Wall clock time and date at job start Tue Mar 31 2020 15:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.52134 * 2 1 4 4 C 1.53041 * 109.49396 * 239.91973 * 2 1 3 5 5 C 1.53040 * 109.54321 * 301.41336 * 4 2 1 6 6 C 1.53187 * 109.30985 * 298.63900 * 5 4 2 7 7 N 1.46958 * 108.89080 * 54.55714 * 6 5 4 8 8 C 1.34775 * 120.65756 * 126.46554 * 7 6 5 9 9 O 1.21283 * 120.00171 * 185.57090 * 8 7 6 10 10 C 1.50703 * 120.00171 * 5.56871 * 8 7 6 11 11 C 1.53781 * 113.61446 * 277.50474 * 10 8 7 12 12 C 1.53785 * 87.07814 * 220.01567 * 11 10 8 13 13 C 1.53001 * 113.61034 * 270.88081 * 12 11 10 14 14 C 1.52994 * 113.68926 * 139.99176 * 12 11 10 15 15 C 1.53772 * 113.61948 * 180.02562 * 10 8 7 16 16 C 1.46933 * 118.71313 * 306.63902 * 7 6 5 17 17 H 1.09001 * 109.58670 * 293.50351 * 16 7 6 18 18 C 1.53003 * 109.58329 * 173.22236 * 16 7 6 19 19 C 1.52998 * 109.46530 * 180.50602 * 18 16 7 20 20 N 1.46509 * 109.46857 * 175.07807 * 19 18 16 21 21 C 1.36936 * 119.99885 * 180.27406 * 20 19 18 22 22 H 1.08005 * 120.00360 * 359.72232 * 21 20 19 23 23 C 1.38815 * 120.00217 * 179.72549 * 21 20 19 24 24 N 1.31619 * 120.00334 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99667 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47280 * 89.99896 * 25 23 21 27 27 H 1.48491 * 109.47229 * 210.00151 * 25 23 21 28 28 H 1.48507 * 109.47154 * 330.00292 * 25 23 21 29 29 H 1.09003 * 109.47027 * 299.91435 * 1 2 3 30 30 H 1.08998 * 109.46969 * 59.91910 * 1 2 3 31 31 H 1.08998 * 109.46770 * 179.91788 * 1 2 3 32 32 H 1.09003 * 109.45927 * 61.43949 * 4 2 1 33 33 H 1.08998 * 109.45512 * 181.40559 * 4 2 1 34 34 H 1.09001 * 109.49350 * 58.58617 * 5 4 2 35 35 H 1.08991 * 109.49835 * 178.64939 * 5 4 2 36 36 H 1.09001 * 109.58859 * 174.42150 * 6 5 4 37 37 H 1.08999 * 109.58579 * 294.84150 * 6 5 4 38 38 H 1.09005 * 112.84403 * 48.80718 * 10 8 7 39 39 H 1.08997 * 113.61252 * 334.56261 * 11 10 8 40 40 H 1.08997 * 113.61499 * 105.46904 * 11 10 8 41 41 H 1.09005 * 109.46816 * 157.50080 * 13 12 11 42 42 H 1.09002 * 109.47283 * 277.49647 * 13 12 11 43 43 H 1.08994 * 109.47316 * 37.49835 * 13 12 11 44 44 H 1.09001 * 109.47270 * 322.46023 * 14 12 11 45 45 H 1.09007 * 109.47476 * 82.46283 * 14 12 11 46 46 H 1.09001 * 109.47320 * 202.46294 * 14 12 11 47 47 H 1.08996 * 113.61738 * 254.53455 * 15 10 8 48 48 H 1.09006 * 113.61515 * 25.43286 * 15 10 8 49 49 H 1.08992 * 109.47259 * 60.50526 * 18 16 7 50 50 H 1.09001 * 109.46815 * 300.49969 * 18 16 7 51 51 H 1.09005 * 109.47711 * 55.07974 * 19 18 16 52 52 H 1.09003 * 109.47467 * 295.07285 * 19 18 16 53 53 H 0.96996 * 119.99640 * 359.97438 * 20 19 18 54 54 H 0.96991 * 120.00021 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 1.5030 -2.1558 -1.2661 6 6 2.0140 -2.9040 -0.0310 7 7 1.6543 -2.1391 1.1712 8 6 0.9794 -2.7233 2.1811 9 8 0.6004 -2.0583 3.1218 10 6 0.6957 -4.2028 2.1413 11 6 -0.5389 -4.5710 1.3016 12 6 -0.8757 -5.6015 2.3923 13 6 -0.2405 -6.9733 2.1564 14 6 -2.3681 -5.6860 2.7183 15 6 -0.0823 -4.7141 3.3652 16 6 2.0413 -0.7238 1.2495 17 1 3.1273 -0.6442 1.2992 18 6 1.4230 -0.0913 2.4979 19 6 1.8173 1.3852 2.5700 20 7 1.1313 2.0192 3.6987 21 6 1.3268 3.3493 3.9590 22 1 1.9902 3.9300 3.3351 23 6 0.6724 3.9515 5.0249 24 7 0.8599 5.2300 5.2749 25 14 -0.4754 2.9474 6.1037 26 1 0.2926 2.3586 7.2301 27 1 -1.5455 3.8262 6.6401 28 1 -1.0858 1.8591 5.2985 29 1 -0.3633 0.5125 0.8908 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 1.6988 -0.1957 -2.1389 33 1 3.1305 -0.7446 -1.2352 34 1 0.4132 -2.1354 -1.2542 35 1 1.8475 -2.6625 -2.1675 36 1 1.5554 -3.8919 0.0136 37 1 3.0979 -3.0043 -0.0870 38 1 1.5788 -4.7969 1.9055 39 1 -1.2686 -3.7653 1.2218 40 1 -0.2942 -5.0188 0.3385 41 1 -0.1717 -7.5094 3.1030 42 1 -0.8552 -7.5434 1.4598 43 1 0.7578 -6.8444 1.7384 44 1 -2.8056 -4.6883 2.6795 45 1 -2.8634 -6.3284 1.9901 46 1 -2.4989 -6.1013 3.7175 47 1 0.5310 -5.2773 4.0684 48 1 -0.6874 -3.9475 3.8494 49 1 1.7871 -0.6084 3.3856 50 1 0.3373 -0.1755 2.4480 51 1 1.5303 1.8836 1.6440 52 1 2.8954 1.4671 2.7078 53 1 0.5352 1.4978 4.2588 54 1 0.4030 5.6506 6.0199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691991637.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:55 Heat of formation + Delta-G solvation = -24.266740 kcal Electronic energy + Delta-G solvation = -29605.958298 eV Core-core repulsion = 25963.770520 eV Total energy + Delta-G solvation = -3642.187778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.14028 -40.34345 -38.39501 -37.15136 -34.93580 -34.15404 -32.94463 -31.74667 -30.10893 -28.25198 -27.94606 -26.72998 -26.66884 -25.19862 -24.59650 -23.39281 -22.20112 -20.77431 -19.75780 -19.22671 -19.12898 -17.89735 -17.15644 -16.77062 -16.43390 -16.14647 -16.02423 -15.83406 -15.22446 -15.05165 -14.98864 -14.82283 -14.77548 -14.42659 -14.11895 -13.93066 -13.81690 -13.72892 -13.56808 -13.24521 -13.02006 -12.99965 -12.75408 -12.53509 -12.44953 -12.40215 -12.31795 -12.13919 -11.96883 -11.88630 -11.80512 -11.73053 -11.65040 -11.32669 -11.23933 -11.15573 -11.01066 -10.95805 -9.91554 -9.44029 -9.32685 -8.08723 -5.40814 1.31887 1.33188 1.42053 1.69739 2.04259 2.42238 3.22366 3.39839 3.47069 3.59772 3.69798 3.74038 3.79224 3.89118 3.93499 4.11505 4.13736 4.24088 4.33811 4.39743 4.41589 4.50955 4.56317 4.58169 4.67870 4.71181 4.75904 4.77278 4.78623 4.82419 4.85471 4.89467 4.92189 4.97194 4.99222 5.06019 5.11350 5.18296 5.21608 5.23560 5.24365 5.26895 5.31608 5.40491 5.45298 5.46639 5.55796 5.63566 5.69154 5.77523 6.16871 6.55829 7.01691 7.32990 7.79895 7.99233 9.13011 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012091 B = 0.003908 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.148173 B = 7163.695546 C = 8887.176618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 H 0.072 0.928 4 C -0.110 4.110 5 C -0.132 4.132 6 C 0.103 3.897 7 N -0.602 5.602 8 C 0.509 3.491 9 O -0.574 6.574 10 C -0.128 4.128 11 C -0.105 4.105 12 C -0.081 4.081 13 C -0.125 4.125 14 C -0.137 4.137 15 C -0.120 4.120 16 C 0.159 3.841 17 H 0.077 0.923 18 C -0.095 4.095 19 C 0.148 3.852 20 N -0.761 5.761 21 C -0.234 4.234 22 H 0.061 0.939 23 C -0.059 4.059 24 N -0.980 5.980 25 Si 0.951 3.049 26 H -0.278 1.278 27 H -0.286 1.286 28 H -0.266 1.266 29 H 0.027 0.973 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.137 0.863 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.040 0.960 45 H 0.070 0.930 46 H 0.055 0.945 47 H 0.073 0.927 48 H 0.061 0.939 49 H 0.058 0.942 50 H 0.060 0.940 51 H 0.030 0.970 52 H 0.018 0.982 53 H 0.361 0.639 54 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 -31.146 -17.743 35.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.124 4.124 3 H 0.090 0.910 4 C -0.147 4.147 5 C -0.170 4.170 6 C -0.019 4.019 7 N -0.334 5.334 8 C 0.299 3.701 9 O -0.454 6.454 10 C -0.149 4.149 11 C -0.142 4.142 12 C -0.081 4.081 13 C -0.182 4.182 14 C -0.195 4.195 15 C -0.158 4.158 16 C 0.055 3.945 17 H 0.095 0.905 18 C -0.133 4.133 19 C 0.022 3.978 20 N -0.406 5.406 21 C -0.365 4.365 22 H 0.079 0.921 23 C -0.251 4.251 24 N -0.631 5.631 25 Si 0.779 3.221 26 H -0.205 1.205 27 H -0.213 1.213 28 H -0.192 1.192 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.155 0.845 39 H 0.083 0.917 40 H 0.121 0.879 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.079 0.921 51 H 0.047 0.953 52 H 0.036 0.964 53 H 0.194 0.806 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.008 -30.608 -17.314 35.166 hybrid contribution -0.708 0.696 1.372 1.693 sum -0.717 -29.912 -15.943 33.903 Atomic orbital electron populations 1.21795 0.95619 1.01440 1.00769 1.21546 0.96115 0.99618 0.95072 0.90964 1.21537 1.01026 0.96021 0.96138 1.21951 1.01348 0.95423 0.98246 1.22064 1.01494 0.95602 0.82705 1.48216 1.55886 1.10356 1.18962 1.21225 0.76593 0.90905 0.81421 1.90806 1.52585 1.65215 1.36768 1.22828 1.00618 0.90745 1.00736 1.22978 0.94708 0.98157 0.98401 1.21772 0.95444 0.95309 0.95533 1.21604 1.00932 0.93398 1.02235 1.21734 0.94544 1.01319 1.01872 1.22954 0.98363 0.98586 0.95883 1.21102 0.98369 0.80591 0.94414 0.90465 1.22013 1.01064 0.92525 0.97678 1.21016 0.94505 0.93040 0.89285 1.42798 1.55214 1.07506 1.35038 1.19095 1.21475 0.85886 1.10043 0.92131 1.25411 1.02368 0.96827 1.00491 1.69858 1.48768 1.11575 1.32926 0.85460 0.79181 0.78208 0.79255 1.20459 1.21258 1.19171 0.95354 0.91981 0.92290 0.90843 0.90796 0.91776 0.87935 0.87479 0.89867 0.84505 0.91660 0.87886 0.92269 0.91126 0.91199 0.94043 0.91129 0.92577 0.90851 0.91985 0.92359 0.92141 0.95259 0.96360 0.80621 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.20 71.98 0.59 -3.03 16 2 C -0.10 -2.45 2.29 -10.72 -0.02 -2.48 16 3 H 0.07 1.93 6.65 -2.39 -0.02 1.91 16 4 C -0.11 -1.64 5.43 30.62 0.17 -1.48 16 5 C -0.13 -1.41 5.74 30.67 0.18 -1.24 16 6 C 0.10 1.18 6.27 86.35 0.54 1.72 16 7 N -0.60 -12.83 2.43 -794.94 -1.93 -14.76 16 8 C 0.51 13.04 7.13 87.66 0.63 13.66 16 9 O -0.57 -20.95 11.30 -3.04 -0.03 -20.99 16 10 C -0.13 -2.14 2.38 -11.02 -0.03 -2.16 16 11 C -0.10 -1.39 6.13 31.12 0.19 -1.20 16 12 C -0.08 -1.07 1.39 -51.67 -0.07 -1.14 16 13 C -0.12 -1.05 9.07 71.98 0.65 -0.40 16 14 C -0.14 -1.97 9.19 71.98 0.66 -1.31 16 15 C -0.12 -2.32 6.55 31.10 0.20 -2.12 16 16 C 0.16 4.26 2.72 44.97 0.12 4.38 16 17 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 18 C -0.09 -3.55 2.75 30.59 0.08 -3.46 16 19 C 0.15 6.49 6.04 86.38 0.52 7.01 16 20 N -0.76 -41.11 5.41 -343.42 -1.86 -42.97 16 21 C -0.23 -14.63 10.47 84.03 0.88 -13.75 16 22 H 0.06 4.04 8.06 -2.91 -0.02 4.02 16 23 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 24 N -0.98 -66.05 13.97 21.65 0.30 -65.75 16 25 Si 0.95 50.40 27.74 68.60 1.90 52.31 16 26 H -0.28 -14.41 7.11 99.48 0.71 -13.71 16 27 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 28 H -0.27 -13.57 6.52 99.48 0.65 -12.92 16 29 H 0.03 0.94 6.35 -2.39 -0.02 0.92 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.42 5.97 -2.39 -0.01 1.41 16 32 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 0.82 6.33 -2.39 -0.02 0.80 16 35 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.11 0.75 5.27 -2.39 -0.01 0.74 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.14 1.49 7.25 -2.38 -0.02 1.47 16 39 H 0.06 1.17 7.92 -2.39 -0.02 1.15 16 40 H 0.10 0.77 7.70 -2.39 -0.02 0.75 16 41 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.07 0.43 7.34 -2.39 -0.02 0.42 16 44 H 0.04 0.72 7.95 -2.39 -0.02 0.70 16 45 H 0.07 0.78 8.14 -2.38 -0.02 0.77 16 46 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 48 H 0.06 1.65 7.39 -2.38 -0.02 1.63 16 49 H 0.06 2.44 6.48 -2.39 -0.02 2.43 16 50 H 0.06 2.51 5.21 -2.39 -0.01 2.50 16 51 H 0.03 1.27 6.32 -2.38 -0.02 1.26 16 52 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 53 H 0.36 19.50 5.53 -92.71 -0.51 18.99 16 54 H 0.26 16.55 8.31 -92.71 -0.77 15.78 16 Total: -1.00 -79.59 392.56 4.44 -75.15 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.30 Total: 27.30 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 5.76 Total: -10.28 kcal Atomic # 7 Polarization: -120.00 SS G_CDS: -3.48 Total: -123.48 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.03 Total: -20.99 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 1.90 Total: 52.31 kcal Total: -79.59 4.44 -75.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691991637.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.882 kcal (2) G-P(sol) polarization free energy of solvation -79.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds