Wall clock time and date at job start Tue Mar 31 2020 15:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.01808 * 2 1 4 4 C 1.54269 * 110.07210 * 238.58561 * 2 1 3 5 5 C 1.54896 * 104.19525 * 217.08668 * 4 2 1 6 6 C 1.54885 * 102.74987 * 37.93847 * 5 4 2 7 7 H 1.09004 * 110.60082 * 80.79585 * 6 5 4 8 8 C 1.53003 * 110.48842 * 203.38277 * 6 5 4 9 9 C 1.50701 * 109.46877 * 289.77759 * 8 6 5 10 10 O 1.21279 * 119.99903 * 359.97438 * 9 8 6 11 11 N 1.34770 * 119.99963 * 180.02562 * 9 8 6 12 12 C 1.46926 * 120.63144 * 359.71519 * 11 9 8 13 13 C 1.52758 * 109.01245 * 233.58734 * 12 11 9 14 14 C 1.53047 * 109.38167 * 305.58685 * 13 12 11 15 15 C 1.53001 * 109.45914 * 181.25742 * 14 13 12 16 16 N 1.46497 * 109.47008 * 64.93494 * 15 14 13 17 17 C 1.46497 * 119.99971 * 269.99985 * 16 15 14 18 18 C 1.36940 * 120.00040 * 89.99791 * 16 15 14 19 19 H 1.07998 * 119.99653 * 21.68685 * 18 16 15 20 20 C 1.38812 * 120.00070 * 201.68742 * 18 16 15 21 21 N 1.31627 * 119.99580 * 11.57844 * 20 18 16 22 22 Si 1.86793 * 120.00094 * 191.57811 * 20 18 16 23 23 H 1.48505 * 109.47102 * 90.00104 * 22 20 18 24 24 H 1.48495 * 109.47380 * 209.99847 * 22 20 18 25 25 H 1.48498 * 109.47157 * 330.00023 * 22 20 18 26 26 C 1.53042 * 109.53643 * 61.23998 * 14 13 12 27 27 C 1.46932 * 120.63367 * 179.97438 * 11 9 8 28 28 C 1.53879 * 110.03354 * 121.39591 * 2 1 3 29 29 H 1.09001 * 109.46650 * 299.29494 * 1 2 3 30 30 H 1.08999 * 109.46906 * 59.29869 * 1 2 3 31 31 H 1.09000 * 109.47184 * 179.30069 * 1 2 3 32 32 H 1.08999 * 110.48558 * 335.75938 * 4 2 1 33 33 H 1.08996 * 110.48899 * 98.40843 * 4 2 1 34 34 H 1.09004 * 110.74877 * 279.62542 * 5 4 2 35 35 H 1.08997 * 110.91505 * 156.32850 * 5 4 2 36 36 H 1.08997 * 109.47011 * 49.77166 * 8 6 5 37 37 H 1.09003 * 109.47116 * 169.77921 * 8 6 5 38 38 H 1.08996 * 109.58904 * 353.42198 * 12 11 9 39 39 H 1.09008 * 109.58515 * 113.84462 * 12 11 9 40 40 H 1.08991 * 109.56839 * 185.55585 * 13 12 11 41 41 H 1.08998 * 109.36065 * 65.49182 * 13 12 11 42 42 H 1.08999 * 109.45950 * 301.21979 * 14 13 12 43 43 H 1.09001 * 109.46672 * 184.93111 * 15 14 13 44 44 H 1.09005 * 109.47108 * 304.93159 * 15 14 13 45 45 H 1.08999 * 109.47397 * 95.29622 * 17 16 15 46 46 H 1.09006 * 109.47065 * 215.30147 * 17 16 15 47 47 H 1.09004 * 109.47137 * 335.29858 * 17 16 15 48 48 H 0.97000 * 119.98861 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.49608 * 178.68028 * 26 14 13 50 50 H 1.09000 * 109.52339 * 58.59869 * 26 14 13 51 51 H 1.08997 * 109.58292 * 246.15782 * 27 11 9 52 52 H 1.09000 * 109.57999 * 6.57568 * 27 11 9 53 53 H 1.08996 * 110.02953 * 238.62081 * 28 2 1 54 54 H 1.08997 * 110.02790 * 0.04647 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0595 -0.7552 -1.2366 5 6 3.3150 -1.4997 -0.7182 6 6 2.8885 -1.9397 0.7043 7 1 2.2794 -2.8426 0.6600 8 6 4.1183 -2.1677 1.5856 9 6 4.8459 -3.4035 1.1225 10 8 4.4224 -4.0395 0.1808 11 7 5.9668 -3.8024 1.7557 12 6 6.4950 -3.0395 2.8948 13 6 7.9595 -2.6968 2.6280 14 6 8.7332 -3.9804 2.3178 15 6 10.2066 -3.6428 2.0812 16 7 10.7937 -3.1243 3.3191 17 6 10.7627 -1.6865 3.5983 18 6 11.3715 -3.9835 4.2153 19 1 11.7128 -4.9548 3.8890 20 6 11.5183 -3.6061 5.5430 21 7 10.9065 -2.5311 5.9931 22 14 12.5841 -4.6238 6.6909 23 1 13.9791 -4.1163 6.6512 24 1 12.0589 -4.5200 8.0761 25 1 12.5615 -6.0441 6.2581 26 6 8.1527 -4.6373 1.0633 27 6 6.6870 -5.0054 1.3163 28 6 2.0572 -0.7531 1.2340 29 1 -0.3633 0.5029 0.8963 30 1 -0.3633 0.5247 -0.8836 31 1 -0.3633 -1.0276 -0.0125 32 1 1.3159 -1.4663 -1.5966 33 1 2.3306 -0.0533 -2.0251 34 1 4.1718 -0.8274 -0.6740 35 1 3.5378 -2.3667 -1.3402 36 1 4.7823 -1.3064 1.5126 37 1 3.8041 -2.2976 2.6212 38 1 5.9223 -2.1201 3.0160 39 1 6.4224 -3.6398 3.8018 40 1 8.3884 -2.2173 3.5079 41 1 8.0228 -2.0192 1.7766 42 1 8.6489 -4.6676 3.1597 43 1 10.7406 -4.5423 1.7747 44 1 10.2854 -2.8888 1.2979 45 1 9.8999 -1.4562 4.2233 46 1 11.6759 -1.3977 4.1188 47 1 10.6894 -1.1357 2.6605 48 1 11.0095 -2.2672 6.9208 49 1 8.7191 -5.5388 0.8296 50 1 8.2141 -3.9417 0.2263 51 1 6.6303 -5.7689 2.0921 52 1 6.2407 -5.3827 0.3962 53 1 2.6860 -0.0944 1.8329 54 1 1.2229 -1.1193 1.8324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692020729.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:02 Heat of formation + Delta-G solvation = -58.480517 kcal Electronic energy + Delta-G solvation = -28495.535464 eV Core-core repulsion = 24851.864065 eV Total energy + Delta-G solvation = -3643.671399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.35303 -39.60292 -38.66710 -37.06857 -34.52773 -33.64351 -32.56041 -31.88582 -30.51036 -28.87865 -27.94211 -27.58980 -25.39961 -24.69898 -23.97113 -22.53852 -21.60484 -21.01829 -20.25873 -19.80011 -18.65638 -18.05524 -17.14458 -16.80169 -16.54197 -16.02820 -15.84886 -15.61465 -15.53419 -15.20856 -14.85933 -14.66040 -14.40122 -14.27227 -14.01266 -13.92940 -13.80288 -13.55628 -13.17982 -13.06603 -12.97371 -12.75159 -12.64139 -12.48780 -12.33452 -12.16881 -12.02176 -11.91134 -11.88991 -11.70623 -11.61704 -11.58681 -11.52865 -11.45076 -11.23580 -11.20662 -11.13843 -10.64613 -10.56204 -9.62209 -8.69518 -7.77306 -5.22665 1.47487 1.49149 1.56559 1.67551 2.06746 2.54135 3.35855 3.49281 3.68034 3.71678 3.78491 3.87147 3.90636 4.08575 4.19072 4.21819 4.24555 4.34477 4.39795 4.47770 4.60145 4.61397 4.61803 4.64261 4.73631 4.78720 4.81012 4.83016 4.85282 4.89349 4.91074 4.93481 5.05007 5.06388 5.10950 5.12761 5.16953 5.18791 5.20663 5.25712 5.36600 5.40090 5.41642 5.42174 5.56910 5.61030 5.63235 5.67340 5.71498 5.87021 6.38974 6.48028 7.21741 7.22154 7.95054 8.37697 9.25461 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022475 B = 0.002474 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.502081 B =11312.972387 C =11785.217430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.076 0.924 4 C -0.118 4.118 5 C -0.118 4.118 6 C -0.073 4.073 7 H 0.062 0.938 8 C -0.130 4.130 9 C 0.510 3.490 10 O -0.581 6.581 11 N -0.609 5.609 12 C 0.115 3.885 13 C -0.117 4.117 14 C -0.096 4.096 15 C 0.155 3.845 16 N -0.616 5.616 17 C 0.180 3.820 18 C -0.254 4.254 19 H 0.066 0.934 20 C -0.051 4.051 21 N -0.934 5.934 22 Si 0.961 3.039 23 H -0.290 1.290 24 H -0.296 1.296 25 H -0.272 1.272 26 C -0.115 4.115 27 C 0.114 3.886 28 C -0.114 4.114 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.041 0.959 44 H 0.050 0.950 45 H 0.017 0.983 46 H 0.009 0.991 47 H 0.023 0.977 48 H 0.246 0.754 49 H 0.079 0.921 50 H 0.063 0.937 51 H 0.065 0.935 52 H 0.082 0.918 53 H 0.076 0.924 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.103 4.666 -10.826 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.095 0.905 4 C -0.156 4.156 5 C -0.155 4.155 6 C -0.092 4.092 7 H 0.081 0.919 8 C -0.170 4.170 9 C 0.301 3.699 10 O -0.461 6.461 11 N -0.342 5.342 12 C -0.008 4.008 13 C -0.155 4.155 14 C -0.117 4.117 15 C 0.029 3.971 16 N -0.339 5.339 17 C 0.035 3.965 18 C -0.385 4.385 19 H 0.084 0.916 20 C -0.246 4.246 21 N -0.581 5.581 22 Si 0.790 3.210 23 H -0.217 1.217 24 H -0.223 1.223 25 H -0.197 1.197 26 C -0.153 4.153 27 C -0.009 4.009 28 C -0.151 4.151 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.035 0.965 46 H 0.028 0.972 47 H 0.041 0.959 48 H 0.055 0.945 49 H 0.098 0.902 50 H 0.082 0.918 51 H 0.083 0.917 52 H 0.100 0.900 53 H 0.094 0.906 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.304 4.406 -11.160 21.886 hybrid contribution 0.972 -0.698 1.023 1.574 sum -17.332 3.708 -10.137 20.418 Atomic orbital electron populations 1.21876 0.94552 1.01638 1.01999 1.21747 0.96073 0.99419 0.94267 0.90535 1.22433 0.96777 0.98760 0.97626 1.22502 0.97862 0.99108 0.96055 1.21688 0.94621 0.98439 0.94414 0.91935 1.21855 0.97625 0.95346 1.02128 1.21257 0.80087 0.86830 0.81761 1.90631 1.67399 1.58158 1.29960 1.48292 1.25563 1.27491 1.32856 1.21715 0.94834 0.96691 0.87533 1.21759 0.94229 0.97629 1.01919 1.21607 0.96785 0.96616 0.96739 1.20999 0.91506 0.97113 0.87482 1.44136 1.66613 1.03020 1.20131 1.20601 0.98669 0.82630 0.94596 1.19464 1.31078 0.98782 0.89144 0.91647 1.25634 1.01488 0.99447 0.98050 1.70199 1.45741 1.27654 1.14533 0.85356 0.78506 0.78844 0.78265 1.21728 1.22260 1.19721 1.21833 0.94650 1.01252 0.97603 1.21548 0.91990 0.86834 1.00533 1.22301 0.99291 0.95984 0.97544 0.92096 0.92431 0.93075 0.92057 0.91348 0.91822 0.93178 0.87356 0.87219 0.87515 0.91979 0.91501 0.92068 0.93761 0.94015 0.93162 0.96456 0.97214 0.95865 0.94483 0.90202 0.91805 0.91707 0.89969 0.90573 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.85 71.98 0.64 -1.10 16 2 C -0.10 -1.34 3.50 -10.07 -0.04 -1.37 16 3 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.12 -1.93 6.36 31.67 0.20 -1.73 16 5 C -0.12 -2.38 5.76 31.89 0.18 -2.19 16 6 C -0.07 -1.38 2.45 -9.72 -0.02 -1.40 16 7 H 0.06 1.42 7.90 -2.38 -0.02 1.40 16 8 C -0.13 -2.45 3.40 29.85 0.10 -2.35 16 9 C 0.51 13.48 7.51 87.66 0.66 14.14 16 10 O -0.58 -19.06 14.14 -3.03 -0.04 -19.10 16 11 N -0.61 -16.05 2.98 -819.66 -2.44 -18.49 16 12 C 0.11 2.92 6.31 86.22 0.54 3.46 16 13 C -0.12 -3.64 4.95 30.53 0.15 -3.49 16 14 C -0.10 -3.23 2.36 -10.76 -0.03 -3.26 16 15 C 0.15 5.92 5.18 86.38 0.45 6.37 16 16 N -0.62 -29.49 2.75 -726.93 -2.00 -31.49 16 17 C 0.18 8.48 7.84 127.77 1.00 9.48 16 18 C -0.25 -13.56 9.68 84.03 0.81 -12.75 16 19 H 0.07 3.44 7.84 -2.91 -0.02 3.42 16 20 C -0.05 -2.80 5.13 84.86 0.44 -2.36 16 21 N -0.93 -53.21 10.55 21.65 0.23 -52.98 16 22 Si 0.96 44.51 29.57 68.60 2.03 46.54 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 24 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 C -0.11 -3.13 5.36 30.69 0.16 -2.97 16 27 C 0.11 3.07 6.44 86.37 0.56 3.63 16 28 C -0.11 -1.63 6.03 31.32 0.19 -1.44 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.66 8.13 -2.39 -0.02 0.64 16 32 H 0.06 1.04 7.85 -2.39 -0.02 1.02 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 1.24 7.97 -2.39 -0.02 1.22 16 35 H 0.05 1.27 7.28 -2.39 -0.02 1.25 16 36 H 0.11 1.76 7.56 -2.39 -0.02 1.74 16 37 H 0.11 1.69 7.95 -2.39 -0.02 1.67 16 38 H 0.11 2.11 5.94 -2.39 -0.01 2.10 16 39 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.07 2.54 5.45 -2.39 -0.01 2.53 16 41 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.04 1.59 8.03 -2.39 -0.02 1.57 16 44 H 0.05 1.76 7.86 -2.38 -0.02 1.74 16 45 H 0.02 0.87 5.87 -2.39 -0.01 0.85 16 46 H 0.01 0.48 7.22 -2.38 -0.02 0.47 16 47 H 0.02 0.93 7.83 -2.38 -0.02 0.91 16 48 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 49 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 51 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 52 H 0.08 2.31 7.00 -2.39 -0.02 2.29 16 53 H 0.08 0.95 7.84 -2.39 -0.02 0.93 16 54 H 0.07 0.95 7.67 -2.39 -0.02 0.93 16 Total: -1.00 -63.21 401.34 4.61 -58.60 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.83 Total: 16.25 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 6.00 Total: 0.67 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -4.21 Total: -102.96 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.04 Total: -19.10 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -63.21 4.61 -58.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692020729.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.119 kcal (2) G-P(sol) polarization free energy of solvation -63.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds