Wall clock time and date at job start Tue Mar 31 2020 15:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.50233 * 2 1 4 4 C 1.53046 * 109.49646 * 239.90672 * 2 1 3 5 5 C 1.53038 * 109.54043 * 178.68357 * 4 2 1 6 6 C 1.53192 * 109.31374 * 61.36465 * 5 4 2 7 7 N 1.46931 * 108.77528 * 305.36666 * 6 5 4 8 8 C 1.34771 * 120.62917 * 233.63085 * 7 6 5 9 9 O 1.21290 * 119.99834 * 186.40126 * 8 7 6 10 10 C 1.50695 * 120.00235 * 6.39741 * 8 7 6 11 11 C 1.53780 * 113.61919 * 277.50157 * 10 8 7 12 12 C 1.53780 * 87.08049 * 220.01790 * 11 10 8 13 13 C 1.52995 * 113.61550 * 270.87986 * 12 11 10 14 14 C 1.53000 * 113.69024 * 139.99213 * 12 11 10 15 15 C 1.53775 * 87.08493 * 25.43300 * 12 11 10 16 16 C 1.46926 * 118.73892 * 53.60897 * 7 6 5 17 17 H 1.09001 * 109.70666 * 66.24615 * 16 7 6 18 18 C 1.52998 * 109.58858 * 186.60456 * 16 7 6 19 19 C 1.53007 * 109.46982 * 65.84126 * 18 16 7 20 20 N 1.46497 * 109.46835 * 175.74223 * 19 18 16 21 21 C 1.36938 * 119.99855 * 179.97438 * 20 19 18 22 22 H 1.08007 * 119.99803 * 0.02562 * 21 20 19 23 23 C 1.38810 * 120.00213 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99923 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00212 * 180.27841 * 23 21 20 26 26 H 1.48497 * 109.46938 * 179.72384 * 25 23 21 27 27 H 1.48498 * 109.46826 * 299.72444 * 25 23 21 28 28 H 1.48504 * 109.46931 * 59.72528 * 25 23 21 29 29 H 1.09002 * 109.46851 * 299.93302 * 1 2 3 30 30 H 1.09001 * 109.47229 * 59.92803 * 1 2 3 31 31 H 1.08999 * 109.47438 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46086 * 298.70866 * 4 2 1 33 33 H 1.08999 * 109.46022 * 58.66028 * 4 2 1 34 34 H 1.08997 * 109.49657 * 181.31552 * 5 4 2 35 35 H 1.08997 * 109.49502 * 301.41187 * 5 4 2 36 36 H 1.09003 * 109.58793 * 65.15058 * 6 5 4 37 37 H 1.08994 * 109.59100 * 185.57958 * 6 5 4 38 38 H 1.09002 * 112.84689 * 48.81130 * 10 8 7 39 39 H 1.09004 * 113.60974 * 334.56830 * 11 10 8 40 40 H 1.08997 * 113.61756 * 105.46775 * 11 10 8 41 41 H 1.09000 * 109.47551 * 157.50044 * 13 12 11 42 42 H 1.09006 * 109.47268 * 277.50138 * 13 12 11 43 43 H 1.09001 * 109.47084 * 37.49496 * 13 12 11 44 44 H 1.09003 * 109.47081 * 322.46200 * 14 12 11 45 45 H 1.08996 * 109.47689 * 82.45847 * 14 12 11 46 46 H 1.09000 * 109.47630 * 202.46658 * 14 12 11 47 47 H 1.08996 * 113.61577 * 220.02609 * 15 12 11 48 48 H 1.09000 * 113.69435 * 89.12604 * 15 12 11 49 49 H 1.08996 * 109.47016 * 305.84105 * 18 16 7 50 50 H 1.08991 * 109.47422 * 185.83923 * 18 16 7 51 51 H 1.08990 * 109.47126 * 55.74087 * 19 18 16 52 52 H 1.09006 * 109.46822 * 295.73520 * 19 18 16 53 53 H 0.96999 * 120.00475 * 0.02562 * 20 19 18 54 54 H 0.97001 * 120.00317 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7234 -1.2482 5 6 3.5708 -0.6954 -1.2660 6 6 4.1053 -1.4268 -0.0306 7 7 3.5046 -0.8289 1.1697 8 6 4.2812 -0.3852 2.1778 9 8 3.7738 -0.0011 3.2103 10 6 5.7800 -0.3663 2.0223 11 6 6.4460 -1.7232 2.3054 12 6 7.5618 -0.9387 3.0156 13 6 8.7000 -0.5143 2.0855 14 6 8.0606 -1.6051 4.2992 15 6 6.5212 0.1669 3.2598 16 6 2.0413 -0.7236 1.2497 17 1 1.6033 -1.7205 1.2997 18 6 1.6518 0.0710 2.4978 19 6 2.1347 1.5157 2.3540 20 7 1.6741 2.3010 3.5017 21 6 1.9881 3.6309 3.5916 22 1 2.5750 4.1008 2.8162 23 6 1.5512 4.3752 4.6788 24 7 0.8356 3.8027 5.6235 25 14 1.9730 6.1911 4.7976 26 1 1.3877 6.7549 6.0405 27 1 3.4485 6.3557 4.8263 28 1 1.4179 6.9063 3.6204 29 1 -0.3633 0.5128 0.8906 30 1 -0.3634 0.5150 -0.8893 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6966 -1.7576 -1.2350 33 1 1.6581 -0.2250 -2.1389 34 1 3.9333 -1.1903 -2.1669 35 1 3.9158 0.3385 -1.2543 36 1 3.8375 -2.4819 -0.0863 37 1 5.1895 -1.3247 0.0139 38 1 6.1028 0.0936 1.0882 39 1 5.8682 -2.3622 2.9734 40 1 6.7805 -2.2414 1.4068 41 1 9.2253 0.3367 2.5189 42 1 9.3951 -1.3446 1.9597 43 1 8.2907 -0.2330 1.1152 44 1 7.2197 -2.0599 4.8230 45 1 8.7915 -2.3741 4.0491 46 1 8.5259 -0.8564 4.9403 47 1 6.9163 1.1745 3.1314 48 1 5.9634 0.0460 4.1885 49 1 2.1142 -0.3811 3.3753 50 1 0.5679 0.0599 2.6120 51 1 1.7324 1.9435 1.4359 52 1 3.2240 1.5325 2.3159 53 1 1.1473 1.8789 4.1982 54 1 0.5299 4.3228 6.3830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691991636.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:51 Heat of formation + Delta-G solvation = -11.963647 kcal Electronic energy + Delta-G solvation = -29955.133466 eV Core-core repulsion = 26313.479190 eV Total energy + Delta-G solvation = -3641.654276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.18635 -40.28687 -38.32922 -36.79186 -35.04604 -33.99484 -32.59377 -31.82470 -29.88333 -28.24658 -27.61605 -26.73508 -26.64224 -25.36560 -24.02901 -23.65023 -22.20922 -20.79888 -19.67264 -19.18548 -19.07054 -17.96615 -17.03758 -16.73630 -16.47168 -16.13592 -15.79509 -15.65941 -15.34881 -15.06243 -15.01815 -14.62521 -14.52178 -14.21923 -14.05449 -13.79443 -13.66902 -13.53189 -13.35673 -13.18858 -12.89666 -12.88239 -12.74128 -12.56157 -12.44550 -12.39251 -12.28077 -12.10386 -11.98614 -11.92521 -11.67314 -11.64463 -11.58621 -11.36126 -11.16342 -11.13773 -10.99902 -10.81727 -9.71118 -9.40636 -8.87107 -7.94375 -5.21515 1.39826 1.45451 1.51574 1.77499 2.14255 2.54477 3.37223 3.46838 3.55405 3.64794 3.74351 3.79829 3.83823 3.90921 4.09538 4.13857 4.16154 4.30283 4.34877 4.45633 4.52013 4.57302 4.61918 4.63784 4.69939 4.72305 4.77299 4.84148 4.86409 4.88974 4.91083 4.92226 4.94809 4.98458 5.05311 5.06812 5.14254 5.18997 5.23628 5.26329 5.28500 5.29039 5.35842 5.41826 5.46619 5.48548 5.52402 5.59361 5.65174 5.87144 6.27826 6.62831 7.31659 7.46435 8.13400 8.37346 9.30080 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.008795 B = 0.004956 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3182.980377 B = 5647.921335 C = 7978.984048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.052 0.948 4 C -0.107 4.107 5 C -0.133 4.133 6 C 0.104 3.896 7 N -0.608 5.608 8 C 0.501 3.499 9 O -0.548 6.548 10 C -0.130 4.130 11 C -0.097 4.097 12 C -0.079 4.079 13 C -0.125 4.125 14 C -0.136 4.136 15 C -0.124 4.124 16 C 0.165 3.835 17 H 0.083 0.917 18 C -0.125 4.125 19 C 0.175 3.825 20 N -0.740 5.740 21 C -0.240 4.240 22 H 0.065 0.935 23 C -0.080 4.080 24 N -0.973 5.973 25 Si 0.976 3.024 26 H -0.290 1.290 27 H -0.280 1.280 28 H -0.275 1.275 29 H 0.032 0.968 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.128 0.872 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.043 0.957 45 H 0.075 0.925 46 H 0.051 0.949 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.084 0.916 50 H 0.042 0.958 51 H -0.001 1.001 52 H 0.020 0.980 53 H 0.367 0.633 54 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.612 -18.158 -17.978 28.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 H 0.071 0.929 4 C -0.145 4.145 5 C -0.171 4.171 6 C -0.017 4.017 7 N -0.341 5.341 8 C 0.291 3.709 9 O -0.427 6.427 10 C -0.151 4.151 11 C -0.134 4.134 12 C -0.079 4.079 13 C -0.182 4.182 14 C -0.193 4.193 15 C -0.162 4.162 16 C 0.062 3.938 17 H 0.101 0.899 18 C -0.163 4.163 19 C 0.049 3.951 20 N -0.381 5.381 21 C -0.372 4.372 22 H 0.083 0.917 23 C -0.272 4.272 24 N -0.624 5.624 25 Si 0.804 3.196 26 H -0.216 1.216 27 H -0.206 1.206 28 H -0.201 1.201 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.145 0.855 39 H 0.090 0.910 40 H 0.124 0.876 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.094 0.906 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.102 0.898 50 H 0.061 0.939 51 H 0.016 0.984 52 H 0.038 0.962 53 H 0.198 0.802 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 13.429 -17.811 -17.513 28.360 hybrid contribution -0.631 1.451 1.110 1.933 sum 12.798 -16.360 -16.403 26.466 Atomic orbital electron populations 1.21763 0.94337 1.02453 1.01422 1.21593 0.96327 0.99448 0.95122 0.92924 1.21562 0.95733 1.01091 0.96101 1.21943 0.95667 1.00961 0.98535 1.22034 0.99297 0.97657 0.82720 1.48163 1.05795 1.61168 1.18981 1.21080 0.90161 0.76430 0.83252 1.90823 1.74255 1.47059 1.30551 1.22789 0.89493 1.01558 1.01285 1.22941 0.95497 0.93363 1.01627 1.21776 0.94246 0.95170 0.96693 1.21604 0.96480 1.01772 0.98321 1.21722 1.01018 1.00432 0.96105 1.22956 0.97191 0.98859 0.97172 1.21145 0.80041 0.98445 0.94195 0.89888 1.22196 0.98630 0.95686 0.99740 1.20975 0.96075 0.90163 0.87851 1.42512 1.63898 1.07175 1.24537 1.19536 1.26213 0.87202 1.04252 0.91709 1.25597 1.01646 1.02848 0.97086 1.69845 1.43149 1.36960 1.12470 0.85176 0.77703 0.79777 0.76932 1.21586 1.20629 1.20072 0.94841 0.91607 0.90919 0.90231 0.90919 0.87677 0.93000 0.89424 0.87960 0.85470 0.91048 0.87562 0.92721 0.90511 0.91500 0.93750 0.90616 0.93020 0.92297 0.92259 0.89785 0.93938 0.98381 0.96242 0.80230 0.94071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.97 71.98 0.65 -2.85 16 2 C -0.11 -2.66 1.99 -10.71 -0.02 -2.69 16 3 H 0.05 1.68 5.93 -2.39 -0.01 1.67 16 4 C -0.11 -1.75 5.17 30.62 0.16 -1.59 16 5 C -0.13 -1.82 6.08 30.67 0.19 -1.63 16 6 C 0.10 1.53 6.30 86.36 0.54 2.08 16 7 N -0.61 -15.42 2.94 -795.02 -2.34 -17.76 16 8 C 0.50 15.88 5.82 87.66 0.51 16.39 16 9 O -0.55 -23.88 9.76 -3.06 -0.03 -23.91 16 10 C -0.13 -3.04 2.38 -11.01 -0.03 -3.07 16 11 C -0.10 -1.66 6.28 31.12 0.20 -1.46 16 12 C -0.08 -1.45 1.39 -51.66 -0.07 -1.52 16 13 C -0.12 -1.68 9.07 71.98 0.65 -1.03 16 14 C -0.14 -2.46 9.19 71.98 0.66 -1.80 16 15 C -0.12 -3.41 6.56 31.12 0.20 -3.21 16 16 C 0.17 4.73 2.66 44.98 0.12 4.85 16 17 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 18 C -0.13 -5.05 4.20 30.60 0.13 -4.93 16 19 C 0.18 8.53 4.94 86.38 0.43 8.96 16 20 N -0.74 -44.42 5.60 -343.45 -1.92 -46.34 16 21 C -0.24 -15.23 9.99 84.03 0.84 -14.39 16 22 H 0.06 3.99 7.83 -2.91 -0.02 3.97 16 23 C -0.08 -5.08 5.50 84.86 0.47 -4.62 16 24 N -0.97 -65.24 13.06 21.65 0.28 -64.96 16 25 Si 0.98 50.16 29.55 68.60 2.03 52.18 16 26 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 27 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 29 H 0.03 1.03 6.75 -2.39 -0.02 1.02 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 34 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 1.13 5.45 -2.39 -0.01 1.11 16 38 H 0.13 2.39 7.03 -2.39 -0.02 2.38 16 39 H 0.07 1.45 7.92 -2.38 -0.02 1.43 16 40 H 0.11 1.10 7.92 -2.39 -0.02 1.08 16 41 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.07 0.78 7.34 -2.39 -0.02 0.76 16 44 H 0.04 0.91 7.95 -2.39 -0.02 0.89 16 45 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 48 H 0.06 2.09 7.39 -2.39 -0.02 2.07 16 49 H 0.08 3.87 5.58 -30.76 -0.17 3.70 16 50 H 0.04 1.75 6.93 -2.39 -0.02 1.73 16 51 H 0.00 -0.07 5.96 -2.39 -0.01 -0.08 16 52 H 0.02 1.02 5.04 -2.38 -0.01 1.00 16 53 H 0.37 23.55 7.67 -92.71 -0.71 22.84 16 54 H 0.25 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -81.13 395.52 3.64 -77.49 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: 0.00 Total: 35.81 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 5.62 Total: -12.51 kcal Atomic # 7 Polarization: -125.08 SS G_CDS: -3.98 Total: -129.06 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.03 Total: -23.91 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 2.03 Total: 52.18 kcal Total: -81.13 3.64 -77.49 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691991636.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.526 kcal (2) G-P(sol) polarization free energy of solvation -81.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds