Wall clock time and date at job start Tue Mar 31 2020 13:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47381 * 2 1 4 4 N 1.46492 * 109.47197 * 180.02562 * 3 2 1 5 5 C 1.34783 * 120.00142 * 90.00057 * 4 3 2 6 6 O 1.21283 * 119.99919 * 174.98155 * 5 4 3 7 7 C 1.50701 * 119.99551 * 354.97626 * 5 4 3 8 8 C 1.53009 * 109.46690 * 180.02562 * 7 5 4 9 9 C 1.52997 * 110.01493 * 59.30132 * 8 7 5 10 10 C 1.54263 * 110.03186 * 297.90969 * 8 7 5 11 11 C 1.54965 * 104.15870 * 217.13724 * 10 8 7 12 12 C 1.54889 * 102.77782 * 37.88801 * 11 10 8 13 13 C 1.53875 * 110.02997 * 180.69086 * 8 7 5 14 14 C 1.46506 * 120.00210 * 269.99989 * 4 3 2 15 15 H 1.09004 * 110.64014 * 178.12791 * 14 4 3 16 16 C 1.55153 * 110.71857 * 54.79082 * 14 4 3 17 17 C 1.54905 * 101.58421 * 277.14332 * 16 14 4 18 18 N 1.47435 * 104.83082 * 322.99061 * 17 16 14 19 19 C 1.36935 * 125.65035 * 204.16560 * 18 17 16 20 20 H 1.07993 * 120.00235 * 179.97438 * 19 18 17 21 21 C 1.38816 * 119.99689 * 359.95725 * 19 18 17 22 22 N 1.31614 * 120.00245 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99736 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46950 * 59.99783 * 23 21 19 25 25 H 1.48492 * 109.47135 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46921 * 300.00083 * 23 21 19 27 27 C 1.47023 * 108.70147 * 24.12895 * 18 17 16 28 28 H 1.08999 * 109.46385 * 299.99784 * 1 2 3 29 29 H 1.08998 * 109.46871 * 59.99668 * 1 2 3 30 30 H 1.08993 * 109.47167 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46768 * 239.99919 * 2 1 3 32 32 H 1.08998 * 109.46871 * 120.00332 * 2 1 3 33 33 H 1.09001 * 109.46732 * 60.00093 * 3 2 1 34 34 H 1.09003 * 109.46901 * 300.00562 * 3 2 1 35 35 H 1.08999 * 109.47293 * 299.99790 * 7 5 4 36 36 H 1.08999 * 109.46903 * 60.00646 * 7 5 4 37 37 H 1.08994 * 109.47286 * 60.70296 * 9 8 7 38 38 H 1.09006 * 109.46996 * 180.69933 * 9 8 7 39 39 H 1.08998 * 109.47592 * 300.69497 * 9 8 7 40 40 H 1.09000 * 110.48803 * 335.78465 * 10 8 7 41 41 H 1.09000 * 110.49051 * 98.43019 * 10 8 7 42 42 H 1.08994 * 110.71989 * 279.57500 * 11 10 8 43 43 H 1.09007 * 110.92029 * 156.29261 * 11 10 8 44 44 H 1.08999 * 110.48854 * 203.40461 * 12 11 10 45 45 H 1.09006 * 110.59950 * 80.81842 * 12 11 10 46 46 H 1.08996 * 110.03179 * 238.57052 * 13 8 7 47 47 H 1.09000 * 110.03146 * 359.95084 * 13 8 7 48 48 H 1.09008 * 111.00387 * 35.21587 * 16 14 4 49 49 H 1.08995 * 111.00421 * 159.06571 * 16 14 4 50 50 H 1.08997 * 110.36981 * 204.15403 * 17 16 14 51 51 H 1.09004 * 110.37138 * 81.82695 * 17 16 14 52 52 H 0.96998 * 120.00280 * 179.97438 * 22 21 19 53 53 H 1.09003 * 109.88093 * 239.52538 * 27 18 17 54 54 H 1.09000 * 110.01042 * 118.42712 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1785 1.4426 -1.1681 6 8 5.3878 1.5344 -1.1706 7 6 3.4287 1.3285 -2.4704 8 6 4.4217 1.3525 -3.6343 9 6 5.4104 0.1923 -3.5031 10 6 5.1816 2.6949 -3.6530 11 6 5.3416 3.0189 -5.1599 12 6 3.9953 2.5406 -5.7580 13 6 3.6679 1.2541 -4.9722 14 6 4.2381 1.4422 1.2678 15 1 5.3131 1.4089 1.0903 16 6 3.7884 0.2564 2.1616 17 6 2.5114 0.8322 2.8229 18 7 2.8181 2.2546 3.0606 19 6 2.2283 3.0512 4.0054 20 1 2.5244 4.0853 4.1010 21 6 1.2497 2.5294 4.8403 22 7 0.8883 1.2692 4.7233 23 14 0.4446 3.6162 6.1288 24 1 -0.2258 4.7612 5.4617 25 1 -0.5596 2.8262 6.8853 26 1 1.4799 4.1252 7.0639 27 6 3.8627 2.6759 2.1156 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9562 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.8714 0.3919 -2.4880 36 1 2.7365 2.1651 -2.5656 37 1 4.8674 -0.7524 -3.5282 38 1 6.1207 0.2251 -4.3293 39 1 5.9476 0.2777 -2.5586 40 1 4.5985 3.4703 -3.1561 41 1 6.1574 2.5875 -3.1794 42 1 6.1743 2.4609 -5.5880 43 1 5.4750 4.0895 -5.3158 44 1 4.1061 2.3212 -6.8200 45 1 3.2191 3.2901 -5.6033 46 1 4.0072 0.3803 -5.5284 47 1 2.5949 1.1884 -4.7923 48 1 3.5542 -0.6208 1.5582 49 1 4.5449 0.0228 2.9106 50 1 2.3110 0.3246 3.7665 51 1 1.6590 0.7352 2.1504 52 1 0.2047 0.9045 5.3069 53 1 4.7366 3.0297 2.6626 54 1 3.4839 3.4681 1.4698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691849827.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:52 Heat of formation + Delta-G solvation = -34.355858 kcal Electronic energy + Delta-G solvation = -29946.464967 eV Core-core repulsion = 26303.839692 eV Total energy + Delta-G solvation = -3642.625275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.68358 -39.98290 -38.45655 -36.52708 -34.54041 -33.39345 -32.98365 -31.13118 -29.53223 -29.46755 -28.49524 -27.14192 -26.19968 -25.51487 -22.70159 -22.16076 -21.94897 -21.50802 -20.03120 -19.35896 -18.91988 -18.35049 -17.24312 -16.71746 -16.38235 -16.27020 -15.85710 -15.66572 -15.54512 -14.84806 -14.82567 -14.50270 -14.35471 -14.10559 -14.03829 -13.66347 -13.58729 -13.37493 -13.06352 -12.99388 -12.86334 -12.79797 -12.56994 -12.54045 -12.42765 -12.09549 -12.03871 -11.96290 -11.87353 -11.83293 -11.72683 -11.59677 -11.44361 -11.38338 -11.34348 -11.27512 -11.19882 -10.66045 -10.36690 -9.53604 -8.83285 -7.73878 -5.17240 1.47951 1.49690 1.56062 1.72398 2.06382 2.50979 3.35518 3.51405 3.70232 3.72630 3.80500 3.87145 3.95038 4.03746 4.09860 4.21557 4.32974 4.36938 4.38533 4.46727 4.55340 4.60219 4.65154 4.66393 4.69022 4.71724 4.77197 4.83469 4.88289 4.89706 4.92357 5.00544 5.02424 5.04525 5.09175 5.10462 5.19183 5.22668 5.26868 5.30702 5.38210 5.43644 5.48177 5.50122 5.50828 5.55954 5.65993 5.74771 5.76658 5.87723 6.35253 6.59158 7.14820 7.30551 7.80577 8.44764 9.26431 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.020481 B = 0.003287 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.760955 B = 8516.276105 C = 8778.278295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.105 3.895 4 N -0.594 5.594 5 C 0.511 3.489 6 O -0.568 6.568 7 C -0.123 4.123 8 C -0.046 4.046 9 C -0.145 4.145 10 C -0.108 4.108 11 C -0.125 4.125 12 C -0.121 4.121 13 C -0.113 4.113 14 C 0.140 3.860 15 H 0.098 0.902 16 C -0.144 4.144 17 C 0.146 3.854 18 N -0.618 5.618 19 C -0.240 4.240 20 H 0.073 0.927 21 C -0.056 4.056 22 N -0.940 5.940 23 Si 0.974 3.026 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.283 1.283 27 C 0.129 3.871 28 H 0.032 0.968 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.050 0.950 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.065 0.935 50 H 0.065 0.935 51 H 0.036 0.964 52 H 0.247 0.753 53 H 0.024 0.976 54 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.424 -2.855 -20.866 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C -0.018 4.018 4 N -0.326 5.326 5 C 0.301 3.699 6 O -0.447 6.447 7 C -0.163 4.163 8 C -0.046 4.046 9 C -0.203 4.203 10 C -0.146 4.146 11 C -0.162 4.162 12 C -0.158 4.158 13 C -0.150 4.150 14 C 0.036 3.964 15 H 0.116 0.884 16 C -0.183 4.183 17 C 0.022 3.978 18 N -0.344 5.344 19 C -0.369 4.369 20 H 0.091 0.909 21 C -0.250 4.250 22 N -0.589 5.589 23 Si 0.802 3.198 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.209 1.209 27 C 0.002 3.998 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.095 0.905 48 H 0.102 0.898 49 H 0.084 0.916 50 H 0.083 0.917 51 H 0.054 0.946 52 H 0.057 0.943 53 H 0.042 0.958 54 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 2.900 -2.806 -20.707 21.096 hybrid contribution -0.357 0.693 1.498 1.689 sum 2.543 -2.113 -19.209 19.491 Atomic orbital electron populations 1.21629 0.94595 1.02224 1.01603 1.22085 0.96814 0.96231 1.02618 1.21850 0.78320 0.98157 1.03449 1.47995 1.07258 1.72307 1.04995 1.21282 0.87848 0.74814 0.85922 1.90580 1.15580 1.51086 1.87497 1.21989 0.98837 1.05338 0.90094 1.20933 0.94357 0.95716 0.93644 1.22059 0.99002 0.96845 1.02349 1.22381 0.99801 0.95855 0.96514 1.22526 0.98173 1.00799 0.94739 1.22342 0.96749 0.97135 0.99601 1.22271 1.00382 0.98555 0.93810 1.21772 0.96545 0.94911 0.83195 0.88442 1.23274 0.99529 0.97197 0.98300 1.22085 0.92807 0.83606 0.99272 1.44711 1.43210 1.08740 1.37776 1.19306 1.15227 0.93203 1.09201 0.90922 1.25467 1.00072 0.97758 1.01653 1.70021 1.34065 1.13318 1.41500 0.85232 0.77796 0.77732 0.79000 1.20602 1.21836 1.20903 1.21668 0.91476 0.95471 0.91137 0.94844 0.90971 0.91672 0.90388 0.92151 0.91321 0.88949 0.87237 0.87870 0.92711 0.92706 0.92463 0.93357 0.93075 0.91596 0.91614 0.90690 0.91445 0.90891 0.90486 0.89803 0.91593 0.91718 0.94607 0.94337 0.95820 0.96210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.89 71.98 0.71 -2.78 16 2 C -0.14 -3.63 5.09 30.60 0.16 -3.47 16 3 C 0.10 3.07 4.25 86.38 0.37 3.44 16 4 N -0.59 -18.63 2.45 -791.24 -1.94 -20.57 16 5 C 0.51 14.86 7.12 87.66 0.62 15.48 16 6 O -0.57 -19.63 11.54 -3.04 -0.04 -19.66 16 7 C -0.12 -2.54 3.07 29.85 0.09 -2.45 16 8 C -0.05 -0.91 0.63 -51.46 -0.03 -0.94 16 9 C -0.15 -3.16 7.83 71.98 0.56 -2.60 16 10 C -0.11 -2.43 4.70 31.69 0.15 -2.28 16 11 C -0.12 -2.15 6.91 31.91 0.22 -1.93 16 12 C -0.12 -1.69 6.83 31.67 0.22 -1.48 16 13 C -0.11 -1.64 6.11 31.32 0.19 -1.45 16 14 C 0.14 5.15 3.58 46.18 0.17 5.31 16 15 H 0.10 3.62 7.01 -2.38 -0.02 3.60 16 16 C -0.14 -5.42 6.09 31.98 0.19 -5.23 16 17 C 0.15 6.80 4.65 86.85 0.40 7.20 16 18 N -0.62 -31.06 2.97 -691.96 -2.06 -33.12 16 19 C -0.24 -13.30 10.27 84.03 0.86 -12.44 16 20 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 21 C -0.06 -3.11 5.49 84.86 0.47 -2.64 16 22 N -0.94 -53.74 10.09 21.65 0.22 -53.53 16 23 Si 0.97 45.00 29.55 68.60 2.03 47.03 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 27 C 0.13 5.55 6.25 86.73 0.54 6.09 16 28 H 0.03 1.03 8.12 -2.39 -0.02 1.01 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.65 6.94 -2.39 -0.02 1.63 16 32 H 0.06 1.87 4.34 -2.39 -0.01 1.86 16 33 H 0.07 2.64 5.19 -2.39 -0.01 2.62 16 34 H 0.09 2.18 6.47 -2.39 -0.02 2.16 16 35 H 0.11 1.88 6.94 -2.39 -0.02 1.86 16 36 H 0.10 1.88 7.24 -2.39 -0.02 1.87 16 37 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.06 1.61 5.49 -2.39 -0.01 1.59 16 40 H 0.05 1.17 7.84 -2.39 -0.02 1.15 16 41 H 0.05 1.40 7.12 -2.39 -0.02 1.39 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.07 0.98 7.67 -2.39 -0.02 0.96 16 47 H 0.08 0.95 7.67 -2.39 -0.02 0.93 16 48 H 0.08 2.82 6.44 -2.38 -0.02 2.80 16 49 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 50 H 0.06 3.53 5.87 -2.39 -0.01 3.52 16 51 H 0.04 1.65 3.99 -2.39 -0.01 1.65 16 52 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 53 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 54 H 0.02 0.87 8.04 -2.39 -0.02 0.85 16 Total: -1.00 -63.06 386.65 4.97 -58.09 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.86 Total: 23.91 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 5.89 Total: -2.16 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -3.78 Total: -107.21 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.04 Total: -19.66 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -63.06 4.97 -58.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691849827.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.734 kcal (2) G-P(sol) polarization free energy of solvation -63.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds