Wall clock time and date at job start Tue Mar 31 2020 15:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.49825 * 2 1 4 4 C 1.53041 * 109.51862 * 120.07589 * 2 1 3 5 5 C 1.53035 * 109.54048 * 58.60549 * 4 2 1 6 6 C 1.53193 * 109.31477 * 61.36321 * 5 4 2 7 7 N 1.46928 * 108.77342 * 305.36596 * 6 5 4 8 8 C 1.34773 * 120.62987 * 233.63060 * 7 6 5 9 9 O 1.21279 * 119.99906 * 185.34744 * 8 7 6 10 10 C 1.50696 * 120.00076 * 5.34355 * 8 7 6 11 11 C 1.53780 * 113.61729 * 279.13566 * 10 8 7 12 12 C 1.53950 * 87.02210 * 220.04791 * 11 10 8 13 13 C 1.52998 * 113.53917 * 270.81065 * 12 11 10 14 14 C 1.53005 * 113.74247 * 139.94541 * 12 11 10 15 15 C 1.53787 * 113.61221 * 181.52869 * 10 8 7 16 16 C 1.46924 * 118.73910 * 53.60559 * 7 6 5 17 17 H 1.09008 * 109.70260 * 66.24764 * 16 7 6 18 18 C 1.52999 * 109.58774 * 186.60211 * 16 7 6 19 19 C 1.53000 * 109.46897 * 177.79036 * 18 16 7 20 20 N 1.46504 * 109.46855 * 174.92617 * 19 18 16 21 21 C 1.36938 * 119.99819 * 180.02562 * 20 19 18 22 22 H 1.07999 * 120.00093 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99869 * 180.02562 * 21 20 19 24 24 N 1.31617 * 119.99925 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99946 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.46955 * 179.97438 * 25 23 21 27 27 H 1.48491 * 109.47383 * 59.99955 * 25 23 21 28 28 H 1.48500 * 109.47133 * 299.99651 * 25 23 21 29 29 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47440 * 300.07232 * 1 2 3 31 31 H 1.08999 * 109.46554 * 60.06915 * 1 2 3 32 32 H 1.09000 * 109.46154 * 178.62572 * 4 2 1 33 33 H 1.09007 * 109.46095 * 298.58178 * 4 2 1 34 34 H 1.08999 * 109.50236 * 181.31557 * 5 4 2 35 35 H 1.09003 * 109.49596 * 301.37409 * 5 4 2 36 36 H 1.08997 * 109.58600 * 65.15118 * 6 5 4 37 37 H 1.09005 * 109.58633 * 185.43928 * 6 5 4 38 38 H 1.09007 * 112.85197 * 50.33819 * 10 8 7 39 39 H 1.09003 * 113.61343 * 334.57177 * 11 10 8 40 40 H 1.09002 * 113.61094 * 105.46975 * 11 10 8 41 41 H 1.09003 * 109.47077 * 157.49486 * 13 12 11 42 42 H 1.08994 * 109.47590 * 277.49793 * 13 12 11 43 43 H 1.08997 * 109.47154 * 37.49794 * 13 12 11 44 44 H 1.09004 * 109.46785 * 322.40063 * 14 12 11 45 45 H 1.08993 * 109.47041 * 82.40310 * 14 12 11 46 46 H 1.08998 * 109.47191 * 202.40429 * 14 12 11 47 47 H 1.09001 * 113.61408 * 254.52937 * 15 10 8 48 48 H 1.09000 * 113.61792 * 25.35524 * 15 10 8 49 49 H 1.08996 * 109.47024 * 57.79426 * 18 16 7 50 50 H 1.08997 * 109.47174 * 297.79077 * 18 16 7 51 51 H 1.09000 * 109.47252 * 54.93145 * 19 18 16 52 52 H 1.09000 * 109.47330 * 294.92201 * 19 18 16 53 53 H 0.96999 * 120.00423 * 359.97438 * 20 19 18 54 54 H 0.96996 * 120.00454 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7229 1.2483 5 6 1.5042 -2.1558 1.2660 6 6 2.0153 -2.9038 0.0307 7 7 1.6522 -2.1381 -1.1696 8 6 0.9747 -2.7221 -2.1777 9 8 0.7655 -2.1088 -3.2029 10 6 0.4773 -4.1370 -2.0312 11 6 1.5571 -5.2000 -2.2939 12 6 0.4698 -6.0079 -3.0255 13 6 -0.3104 -6.9523 -2.1089 14 6 0.9647 -6.6924 -4.3013 15 6 -0.2429 -4.6693 -3.2813 16 6 2.0413 -0.7236 -1.2496 17 1 3.1273 -0.6434 -1.2996 18 6 1.4224 -0.0912 -2.4978 19 6 1.7837 1.3946 -2.5493 20 7 1.2946 1.9729 -3.8034 21 6 1.5035 3.2991 -4.0732 22 1 2.0284 3.9188 -3.3613 23 6 1.0397 3.8471 -5.2612 24 7 0.3996 3.0919 -6.1285 25 14 1.3253 5.6560 -5.6295 26 1 0.7377 5.9907 -6.9517 27 1 2.7841 5.9322 -5.6526 28 1 0.6814 6.4831 -4.5775 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5150 0.8893 31 1 -0.3632 0.5128 -0.8906 32 1 3.1311 -0.7437 1.2350 33 1 1.6992 -0.1957 2.1389 34 1 1.8497 -2.6627 2.1670 35 1 0.4145 -2.1360 1.2550 36 1 3.0993 -3.0036 0.0864 37 1 1.5590 -3.8928 -0.0124 38 1 -0.0772 -4.2971 -1.1065 39 1 2.3590 -4.8556 -2.9470 40 1 1.9250 -5.6817 -1.3880 41 1 -1.2769 -7.1792 -2.5589 42 1 0.2532 -7.8754 -1.9738 43 1 -0.4634 -6.4751 -1.1410 44 1 1.6721 -6.0397 -4.8128 45 1 1.4566 -7.6301 -4.0430 46 1 0.1178 -6.8949 -4.9569 47 1 -1.3260 -4.7234 -3.1715 48 1 0.0649 -4.1788 -4.2048 49 1 0.3385 -0.2005 -2.4610 50 1 1.8079 -0.5899 -3.3870 51 1 2.8665 1.5073 -2.4952 52 1 1.3221 1.9102 -1.7072 53 1 0.8235 1.4162 -4.4430 54 1 0.2522 2.1524 -5.9378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691991638.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:59 Heat of formation + Delta-G solvation = -29.178379 kcal Electronic energy + Delta-G solvation = -29424.516251 eV Core-core repulsion = 25782.115488 eV Total energy + Delta-G solvation = -3642.400763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.17552 -40.38058 -38.44992 -37.26845 -35.09030 -34.20065 -32.50551 -31.77290 -29.76581 -28.26500 -27.87312 -26.73751 -26.60796 -25.40326 -24.62770 -23.74615 -22.15872 -20.77825 -19.52167 -19.32952 -19.10865 -17.90963 -17.35402 -16.68862 -16.59149 -16.39283 -15.81601 -15.58114 -15.38000 -15.27700 -15.14459 -14.97482 -14.74987 -14.43294 -14.18159 -13.85683 -13.79431 -13.59886 -13.50196 -13.14714 -12.81657 -12.79774 -12.70987 -12.59235 -12.47391 -12.42401 -12.34711 -12.02645 -11.91405 -11.86838 -11.79802 -11.68283 -11.46281 -11.32342 -11.19661 -11.18296 -11.03280 -10.94899 -9.94542 -9.52098 -9.17122 -8.46816 -5.39817 1.53427 1.65060 1.65859 1.82342 2.00207 2.68670 3.34766 3.38820 3.44155 3.58096 3.66874 3.72427 3.74367 3.85502 3.92712 4.05793 4.10307 4.17647 4.29280 4.35672 4.37098 4.47248 4.50450 4.54065 4.63345 4.66302 4.69336 4.74323 4.74845 4.76823 4.82259 4.87467 4.88403 4.93297 4.95011 5.04181 5.07362 5.15290 5.16721 5.19407 5.21213 5.23968 5.27409 5.32181 5.39893 5.44823 5.51116 5.51660 5.61073 5.71609 6.40354 6.51313 7.03138 7.29328 7.93044 8.08245 9.04720 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013029 B = 0.003401 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.495196 B = 8231.985978 C = 9942.885930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 H 0.071 0.929 4 C -0.109 4.109 5 C -0.133 4.133 6 C 0.102 3.898 7 N -0.602 5.602 8 C 0.508 3.492 9 O -0.577 6.577 10 C -0.128 4.128 11 C -0.104 4.104 12 C -0.079 4.079 13 C -0.124 4.124 14 C -0.137 4.137 15 C -0.122 4.122 16 C 0.161 3.839 17 H 0.071 0.929 18 C -0.092 4.092 19 C 0.156 3.844 20 N -0.760 5.760 21 C -0.339 4.339 22 H 0.069 0.931 23 C -0.110 4.110 24 N -0.973 5.973 25 Si 1.135 2.865 26 H -0.290 1.290 27 H -0.274 1.274 28 H -0.274 1.274 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.137 0.863 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.040 0.960 45 H 0.072 0.928 46 H 0.055 0.945 47 H 0.071 0.929 48 H 0.059 0.941 49 H 0.049 0.951 50 H 0.056 0.944 51 H 0.012 0.988 52 H 0.022 0.978 53 H 0.356 0.644 54 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.916 -24.112 20.578 31.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 H 0.089 0.911 4 C -0.147 4.147 5 C -0.170 4.170 6 C -0.019 4.019 7 N -0.334 5.334 8 C 0.298 3.702 9 O -0.457 6.457 10 C -0.149 4.149 11 C -0.142 4.142 12 C -0.079 4.079 13 C -0.181 4.181 14 C -0.194 4.194 15 C -0.160 4.160 16 C 0.057 3.943 17 H 0.089 0.911 18 C -0.130 4.130 19 C 0.029 3.971 20 N -0.404 5.404 21 C -0.470 4.470 22 H 0.087 0.913 23 C -0.300 4.300 24 N -0.621 5.621 25 Si 0.958 3.042 26 H -0.216 1.216 27 H -0.200 1.200 28 H -0.200 1.200 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.127 0.873 38 H 0.155 0.845 39 H 0.084 0.916 40 H 0.124 0.876 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.078 0.922 49 H 0.068 0.932 50 H 0.075 0.925 51 H 0.030 0.970 52 H 0.040 0.960 53 H 0.187 0.813 54 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.703 -22.466 19.152 29.645 hybrid contribution -0.076 -0.823 0.147 0.840 sum 2.627 -23.289 19.299 30.360 Atomic orbital electron populations 1.21800 0.95464 1.01574 1.00775 1.21521 0.96209 0.99489 0.94881 0.91064 1.21539 1.00976 0.96083 0.96068 1.21978 1.01473 0.95376 0.98221 1.22084 1.01455 0.95667 0.82725 1.48216 1.55838 1.10252 1.19132 1.21288 0.77142 0.89344 0.82460 1.90814 1.58706 1.65266 1.30924 1.22823 1.00677 0.89471 1.01898 1.23023 0.95148 0.94313 1.01720 1.21813 0.96000 0.93586 0.96541 1.21604 0.99525 0.98529 0.98490 1.21733 1.00749 1.00618 0.96347 1.22973 0.99815 0.96444 0.96767 1.21073 0.98057 0.80724 0.94446 0.91130 1.21930 1.00276 0.92789 0.98013 1.20888 0.95420 0.93390 0.87393 1.42664 1.69322 1.08204 1.20200 1.20458 1.33944 0.87615 1.04990 0.91332 1.27500 0.98605 1.10760 0.93113 1.70975 1.46128 1.06815 1.38229 0.82577 0.76677 0.69052 0.75911 1.21608 1.20028 1.19962 0.92164 0.91472 0.95760 0.90925 0.90432 0.87717 0.91530 0.90036 0.87303 0.84501 0.91596 0.87586 0.92315 0.90894 0.91232 0.94054 0.90895 0.92613 0.91026 0.92205 0.93237 0.92511 0.97013 0.95995 0.81325 0.95061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 8.17 71.98 0.59 -3.11 16 2 C -0.10 -2.50 2.24 -10.72 -0.02 -2.53 16 3 H 0.07 1.96 6.86 -2.39 -0.02 1.94 16 4 C -0.11 -1.69 5.43 30.62 0.17 -1.53 16 5 C -0.13 -1.49 5.74 30.67 0.18 -1.32 16 6 C 0.10 1.32 6.27 86.36 0.54 1.86 16 7 N -0.60 -14.26 2.41 -795.04 -1.92 -16.18 16 8 C 0.51 14.48 7.06 87.66 0.62 15.10 16 9 O -0.58 -23.40 11.46 -3.03 -0.03 -23.44 16 10 C -0.13 -2.41 2.38 -11.01 -0.03 -2.44 16 11 C -0.10 -1.54 6.24 31.18 0.19 -1.34 16 12 C -0.08 -1.18 1.39 -51.59 -0.07 -1.25 16 13 C -0.12 -1.21 9.07 71.98 0.65 -0.55 16 14 C -0.14 -2.14 9.20 71.98 0.66 -1.48 16 15 C -0.12 -2.67 6.55 31.12 0.20 -2.47 16 16 C 0.16 4.73 2.74 44.97 0.12 4.85 16 17 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 18 C -0.09 -3.80 2.75 30.59 0.08 -3.72 16 19 C 0.16 7.38 5.67 86.38 0.49 7.87 16 20 N -0.76 -45.00 5.60 -343.44 -1.92 -46.93 16 21 C -0.34 -21.22 9.99 84.03 0.84 -20.38 16 22 H 0.07 4.12 7.83 -2.91 -0.02 4.09 16 23 C -0.11 -6.93 5.50 84.86 0.47 -6.46 16 24 N -0.97 -66.67 13.70 21.65 0.30 -66.38 16 25 Si 1.14 55.39 29.92 68.60 2.05 57.44 16 26 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 27 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 28 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 29 H 0.06 1.48 5.97 -2.39 -0.01 1.47 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.02 0.83 6.12 -2.39 -0.01 0.81 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.85 6.34 -2.39 -0.02 0.84 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.11 0.89 5.42 -2.38 -0.01 0.88 16 38 H 0.14 1.79 7.06 -2.38 -0.02 1.77 16 39 H 0.07 1.26 7.93 -2.39 -0.02 1.24 16 40 H 0.11 0.89 7.89 -2.39 -0.02 0.87 16 41 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.07 0.52 7.34 -2.39 -0.02 0.50 16 44 H 0.04 0.77 7.96 -2.39 -0.02 0.75 16 45 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.07 1.49 8.10 -2.39 -0.02 1.47 16 48 H 0.06 1.76 7.41 -2.39 -0.02 1.74 16 49 H 0.05 2.24 5.51 -2.39 -0.01 2.23 16 50 H 0.06 2.72 6.27 -2.39 -0.01 2.70 16 51 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 52 H 0.02 1.03 6.57 -2.39 -0.02 1.01 16 53 H 0.36 22.45 6.50 -92.71 -0.60 21.84 16 54 H 0.24 16.74 6.77 -92.71 -0.63 16.12 16 Total: -1.00 -83.09 394.19 4.57 -78.52 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: 0.41 Total: 35.84 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 5.68 Total: -18.89 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -3.54 Total: -129.48 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.03 Total: -23.44 kcal Atomic # 14 Polarization: 55.39 SS G_CDS: 2.05 Total: 57.44 kcal Total: -83.09 4.57 -78.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691991638.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.342 kcal (2) G-P(sol) polarization free energy of solvation -83.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds