Wall clock time and date at job start Tue Mar 31 2020 15:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.52792 * 2 1 4 4 C 1.53036 * 109.49983 * 120.08541 * 2 1 3 5 5 C 1.53038 * 109.54482 * 181.31619 * 4 2 1 6 6 C 1.53194 * 109.31183 * 298.63559 * 5 4 2 7 7 N 1.46930 * 108.77527 * 54.62887 * 6 5 4 8 8 C 1.34778 * 120.62701 * 126.41407 * 7 6 5 9 9 O 1.21281 * 119.99881 * 183.30657 * 8 7 6 10 10 C 1.50701 * 120.00043 * 3.30702 * 8 7 6 11 11 C 1.53782 * 113.61556 * 277.49642 * 10 8 7 12 12 C 1.53783 * 87.07933 * 220.02135 * 11 10 8 13 13 C 1.52999 * 113.60983 * 270.88143 * 12 11 10 14 14 C 1.53001 * 113.68925 * 139.99615 * 12 11 10 15 15 C 1.53779 * 87.08299 * 25.43239 * 12 11 10 16 16 C 1.46926 * 118.74121 * 306.39598 * 7 6 5 17 17 H 1.09000 * 109.58425 * 293.67701 * 16 7 6 18 18 C 1.52996 * 109.58512 * 173.39669 * 16 7 6 19 19 C 1.53006 * 109.47043 * 291.80432 * 18 16 7 20 20 N 1.46494 * 109.47141 * 173.66914 * 19 18 16 21 21 C 1.36938 * 120.00194 * 180.02562 * 20 19 18 22 22 H 1.08000 * 119.99571 * 359.97438 * 21 20 19 23 23 C 1.38816 * 119.99947 * 179.97438 * 21 20 19 24 24 N 1.31617 * 120.00260 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99646 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47158 * 270.00270 * 25 23 21 27 27 H 1.48500 * 109.46968 * 30.00466 * 25 23 21 28 28 H 1.48502 * 109.46740 * 150.00230 * 25 23 21 29 29 H 1.08999 * 109.47301 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47087 * 300.08053 * 1 2 3 31 31 H 1.09001 * 109.46807 * 60.07658 * 1 2 3 32 32 H 1.09002 * 109.45813 * 61.28867 * 4 2 1 33 33 H 1.09004 * 109.44918 * 301.33161 * 4 2 1 34 34 H 1.09000 * 109.49987 * 178.68219 * 5 4 2 35 35 H 1.09003 * 109.49380 * 58.58226 * 5 4 2 36 36 H 1.09002 * 109.58657 * 294.84904 * 6 5 4 37 37 H 1.08992 * 109.70590 * 174.48878 * 6 5 4 38 38 H 1.08994 * 112.84845 * 48.80610 * 10 8 7 39 39 H 1.08999 * 113.61124 * 334.56684 * 11 10 8 40 40 H 1.08993 * 113.61192 * 105.47115 * 11 10 8 41 41 H 1.09007 * 109.46668 * 157.49853 * 13 12 11 42 42 H 1.08998 * 109.47706 * 277.49795 * 13 12 11 43 43 H 1.08994 * 109.47261 * 37.50486 * 13 12 11 44 44 H 1.09004 * 109.46799 * 322.46033 * 14 12 11 45 45 H 1.08998 * 109.47680 * 82.45980 * 14 12 11 46 46 H 1.08997 * 109.46792 * 202.46186 * 14 12 11 47 47 H 1.08997 * 113.61753 * 220.01774 * 15 12 11 48 48 H 1.08994 * 113.61396 * 89.11659 * 15 12 11 49 49 H 1.09006 * 109.47140 * 171.80673 * 18 16 7 50 50 H 1.08995 * 109.47642 * 51.80617 * 18 16 7 51 51 H 1.08998 * 109.46786 * 53.67184 * 19 18 16 52 52 H 1.08994 * 109.47104 * 293.66860 * 19 18 16 53 53 H 0.97003 * 120.00522 * 359.97438 * 20 19 18 54 54 H 0.96992 * 120.00038 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7232 1.2482 5 6 3.5708 -0.6952 1.2660 6 6 4.1053 -1.4268 0.0307 7 7 3.5046 -0.8291 -1.1696 8 6 4.2812 -0.3864 -2.1783 9 8 3.7772 0.1592 -3.1371 10 6 5.7757 -0.5692 -2.1148 11 6 6.4938 0.5098 -1.2872 12 6 7.5923 0.4924 -2.3631 13 6 8.6997 -0.5279 -2.0917 14 6 8.1351 1.8801 -2.7100 15 6 6.5172 -0.0108 -3.3408 16 6 2.0413 -0.7237 -1.2496 17 1 1.6054 -1.7215 -1.3007 18 6 1.6518 0.0706 -2.4979 19 6 2.0829 1.5290 -2.3295 20 7 1.8479 2.2551 -3.5799 21 6 2.1602 3.5855 -3.6681 22 1 2.5794 4.0995 -2.8157 23 6 1.9381 4.2735 -4.8532 24 7 1.4268 3.6472 -5.8918 25 14 2.3634 6.0885 -4.9733 26 1 1.1868 6.9003 -4.5713 27 1 3.5044 6.3901 -4.0719 28 1 2.7373 6.4176 -6.3723 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5150 0.8892 31 1 -0.3633 0.5127 -0.8907 32 1 1.6966 -1.7573 1.2352 33 1 1.6582 -0.2244 2.1388 34 1 3.9334 -1.1899 2.1671 35 1 3.9159 0.3387 1.2541 36 1 3.8375 -2.4819 0.0866 37 1 5.1897 -1.3269 -0.0150 38 1 6.0669 -1.5868 -1.8545 39 1 5.9499 1.4529 -1.2337 40 1 6.8319 0.1591 -0.3121 41 1 9.2014 -0.7769 -3.0269 42 1 9.4216 -0.1037 -1.3939 43 1 8.2651 -1.4300 -1.6613 44 1 7.3194 2.6031 -2.6967 45 1 8.8887 2.1692 -1.9775 46 1 8.5838 1.8569 -3.7031 47 1 6.8743 -0.7816 -4.0236 48 1 5.9799 0.7900 -3.8487 49 1 0.5715 0.0246 -2.6354 50 1 2.1475 -0.3564 -3.3697 51 1 3.1433 1.5679 -2.0805 52 1 1.5044 1.9886 -1.5282 53 1 1.4718 1.7935 -4.3456 54 1 1.2713 4.1280 -6.7197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691991635.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:47 Heat of formation + Delta-G solvation = -11.074884 kcal Electronic energy + Delta-G solvation = -30251.821192 eV Core-core repulsion = 26610.205455 eV Total energy + Delta-G solvation = -3641.615737 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.16764 -40.26991 -38.29142 -36.77224 -35.03500 -33.97303 -32.57874 -31.82286 -29.87706 -28.25192 -27.62254 -26.69246 -26.62826 -25.35124 -24.05745 -23.62792 -22.21550 -20.78986 -19.61064 -19.14465 -19.03720 -17.95358 -16.99867 -16.76045 -16.54737 -15.93461 -15.77625 -15.71594 -15.40611 -15.10328 -14.94895 -14.59164 -14.46701 -14.30849 -13.95048 -13.81392 -13.65471 -13.52435 -13.39999 -13.16972 -12.92503 -12.87382 -12.73994 -12.54272 -12.42906 -12.40491 -12.33216 -12.13284 -11.93348 -11.83796 -11.69012 -11.64250 -11.54840 -11.36924 -11.16494 -11.11862 -10.99848 -10.80045 -9.75375 -9.31590 -8.84950 -7.93365 -5.19137 1.38660 1.42992 1.51000 1.82985 2.15172 2.54392 3.38230 3.48257 3.55501 3.65836 3.76859 3.80889 3.83060 3.92317 4.12293 4.14803 4.18534 4.30583 4.35786 4.43894 4.52837 4.58011 4.62343 4.65169 4.70265 4.71548 4.76855 4.81876 4.87497 4.89073 4.90176 4.93159 4.95542 4.96832 5.06479 5.06854 5.14608 5.18493 5.22612 5.27268 5.28602 5.30065 5.37244 5.42291 5.45751 5.47239 5.53594 5.58939 5.68007 5.89839 6.29218 6.65333 7.32995 7.51423 8.16837 8.40289 9.31499 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.008528 B = 0.005627 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3282.392414 B = 4975.133754 C = 7396.918374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.049 0.951 4 C -0.107 4.107 5 C -0.132 4.132 6 C 0.104 3.896 7 N -0.608 5.608 8 C 0.492 3.508 9 O -0.540 6.540 10 C -0.123 4.123 11 C -0.105 4.105 12 C -0.080 4.080 13 C -0.120 4.120 14 C -0.138 4.138 15 C -0.120 4.120 16 C 0.165 3.835 17 H 0.086 0.914 18 C -0.118 4.118 19 C 0.189 3.811 20 N -0.735 5.735 21 C -0.234 4.234 22 H 0.062 0.938 23 C -0.081 4.081 24 N -0.973 5.973 25 Si 0.973 3.027 26 H -0.282 1.282 27 H -0.273 1.273 28 H -0.292 1.292 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.142 0.858 39 H 0.051 0.949 40 H 0.105 0.895 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.029 0.971 45 H 0.074 0.926 46 H 0.054 0.946 47 H 0.075 0.925 48 H 0.048 0.952 49 H 0.042 0.958 50 H 0.078 0.922 51 H 0.016 0.984 52 H -0.011 1.011 53 H 0.367 0.633 54 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.046 -16.874 19.233 28.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 H 0.067 0.933 4 C -0.145 4.145 5 C -0.170 4.170 6 C -0.017 4.017 7 N -0.342 5.342 8 C 0.281 3.719 9 O -0.417 6.417 10 C -0.144 4.144 11 C -0.142 4.142 12 C -0.080 4.080 13 C -0.177 4.177 14 C -0.195 4.195 15 C -0.158 4.158 16 C 0.061 3.939 17 H 0.103 0.897 18 C -0.155 4.155 19 C 0.063 3.937 20 N -0.375 5.375 21 C -0.366 4.366 22 H 0.080 0.920 23 C -0.273 4.273 24 N -0.625 5.625 25 Si 0.802 3.198 26 H -0.209 1.209 27 H -0.198 1.198 28 H -0.218 1.218 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.159 0.841 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.048 0.952 45 H 0.093 0.907 46 H 0.073 0.927 47 H 0.094 0.906 48 H 0.067 0.933 49 H 0.060 0.940 50 H 0.096 0.904 51 H 0.034 0.966 52 H 0.007 0.993 53 H 0.197 0.803 54 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.860 -16.435 18.814 27.654 hybrid contribution -0.545 1.438 -1.195 1.947 sum 11.315 -14.997 17.619 25.756 Atomic orbital electron populations 1.21763 0.94245 1.02518 1.01438 1.21581 0.96386 0.99284 0.95191 0.93261 1.21560 0.95666 1.01134 0.96111 1.21920 0.95716 1.00844 0.98492 1.22015 0.99282 0.97662 0.82778 1.48162 1.05753 1.61287 1.18988 1.21156 0.90139 0.77957 0.82653 1.90954 1.74072 1.41268 1.35419 1.22776 0.89327 1.02294 0.99959 1.22906 0.95766 0.96913 0.98639 1.21804 0.94374 0.96361 0.95483 1.21575 0.96420 0.97477 1.02214 1.21731 1.00489 0.95447 1.01834 1.22909 0.96688 1.00216 0.96012 1.21180 0.80097 0.98464 0.94174 0.89655 1.22149 0.98504 0.95603 0.99271 1.20749 0.95789 0.90587 0.86531 1.42448 1.75934 1.07320 1.11826 1.19543 1.32840 0.87438 0.96817 0.91959 1.25554 1.03261 1.02643 0.95813 1.69848 1.52599 1.36930 1.03079 0.85141 0.77966 0.80133 0.76597 1.20931 1.19849 1.21803 0.90851 0.91631 0.94735 0.90130 0.90982 0.87711 0.93235 0.89401 0.88064 0.84056 0.93045 0.87643 0.92155 0.90990 0.90791 0.95214 0.90743 0.92651 0.90640 0.93320 0.93957 0.90420 0.96620 0.99302 0.80257 0.94160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.97 71.98 0.65 -2.74 16 2 C -0.10 -2.62 1.92 -10.72 -0.02 -2.64 16 3 H 0.05 1.58 6.14 -2.39 -0.01 1.56 16 4 C -0.11 -1.74 5.17 30.62 0.16 -1.58 16 5 C -0.13 -1.83 6.08 30.67 0.19 -1.65 16 6 C 0.10 1.54 6.29 86.36 0.54 2.08 16 7 N -0.61 -15.48 2.93 -795.02 -2.33 -17.81 16 8 C 0.49 15.78 6.12 87.66 0.54 16.32 16 9 O -0.54 -24.03 9.35 -3.03 -0.03 -24.06 16 10 C -0.12 -2.87 2.37 -11.01 -0.03 -2.90 16 11 C -0.10 -2.24 6.22 31.12 0.19 -2.05 16 12 C -0.08 -1.69 1.39 -51.66 -0.07 -1.76 16 13 C -0.12 -1.62 9.07 71.98 0.65 -0.97 16 14 C -0.14 -3.25 9.19 71.98 0.66 -2.59 16 15 C -0.12 -3.36 6.56 31.12 0.20 -3.16 16 16 C 0.16 4.65 2.67 44.97 0.12 4.77 16 17 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 18 C -0.12 -4.72 4.16 30.59 0.13 -4.60 16 19 C 0.19 9.24 4.23 86.38 0.37 9.60 16 20 N -0.73 -44.20 5.54 -343.46 -1.90 -46.11 16 21 C -0.23 -14.95 9.99 84.03 0.84 -14.11 16 22 H 0.06 3.88 7.83 -2.91 -0.02 3.86 16 23 C -0.08 -5.19 5.50 84.86 0.47 -4.72 16 24 N -0.97 -65.69 13.06 21.65 0.28 -65.41 16 25 Si 0.97 50.64 29.55 68.60 2.03 52.67 16 26 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 27 H -0.27 -13.57 7.11 99.48 0.71 -12.86 16 28 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.03 1.03 6.81 -2.39 -0.02 1.01 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.10 1.14 5.33 -2.39 -0.01 1.13 16 38 H 0.14 2.22 7.14 -2.39 -0.02 2.20 16 39 H 0.05 1.49 7.92 -2.39 -0.02 1.47 16 40 H 0.11 1.49 7.78 -2.39 -0.02 1.47 16 41 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 0.76 7.34 -2.39 -0.02 0.74 16 44 H 0.03 0.86 7.95 -2.38 -0.02 0.85 16 45 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.07 1.90 8.10 -2.39 -0.02 1.88 16 48 H 0.05 1.89 7.39 -2.39 -0.02 1.87 16 49 H 0.04 1.70 7.05 -2.38 -0.02 1.68 16 50 H 0.08 3.57 5.69 -24.47 -0.14 3.43 16 51 H 0.02 0.82 5.37 -2.39 -0.01 0.81 16 52 H -0.01 -0.52 6.61 -2.39 -0.02 -0.54 16 53 H 0.37 23.69 7.67 -92.71 -0.71 22.98 16 54 H 0.25 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -82.18 395.80 3.66 -78.52 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: 0.03 Total: 34.88 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 5.58 Total: -12.68 kcal Atomic # 7 Polarization: -125.38 SS G_CDS: -3.95 Total: -129.33 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.03 Total: -24.06 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.03 Total: 52.67 kcal Total: -82.18 3.66 -78.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691991635.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.444 kcal (2) G-P(sol) polarization free energy of solvation -82.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds