2.96 29.85 0.09 -2.14 16 8 C -0.04 -0.94 0.63 -51.46 -0.03 -0.97 16 9 C -0.15 -3.71 7.82 71.98 0.56 -3.15 16 10 C -0.11 -2.75 4.74 31.67 0.15 -2.60 16 11 C -0.13 -2.52 6.91 31.88 0.22 -2.30 16 12 C -0.12 -1.69 6.83 31.68 0.22 -1.47 16 13 C -0.11 -1.57 6.12 31.34 0.19 -1.38 16 14 C 0.15 5.57 3.55 46.39 0.16 5.74 16 15 H 0.10 3.42 7.88 -2.39 -0.02 3.40 16 16 C -0.14 -5.69 6.31 31.78 0.20 -5.49 16 17 C 0.20 10.87 5.37 86.73 0.47 11.33 16 18 N -0.62 -35.32 3.40 -691.86 -2.35 -37.67 16 19 C -0.24 -14.71 10.28 84.04 0.86 -13.85 16 20 H 0.08 4.61 7.83 -2.91 -0.02 4.59 16 21 C -0.07 -4.12 5.49 84.86 0.47 -3.65 16 22 N -0.95 -60.90 10.31 21.65 0.22 -60.67 16 23 Si 0.98 48.32 29.55 68.60 2.03 50.35 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 27 C 0.13 5.83 6.61 86.85 0.57 6.40 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.96 7.22 -2.39 -0.02 0.94 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 1.34 7.95 -2.38 -0.02 1.33 16 34 H 0.10 1.18 6.44 -2.39 -0.02 1.16 16 35 H 0.11 1.57 7.19 -2.39 -0.02 1.56 16 36 H 0.11 1.58 7.38 -2.39 -0.02 1.57 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.05 1.73 5.43 -2.38 -0.01 1.72 16 40 H 0.05 1.37 7.84 -2.39 -0.02 1.35 16 41 H 0.04 1.27 7.15 -2.39 -0.02 1.26 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.07 0.97 7.67 -2.39 -0.02 0.95 16 47 H 0.09 0.87 7.67 -2.39 -0.02 0.85 16 48 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 49 H 0.06 2.92 5.98 -2.39 -0.01 2.90 16 50 H 0.01 0.89 7.38 -2.38 -0.02 0.87 16 51 H -0.01 -0.46 7.51 -2.39 -0.02 -0.48 16 52 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 53 H 0.03 1.38 5.81 -2.39 -0.01 1.37 16 54 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -77.02 397.05 4.74 -72.28 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.84 Total: 14.72 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 6.05 Total: 1.02 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -4.15 Total: -116.67 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.02 Total: -21.70 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.03 Total: 50.35 kcal Total: -77.02 4.74 -72.28 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691849825.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.599 kcal (2) G-P(sol) polarization free energy of solvation -77.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds