Wall clock time and date at job start Tue Mar 31 2020 15:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.43555 * 2 1 4 4 C 1.54893 * 110.48654 * 122.54579 * 2 1 3 5 5 C 1.54883 * 102.75142 * 156.62236 * 4 2 1 6 6 C 1.54272 * 104.19428 * 322.05667 * 5 4 2 7 7 H 1.08999 * 110.03070 * 264.27990 * 6 5 4 8 8 C 1.52999 * 110.03507 * 142.89634 * 6 5 4 9 9 C 1.50698 * 109.47288 * 67.08909 * 8 6 5 10 10 O 1.21283 * 119.99848 * 0.02562 * 9 8 6 11 11 N 1.34776 * 120.00419 * 180.02562 * 9 8 6 12 12 C 1.46925 * 120.63363 * 180.02562 * 11 9 8 13 13 C 1.53188 * 108.77264 * 233.58465 * 12 11 9 14 14 C 1.53042 * 109.31300 * 305.36251 * 13 12 11 15 15 C 1.53002 * 109.46125 * 181.38818 * 14 13 12 16 16 N 1.46493 * 109.47168 * 175.00280 * 15 14 13 17 17 C 1.46501 * 119.99871 * 269.99790 * 16 15 14 18 18 C 1.36939 * 120.00513 * 90.00229 * 16 15 14 19 19 H 1.08002 * 119.99367 * 341.99744 * 18 16 15 20 20 C 1.38805 * 120.00375 * 162.27839 * 18 16 15 21 21 N 1.31619 * 120.00157 * 345.63867 * 20 18 16 22 22 Si 1.86803 * 120.00167 * 165.64160 * 20 18 16 23 23 H 1.48504 * 109.46970 * 59.99803 * 22 20 18 24 24 H 1.48502 * 109.47160 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47096 * 299.99938 * 22 20 18 26 26 C 1.53045 * 109.53672 * 61.36889 * 14 13 12 27 27 C 1.46935 * 120.62670 * 359.97438 * 11 9 8 28 28 C 1.53876 * 106.63998 * 23.58191 * 6 5 4 29 29 H 1.08993 * 109.47013 * 298.90990 * 1 2 3 30 30 H 1.09001 * 109.46823 * 58.91090 * 1 2 3 31 31 H 1.09003 * 109.46892 * 178.90839 * 1 2 3 32 32 H 1.08994 * 110.75915 * 38.30213 * 4 2 1 33 33 H 1.09002 * 110.75392 * 274.93601 * 4 2 1 34 34 H 1.08995 * 110.48699 * 203.37916 * 5 4 2 35 35 H 1.09007 * 110.48944 * 80.73013 * 5 4 2 36 36 H 1.09007 * 109.46831 * 307.09318 * 8 6 5 37 37 H 1.08996 * 109.47092 * 187.09356 * 8 6 5 38 38 H 1.08997 * 109.58415 * 113.79879 * 12 11 9 39 39 H 1.08997 * 109.70089 * 353.44072 * 12 11 9 40 40 H 1.09000 * 109.49663 * 185.41252 * 13 12 11 41 41 H 1.09001 * 109.50086 * 65.31685 * 13 12 11 42 42 H 1.08998 * 109.46335 * 301.35752 * 14 13 12 43 43 H 1.09001 * 109.47210 * 54.99629 * 15 14 13 44 44 H 1.09000 * 109.46861 * 295.00178 * 15 14 13 45 45 H 1.08997 * 109.47191 * 265.15199 * 17 16 15 46 46 H 1.09001 * 109.47053 * 25.15362 * 17 16 15 47 47 H 1.08997 * 109.47120 * 145.15230 * 17 16 15 48 48 H 0.97000 * 120.00604 * 180.02562 * 21 20 18 49 49 H 1.08999 * 109.49940 * 58.58509 * 26 14 13 50 50 H 1.08999 * 109.49283 * 178.68255 * 26 14 13 51 51 H 1.08998 * 109.58269 * 246.20439 * 27 11 9 52 52 H 1.09001 * 109.58634 * 6.62471 * 27 11 9 53 53 H 1.09004 * 110.02908 * 119.31157 * 28 6 5 54 54 H 1.08993 * 110.03641 * 240.74121 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0722 -0.7806 1.2231 5 6 3.4907 -1.1971 0.7615 6 6 3.3166 -1.5414 -0.7322 7 1 3.1701 -2.6147 -0.8533 8 6 4.5466 -1.0884 -1.5214 9 6 5.7388 -1.9139 -1.1111 10 8 5.6165 -2.7796 -0.2706 11 7 6.9408 -1.6901 -1.6781 12 6 8.1121 -2.4870 -1.2890 13 6 9.2410 -1.5362 -0.8787 14 6 9.5048 -0.5441 -2.0137 15 6 10.6551 0.3853 -1.6214 16 7 10.9869 1.2558 -2.7519 17 6 11.9887 0.8321 -3.7333 18 6 10.3608 2.4656 -2.8914 19 1 9.4389 2.6605 -2.3635 20 6 10.9077 3.4393 -3.7158 21 7 12.1492 3.3234 -4.1371 22 14 9.8817 4.9141 -4.2273 23 1 9.4569 5.6648 -3.0184 24 1 10.6910 5.8010 -5.1012 25 1 8.6817 4.4493 -4.9684 26 6 8.2446 0.2852 -2.2717 27 6 7.1044 -0.6452 -2.6982 28 6 2.0697 -0.7813 -1.2172 29 1 -0.3633 0.4968 0.8995 30 1 -0.3633 0.5307 -0.8801 31 1 -0.3633 -1.0275 -0.0196 32 1 1.4581 -1.6584 1.4243 33 1 2.1252 -0.1357 2.1003 34 1 3.8316 -2.0706 1.3171 35 1 4.1898 -0.3696 0.8832 36 1 4.7442 -0.0366 -1.3140 37 1 4.3629 -1.2202 -2.5876 38 1 8.4361 -3.0964 -2.1326 39 1 7.8548 -3.1326 -0.4493 40 1 10.1459 -2.1104 -0.6797 41 1 8.9500 -0.9921 0.0199 42 1 9.7716 -1.0900 -2.9186 43 1 11.5278 -0.2101 -1.3528 44 1 10.3551 0.9950 -0.7691 45 1 12.9601 1.2457 -3.4626 46 1 12.0478 -0.2563 -3.7455 47 1 11.7035 1.1916 -4.7220 48 1 12.5316 4.0039 -4.7129 49 1 7.9629 0.8122 -1.3600 50 1 8.4405 1.0075 -3.0642 51 1 7.3463 -1.1048 -3.6564 52 1 6.1804 -0.0739 -2.7875 53 1 2.3409 -0.0896 -2.0148 54 1 1.3178 -1.4857 -1.5728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692020731.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:11 Heat of formation + Delta-G solvation = -57.890368 kcal Electronic energy + Delta-G solvation = -28549.929857 eV Core-core repulsion = 24906.284049 eV Total energy + Delta-G solvation = -3643.645808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.35722 -39.60632 -38.64619 -37.06919 -34.53136 -33.62145 -32.54150 -31.90137 -30.51552 -28.77616 -27.95173 -27.64499 -25.38529 -24.64545 -24.02766 -22.60338 -21.48293 -21.04441 -20.30005 -19.79127 -18.62204 -18.07506 -17.14763 -16.85740 -16.56092 -16.02465 -15.76701 -15.64197 -15.33237 -15.08272 -14.92596 -14.58546 -14.47212 -14.35738 -14.03644 -13.84621 -13.72620 -13.66449 -13.21400 -13.13488 -12.94798 -12.68726 -12.59557 -12.56957 -12.17988 -12.16041 -12.00116 -11.96641 -11.89537 -11.83101 -11.66005 -11.60650 -11.51968 -11.42137 -11.26097 -11.20234 -11.10882 -10.62133 -10.53462 -9.59534 -8.73197 -7.75458 -5.18204 1.50470 1.51767 1.58099 1.68262 2.08902 2.56419 3.37228 3.51113 3.66982 3.70257 3.75631 3.86501 3.92052 4.06912 4.20150 4.22190 4.24268 4.32978 4.41545 4.49327 4.57996 4.60725 4.62682 4.67119 4.75071 4.78173 4.79586 4.82193 4.84639 4.89443 4.90688 4.96765 5.02408 5.08213 5.12352 5.13584 5.13648 5.19110 5.22079 5.23305 5.37629 5.39637 5.41938 5.48123 5.57686 5.60435 5.64456 5.67562 5.73146 5.79012 6.37818 6.48537 7.22043 7.22850 7.96040 8.39028 9.28765 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.002987 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.688667 B = 9371.239270 C =10916.321455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.119 4.119 5 C -0.113 4.113 6 C -0.072 4.072 7 H 0.062 0.938 8 C -0.131 4.131 9 C 0.509 3.491 10 O -0.581 6.581 11 N -0.611 5.611 12 C 0.115 3.885 13 C -0.116 4.116 14 C -0.093 4.093 15 C 0.155 3.845 16 N -0.618 5.618 17 C 0.181 3.819 18 C -0.242 4.242 19 H 0.080 0.920 20 C -0.063 4.063 21 N -0.946 5.946 22 Si 0.962 3.038 23 H -0.279 1.279 24 H -0.302 1.302 25 H -0.273 1.273 26 C -0.119 4.119 27 C 0.112 3.888 28 C -0.113 4.113 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.042 0.958 44 H 0.036 0.964 45 H -0.005 1.005 46 H 0.026 0.974 47 H 0.021 0.979 48 H 0.244 0.756 49 H 0.049 0.951 50 H 0.074 0.926 51 H 0.075 0.925 52 H 0.103 0.897 53 H 0.076 0.924 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.089 -10.128 5.219 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.092 0.908 4 C -0.157 4.157 5 C -0.151 4.151 6 C -0.091 4.091 7 H 0.081 0.919 8 C -0.170 4.170 9 C 0.299 3.701 10 O -0.462 6.462 11 N -0.343 5.343 12 C -0.008 4.008 13 C -0.155 4.155 14 C -0.114 4.114 15 C 0.029 3.971 16 N -0.341 5.341 17 C 0.036 3.964 18 C -0.372 4.372 19 H 0.097 0.903 20 C -0.257 4.257 21 N -0.594 5.594 22 Si 0.791 3.209 23 H -0.205 1.205 24 H -0.228 1.228 25 H -0.199 1.199 26 C -0.157 4.157 27 C -0.010 4.010 28 C -0.150 4.150 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.122 0.878 37 H 0.131 0.869 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.014 0.986 46 H 0.044 0.956 47 H 0.040 0.960 48 H 0.053 0.947 49 H 0.068 0.932 50 H 0.093 0.907 51 H 0.093 0.907 52 H 0.121 0.879 53 H 0.095 0.905 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.047 -10.475 5.548 23.289 hybrid contribution 0.443 0.993 -0.348 1.141 sum -19.604 -9.482 5.200 22.390 Atomic orbital electron populations 1.21788 0.94259 1.01920 1.01969 1.21998 0.96048 0.99088 0.94473 0.90825 1.22584 0.95441 0.99811 0.97853 1.22319 0.97086 1.00000 0.95682 1.21481 0.93354 0.99811 0.94500 0.91912 1.21947 0.91739 1.00413 1.02931 1.21254 0.84793 0.83700 0.80342 1.90636 1.85247 1.35904 1.34392 1.48312 1.08703 1.36414 1.40903 1.21536 0.84942 0.93447 1.00840 1.21827 0.98432 0.97287 0.97958 1.21580 0.95978 0.95946 0.97895 1.20913 0.95376 0.91814 0.89038 1.44174 1.46409 1.17600 1.25948 1.20497 0.90972 0.92909 0.92072 1.19524 1.02865 0.90727 1.24088 0.90262 1.25677 0.96629 1.00625 1.02735 1.70273 1.13541 1.36055 1.39556 0.85411 0.78151 0.79510 0.77870 1.20479 1.22835 1.19918 1.21863 0.94213 0.97894 1.01740 1.21897 1.00144 0.88580 0.90365 1.22314 0.95889 0.98886 0.97935 0.92519 0.92150 0.92579 0.91476 0.91580 0.93246 0.92871 0.87778 0.86944 0.90839 0.90273 0.89824 0.92670 0.92203 0.93916 0.94581 0.98629 0.95591 0.95998 0.94670 0.93188 0.90732 0.90699 0.87872 0.90512 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.13 71.98 0.66 -1.01 16 2 C -0.10 -1.38 3.46 -9.68 -0.03 -1.42 16 3 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.12 -1.97 6.33 31.88 0.20 -1.77 16 5 C -0.11 -2.36 5.39 31.67 0.17 -2.19 16 6 C -0.07 -1.35 2.55 -10.07 -0.03 -1.38 16 7 H 0.06 1.36 7.95 -2.39 -0.02 1.34 16 8 C -0.13 -2.40 3.18 29.85 0.09 -2.30 16 9 C 0.51 12.96 7.48 87.66 0.66 13.62 16 10 O -0.58 -18.62 14.20 -3.04 -0.04 -18.67 16 11 N -0.61 -14.97 2.97 -818.84 -2.43 -17.40 16 12 C 0.11 2.82 6.43 86.36 0.56 3.38 16 13 C -0.12 -2.97 5.36 30.67 0.16 -2.81 16 14 C -0.09 -2.85 2.36 -10.76 -0.03 -2.87 16 15 C 0.15 5.89 5.15 86.38 0.44 6.34 16 16 N -0.62 -29.50 2.81 -726.96 -2.04 -31.54 16 17 C 0.18 8.77 8.97 127.77 1.15 9.92 16 18 C -0.24 -12.50 8.09 84.03 0.68 -11.82 16 19 H 0.08 3.90 6.91 -2.91 -0.02 3.88 16 20 C -0.06 -3.43 5.09 84.86 0.43 -2.99 16 21 N -0.95 -55.46 10.48 21.65 0.23 -55.23 16 22 Si 0.96 43.71 29.58 68.60 2.03 45.74 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 26 C -0.12 -3.54 4.64 30.69 0.14 -3.39 16 27 C 0.11 2.56 6.34 86.37 0.55 3.11 16 28 C -0.11 -1.59 6.03 31.36 0.19 -1.40 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.64 8.11 -2.39 -0.02 0.62 16 32 H 0.07 1.08 8.06 -2.39 -0.02 1.06 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 1.25 7.63 -2.39 -0.02 1.23 16 35 H 0.05 1.17 7.77 -2.38 -0.02 1.15 16 36 H 0.10 1.74 7.57 -2.38 -0.02 1.72 16 37 H 0.11 1.59 7.94 -2.39 -0.02 1.57 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.08 2.09 7.01 -2.39 -0.02 2.08 16 40 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.04 1.55 8.07 -2.39 -0.02 1.53 16 44 H 0.04 1.42 8.04 -2.39 -0.02 1.40 16 45 H 0.00 -0.25 7.49 -2.39 -0.02 -0.27 16 46 H 0.03 1.06 8.04 -2.39 -0.02 1.05 16 47 H 0.02 1.14 6.99 -2.39 -0.02 1.12 16 48 H 0.24 14.07 8.31 -92.71 -0.77 13.30 16 49 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.07 2.67 6.02 -2.39 -0.01 2.65 16 51 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 52 H 0.10 1.87 5.93 -2.39 -0.01 1.85 16 53 H 0.08 0.93 7.67 -2.38 -0.02 0.92 16 54 H 0.07 0.94 7.82 -2.39 -0.02 0.92 16 Total: -1.00 -64.28 402.08 4.57 -59.71 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.83 Total: 16.39 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 6.00 Total: 1.00 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -4.25 Total: -104.17 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.04 Total: -18.67 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -64.28 4.57 -59.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692020731.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.821 kcal (2) G-P(sol) polarization free energy of solvation -64.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds