Wall clock time and date at job start Tue Mar 31 2020 15:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47090 * 2 1 4 4 C 1.50706 * 109.47095 * 119.99546 * 2 1 3 5 5 O 1.21286 * 119.99849 * 103.49366 * 4 2 1 6 6 N 1.34772 * 120.00008 * 283.49821 * 4 2 1 7 7 C 1.46924 * 120.63230 * 5.87466 * 6 4 2 8 8 C 1.53198 * 108.77282 * 126.37014 * 7 6 4 9 9 C 1.53039 * 109.31283 * 54.63802 * 8 7 6 10 10 C 1.53044 * 109.53789 * 298.63160 * 9 8 7 11 11 H 1.08997 * 109.49773 * 181.31778 * 10 9 8 12 12 C 1.53005 * 109.49504 * 301.38389 * 10 9 8 13 13 C 1.46927 * 120.62714 * 185.59558 * 6 4 2 14 14 H 1.09003 * 109.58428 * 113.84233 * 13 6 4 15 15 C 1.52996 * 109.59068 * 353.42102 * 13 6 4 16 16 C 1.52993 * 109.47302 * 179.51402 * 15 13 6 17 17 C 1.53009 * 109.47156 * 185.14192 * 16 15 13 18 18 N 1.46495 * 109.47280 * 180.02562 * 17 16 15 19 19 C 1.36939 * 120.00357 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99426 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00215 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99739 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99997 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46853 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47005 * 119.99869 * 23 21 19 26 26 H 1.48492 * 109.47244 * 240.00152 * 23 21 19 27 27 C 1.52996 * 109.47154 * 239.99439 * 2 1 3 28 28 C 1.53000 * 117.49906 * 128.74707 * 27 2 1 29 29 C 1.53005 * 117.49775 * 60.09089 * 27 2 1 30 30 H 1.08997 * 109.47387 * 64.60653 * 1 2 3 31 31 H 1.08996 * 109.47657 * 184.61161 * 1 2 3 32 32 H 1.09009 * 109.47197 * 304.60833 * 1 2 3 33 33 H 1.08996 * 109.59134 * 246.15480 * 7 6 4 34 34 H 1.09004 * 109.58529 * 6.44473 * 7 6 4 35 35 H 1.09007 * 109.49324 * 174.58847 * 8 7 6 36 36 H 1.08998 * 109.49547 * 294.64864 * 8 7 6 37 37 H 1.08997 * 109.46214 * 58.65312 * 9 8 7 38 38 H 1.09001 * 109.45630 * 178.61693 * 9 8 7 39 39 H 1.08994 * 109.47280 * 60.00106 * 12 10 9 40 40 H 1.09005 * 109.46357 * 179.97438 * 12 10 9 41 41 H 1.08995 * 109.47232 * 299.99293 * 12 10 9 42 42 H 1.09004 * 109.46976 * 299.51408 * 15 13 6 43 43 H 1.09002 * 109.47204 * 59.50937 * 15 13 6 44 44 H 1.08998 * 109.47336 * 305.14037 * 16 15 13 45 45 H 1.09002 * 109.47594 * 65.14598 * 16 15 13 46 46 H 1.09006 * 109.46912 * 299.99787 * 17 16 15 47 47 H 1.08996 * 109.47144 * 60.00051 * 17 16 15 48 48 H 0.97002 * 120.00059 * 359.97438 * 18 17 16 49 49 H 0.97001 * 119.99329 * 180.02562 * 22 21 19 50 50 H 1.08999 * 115.55407 * 274.42338 * 27 2 1 51 51 H 1.09008 * 117.49699 * 0.02562 * 28 27 2 52 52 H 1.08997 * 117.50279 * 145.01842 * 28 27 2 53 53 H 1.08994 * 117.50063 * 214.98154 * 29 27 2 54 54 H 1.08999 * 117.49541 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.4655 -1.8399 1.1443 6 7 2.0001 -0.0904 2.4268 7 6 1.3622 1.2252 2.5713 8 6 0.3279 1.1504 3.6990 9 6 1.0036 0.6364 4.9723 10 6 1.5537 -0.7706 4.7274 11 1 2.0142 -1.1454 5.6415 12 6 0.4116 -1.7004 4.3126 13 6 2.5969 -0.7202 3.6126 14 1 3.4545 -0.1350 3.9445 15 6 3.0451 -2.1418 3.2676 16 6 3.6770 -2.7907 4.5006 17 6 4.2402 -4.1624 4.1230 18 7 4.8447 -4.7840 5.3037 19 6 5.4176 -6.0240 5.2071 20 1 5.4234 -6.5438 4.2605 21 6 5.9909 -6.6128 6.3259 22 7 5.9842 -5.9789 7.4794 23 14 6.7718 -8.3046 6.1942 24 1 6.6495 -8.7990 4.7992 25 1 8.2074 -8.2172 6.5638 26 1 6.0798 -9.2422 7.1146 27 6 2.0400 -0.7214 -1.2491 28 6 3.0763 0.0038 -2.1100 29 6 1.6374 -0.1485 -2.6096 30 1 -0.3634 0.4407 -0.9283 31 1 -0.3634 -1.0243 0.0826 32 1 -0.3634 0.5837 0.8459 33 1 2.1168 1.9723 2.8167 34 1 0.8691 1.4966 1.6378 35 1 -0.0841 2.1431 3.8811 36 1 -0.4744 0.4705 3.4123 37 1 1.8214 1.3037 5.2442 38 1 0.2754 0.6055 5.7827 39 1 -0.0478 -1.3260 3.3979 40 1 0.8041 -2.7023 4.1379 41 1 -0.3348 -1.7355 5.1061 42 1 2.1825 -2.7278 2.9504 43 1 3.7768 -2.1062 2.4604 44 1 4.4824 -2.1571 4.8722 45 1 2.9208 -2.9096 5.2765 46 1 3.4348 -4.7960 3.7514 47 1 4.9964 -4.0436 3.3471 48 1 4.8398 -4.3169 6.1539 49 1 6.3851 -6.3903 8.2610 50 1 2.1252 -1.8047 -1.1646 51 1 3.3951 0.9946 -1.7862 52 1 3.8432 -0.6025 -2.5921 53 1 1.4582 -0.8549 -3.4200 54 1 1.0089 0.7421 -2.6146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691881272.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:39 Heat of formation + Delta-G solvation = -22.679946 kcal Electronic energy + Delta-G solvation = -29015.562013 eV Core-core repulsion = 25373.443043 eV Total energy + Delta-G solvation = -3642.118970 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.98361 -39.39211 -37.94197 -37.31464 -35.53060 -34.39590 -33.25075 -32.56150 -31.03434 -28.37261 -27.34203 -26.26186 -25.28904 -24.69482 -23.34794 -23.10189 -21.98631 -21.94535 -20.35975 -19.23518 -19.16962 -18.03735 -17.25624 -16.87147 -16.56936 -16.21787 -15.98771 -15.64271 -15.41509 -15.27812 -15.15927 -14.90109 -14.76802 -14.59234 -14.34201 -13.71519 -13.55439 -13.36836 -13.23948 -13.10946 -12.94767 -12.81607 -12.74950 -12.66342 -12.43620 -12.27542 -12.16519 -12.09402 -11.94401 -11.89644 -11.82067 -11.70883 -11.55753 -11.27448 -11.24013 -11.12314 -10.97619 -10.86802 -9.90566 -9.43093 -9.06328 -7.99847 -5.29848 1.43304 1.45347 1.56027 1.72907 2.01419 2.52540 2.92261 3.32765 3.44712 3.67598 3.76772 3.80810 3.90327 3.97885 4.02075 4.11888 4.15419 4.19096 4.23430 4.26471 4.34461 4.48723 4.50447 4.52460 4.58874 4.63991 4.68538 4.70835 4.78433 4.79838 4.83860 4.88900 4.91079 4.97264 4.99848 5.04866 5.06328 5.09250 5.15117 5.24441 5.25812 5.27628 5.30648 5.34478 5.40642 5.42754 5.45732 5.51530 5.56899 5.79551 6.22917 6.55588 7.28296 7.33025 8.02383 8.29367 9.24112 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013716 B = 0.002952 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.921735 B = 9482.069688 C =11066.145735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.071 4.071 3 H 0.114 0.886 4 C 0.508 3.492 5 O -0.568 6.568 6 N -0.603 5.603 7 C 0.095 3.905 8 C -0.132 4.132 9 C -0.112 4.112 10 C -0.104 4.104 11 H 0.072 0.928 12 C -0.140 4.140 13 C 0.156 3.844 14 H 0.072 0.928 15 C -0.083 4.083 16 C -0.116 4.116 17 C 0.158 3.842 18 N -0.746 5.746 19 C -0.253 4.253 20 H 0.070 0.930 21 C -0.075 4.075 22 N -0.969 5.969 23 Si 0.979 3.021 24 H -0.269 1.269 25 H -0.288 1.288 26 H -0.288 1.288 27 C -0.158 4.158 28 C -0.185 4.185 29 C -0.157 4.157 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.033 0.967 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.007 0.993 47 H 0.007 0.993 48 H 0.375 0.625 49 H 0.254 0.746 50 H 0.083 0.917 51 H 0.106 0.894 52 H 0.085 0.915 53 H 0.095 0.905 54 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.701 24.842 -15.950 33.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.092 4.092 3 H 0.132 0.868 4 C 0.298 3.702 5 O -0.448 6.448 6 N -0.336 5.336 7 C -0.026 4.026 8 C -0.170 4.170 9 C -0.149 4.149 10 C -0.124 4.124 11 H 0.090 0.910 12 C -0.197 4.197 13 C 0.053 3.947 14 H 0.090 0.910 15 C -0.121 4.121 16 C -0.154 4.154 17 C 0.031 3.969 18 N -0.389 5.389 19 C -0.384 4.384 20 H 0.088 0.912 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.807 3.193 24 H -0.194 1.194 25 H -0.215 1.215 26 H -0.214 1.214 27 C -0.176 4.176 28 C -0.222 4.222 29 C -0.193 4.193 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.025 0.975 47 H 0.025 0.975 48 H 0.207 0.793 49 H 0.062 0.938 50 H 0.102 0.898 51 H 0.124 0.876 52 H 0.103 0.897 53 H 0.114 0.886 54 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.435 24.116 -16.107 33.333 hybrid contribution 0.902 -1.425 0.630 1.800 sum -15.532 22.691 -15.477 31.554 Atomic orbital electron populations 1.21850 0.91041 1.02406 1.04379 1.20876 0.98459 0.99985 0.89843 0.86783 1.21180 0.77631 0.86183 0.85231 1.90787 1.47619 1.20273 1.86092 1.48191 1.57267 1.20757 1.07366 1.22184 0.96257 0.82822 1.01352 1.21961 0.97802 1.03054 0.94207 1.21542 1.00682 0.94250 0.98461 1.21459 0.95913 0.97439 0.97551 0.90960 1.21819 0.98016 0.98527 1.01382 1.21123 0.95025 0.93114 0.85451 0.91013 1.21823 1.00640 0.94756 0.94908 1.21759 0.99730 0.95008 0.98927 1.20672 0.93982 0.93181 0.89022 1.42601 1.69118 1.18739 1.08420 1.19681 1.28823 0.94561 0.95377 0.91250 1.25635 1.02831 1.02984 0.95263 1.69831 1.51734 1.39996 1.00363 0.85004 0.77561 0.79137 0.77633 1.19359 1.21454 1.21444 1.22017 1.05364 0.98867 0.91399 1.23108 0.93029 1.02084 1.03958 1.23051 0.97362 1.03475 0.95455 0.89247 0.93863 0.90093 0.90077 0.87110 0.88079 0.91477 0.91120 0.90914 0.92281 0.94748 0.92071 0.91973 0.92215 0.92483 0.92065 0.97462 0.97466 0.79325 0.93752 0.89846 0.87610 0.89688 0.88610 0.86483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.76 71.98 0.63 -0.92 16 2 C -0.07 -1.09 2.02 -11.54 -0.02 -1.11 16 3 H 0.11 1.18 7.07 -2.39 -0.02 1.17 16 4 C 0.51 12.02 6.82 87.66 0.60 12.61 16 5 O -0.57 -19.15 11.08 -3.05 -0.03 -19.18 16 6 N -0.60 -11.83 2.42 -795.81 -1.93 -13.75 16 7 C 0.10 1.00 5.77 86.37 0.50 1.50 16 8 C -0.13 -1.28 5.74 30.67 0.18 -1.10 16 9 C -0.11 -1.57 5.43 30.62 0.17 -1.41 16 10 C -0.10 -2.23 2.31 -10.86 -0.03 -2.26 16 11 H 0.07 1.76 6.89 -2.39 -0.02 1.74 16 12 C -0.14 -3.23 8.19 71.98 0.59 -2.64 16 13 C 0.16 3.82 2.69 44.83 0.12 3.94 16 14 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 15 C -0.08 -2.76 2.65 30.59 0.08 -2.68 16 16 C -0.12 -4.39 4.85 30.59 0.15 -4.25 16 17 C 0.16 7.58 6.26 86.38 0.54 8.12 16 18 N -0.75 -42.65 5.60 -343.45 -1.92 -44.57 16 19 C -0.25 -15.53 9.99 84.03 0.84 -14.69 16 20 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 21 C -0.07 -4.59 5.50 84.86 0.47 -4.12 16 22 N -0.97 -62.10 13.06 21.65 0.28 -61.82 16 23 Si 0.98 48.70 29.55 68.60 2.03 50.73 16 24 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 25 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 26 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 27 C -0.16 -2.93 4.90 -10.79 -0.05 -2.98 16 28 C -0.18 -2.89 10.18 30.62 0.31 -2.57 16 29 C -0.16 -1.96 9.68 30.62 0.30 -1.66 16 30 H 0.09 0.63 7.14 -2.39 -0.02 0.62 16 31 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 0.61 6.04 -2.38 -0.01 0.59 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.11 0.66 4.26 -2.38 -0.01 0.65 16 35 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 36 H 0.07 0.75 6.34 -2.39 -0.02 0.73 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.06 1.27 5.98 -2.39 -0.01 1.25 16 40 H 0.03 0.99 6.31 -2.38 -0.02 0.98 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.06 2.27 5.20 -2.39 -0.01 2.26 16 43 H 0.06 2.27 6.42 -2.39 -0.02 2.26 16 44 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.06 2.29 6.87 -2.39 -0.02 2.27 16 46 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 47 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 48 H 0.37 22.15 7.67 -92.71 -0.71 21.44 16 49 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 50 H 0.08 2.17 7.32 -2.39 -0.02 2.15 16 51 H 0.11 1.34 8.05 -2.38 -0.02 1.32 16 52 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 53 H 0.10 1.17 8.14 -2.39 -0.02 1.16 16 54 H 0.12 0.92 7.59 -2.39 -0.02 0.90 16 Total: -1.00 -76.31 397.75 3.95 -72.36 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.16 Total: 32.45 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 5.36 Total: -16.21 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -3.57 Total: -120.15 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.03 Total: -19.18 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.03 Total: 50.73 kcal Total: -76.31 3.95 -72.36 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691881272.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.680 kcal (2) G-P(sol) polarization free energy of solvation -76.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds