Wall clock time and date at job start Tue Mar 31 2020 15:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.81617 * 2 1 4 4 C 1.54892 * 110.75814 * 236.66202 * 2 1 3 5 5 C 1.54260 * 104.19952 * 203.73992 * 4 2 1 6 6 C 1.53874 * 106.59717 * 23.61420 * 5 4 2 7 7 H 1.09004 * 110.03229 * 240.66604 * 6 5 4 8 8 C 1.53003 * 110.03610 * 119.28410 * 6 5 4 9 9 C 1.50701 * 109.47176 * 67.08681 * 8 6 5 10 10 O 1.21282 * 119.99926 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99710 * 179.97438 * 9 8 6 12 12 C 1.46929 * 120.62703 * 180.02562 * 11 9 8 13 13 C 1.53191 * 108.77344 * 233.59053 * 12 11 9 14 14 C 1.53041 * 109.31582 * 305.36588 * 13 12 11 15 15 C 1.52999 * 109.46160 * 181.38482 * 14 13 12 16 16 N 1.46500 * 109.47065 * 174.97175 * 15 14 13 17 17 C 1.46503 * 119.99871 * 270.00339 * 16 15 14 18 18 C 1.36935 * 120.00018 * 89.99960 * 16 15 14 19 19 H 1.08001 * 119.99694 * 340.76474 * 18 16 15 20 20 C 1.38813 * 119.99946 * 160.48080 * 18 16 15 21 21 N 1.31624 * 119.99782 * 347.58153 * 20 18 16 22 22 Si 1.86798 * 119.99971 * 167.57760 * 20 18 16 23 23 H 1.48499 * 109.46977 * 90.00130 * 22 20 18 24 24 H 1.48497 * 109.47009 * 210.00241 * 22 20 18 25 25 H 1.48498 * 109.46906 * 330.00135 * 22 20 18 26 26 C 1.53036 * 109.52398 * 61.37181 * 14 13 12 27 27 C 1.46925 * 120.63356 * 359.97438 * 11 9 8 28 28 C 1.54270 * 106.63968 * 359.97313 * 6 5 4 29 29 H 1.09006 * 109.46985 * 181.88398 * 1 2 3 30 30 H 1.08999 * 109.47034 * 301.88260 * 1 2 3 31 31 H 1.08997 * 109.47387 * 61.88321 * 1 2 3 32 32 H 1.09006 * 110.48218 * 85.06437 * 4 2 1 33 33 H 1.09001 * 110.48575 * 322.42562 * 4 2 1 34 34 H 1.08995 * 110.03596 * 264.32932 * 5 4 2 35 35 H 1.09007 * 110.07090 * 142.91627 * 5 4 2 36 36 H 1.08998 * 109.46669 * 307.09180 * 8 6 5 37 37 H 1.08992 * 109.47166 * 187.09193 * 8 6 5 38 38 H 1.08997 * 109.58676 * 113.80748 * 12 11 9 39 39 H 1.09000 * 109.70249 * 353.44595 * 12 11 9 40 40 H 1.09001 * 109.49836 * 185.41328 * 13 12 11 41 41 H 1.09001 * 109.49938 * 65.32290 * 13 12 11 42 42 H 1.08995 * 109.45680 * 301.35926 * 14 13 12 43 43 H 1.09007 * 109.46998 * 54.97563 * 15 14 13 44 44 H 1.08994 * 109.47627 * 294.97611 * 15 14 13 45 45 H 1.08999 * 109.46833 * 264.87360 * 17 16 15 46 46 H 1.08999 * 109.47449 * 24.87370 * 17 16 15 47 47 H 1.09004 * 109.46759 * 144.87289 * 17 16 15 48 48 H 0.97004 * 119.99688 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.50359 * 58.58359 * 26 14 13 50 50 H 1.09004 * 109.49860 * 178.67745 * 26 14 13 51 51 H 1.08995 * 109.58428 * 246.19788 * 27 11 9 52 52 H 1.08994 * 109.58516 * 6.62344 * 27 11 9 53 53 H 1.08998 * 110.48782 * 95.09677 * 28 6 5 54 54 H 1.09001 * 110.48494 * 217.73731 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9173 1.0188 0.0000 4 6 2.0789 -0.7960 -1.2100 5 6 3.4931 -1.2268 -0.7694 6 6 3.4931 -1.2268 0.7693 7 1 4.2332 -0.5190 1.1427 8 6 3.8004 -2.6310 1.2935 9 6 5.2202 -2.9975 0.9459 10 8 5.9178 -2.2126 0.3391 11 7 5.7150 -4.1970 1.3102 12 6 7.0975 -4.5684 0.9790 13 6 7.0843 -5.9119 0.2432 14 6 6.3416 -6.9466 1.0917 15 6 6.3563 -8.2985 0.3755 16 7 5.7517 -9.3154 1.2395 17 6 6.5880 -10.0762 2.1713 18 6 4.4050 -9.5549 1.1763 19 1 3.7452 -8.8174 0.7436 20 6 3.8885 -10.7479 1.6629 21 7 4.6974 -11.7436 1.9574 22 14 2.0456 -10.9402 1.8998 23 1 1.4394 -11.4740 0.6537 24 1 1.7860 -11.8810 3.0191 25 1 1.4466 -9.6185 2.2150 26 6 4.8941 -6.4947 1.2982 27 6 4.8827 -5.1577 2.0471 28 6 2.0794 -0.7955 1.2111 29 1 -0.3633 -1.0272 0.0338 30 1 -0.3633 0.5428 0.8726 31 1 -0.3634 0.4843 -0.9063 32 1 2.1320 -0.1592 -2.0931 33 1 1.4574 -1.6698 -1.4055 34 1 4.2325 -0.5184 -1.1428 35 1 3.7128 -2.2271 -1.1428 36 1 3.1179 -3.3471 0.8357 37 1 3.6747 -2.6503 2.3760 38 1 7.6809 -4.6594 1.8952 39 1 7.5396 -3.8052 0.3385 40 1 8.1085 -6.2456 0.0766 41 1 6.5783 -5.7967 -0.7154 42 1 6.8336 -7.0430 2.0595 43 1 7.3852 -8.5788 0.1495 44 1 5.7879 -8.2248 -0.5516 45 1 6.8812 -11.0190 1.7095 46 1 7.4795 -9.4981 2.4145 47 1 6.0255 -10.2775 3.0830 48 1 4.3365 -12.5772 2.2978 49 1 4.4089 -6.3740 0.3297 50 1 4.3592 -7.2433 1.8828 51 1 5.2860 -5.2965 3.0501 52 1 3.8612 -4.7829 2.1104 53 1 1.4578 -1.6691 1.4072 54 1 2.1333 -0.1586 2.0940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692020732.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:16 Heat of formation + Delta-G solvation = -58.403610 kcal Electronic energy + Delta-G solvation = -28573.216082 eV Core-core repulsion = 24929.548018 eV Total energy + Delta-G solvation = -3643.668064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.36952 -39.60566 -38.64080 -37.06682 -34.53069 -33.62349 -32.54333 -31.90311 -30.47545 -28.80116 -27.96317 -27.68735 -25.39484 -24.65408 -24.03188 -22.61899 -21.41314 -20.91481 -20.53322 -19.64088 -18.62492 -18.01566 -17.27426 -16.91962 -16.59883 -16.19222 -15.67441 -15.36875 -15.31876 -15.05352 -14.95140 -14.76401 -14.53669 -14.33042 -14.08688 -13.81202 -13.71080 -13.58448 -13.16012 -13.08667 -12.94425 -12.74199 -12.69284 -12.58985 -12.17101 -12.16855 -11.98341 -11.97496 -11.89112 -11.82652 -11.75375 -11.52957 -11.48146 -11.35752 -11.29246 -11.23420 -11.11730 -10.64112 -10.55566 -9.59914 -8.71445 -7.75304 -5.19830 1.49856 1.50776 1.59383 1.67753 2.08533 2.56128 3.37959 3.50051 3.66282 3.70005 3.73180 3.87553 3.92222 4.06579 4.20573 4.22499 4.25170 4.33391 4.41771 4.48559 4.51099 4.60550 4.63523 4.72481 4.74387 4.77760 4.79732 4.83739 4.84823 4.88555 4.89523 4.90825 5.01935 5.08037 5.12003 5.13509 5.16105 5.18127 5.21938 5.22998 5.39063 5.39944 5.43973 5.48272 5.52619 5.61745 5.64493 5.68011 5.73225 5.79170 6.38400 6.48087 7.22220 7.22343 7.95807 8.39273 9.28727 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.003037 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.717490 B = 9217.207959 C =10811.825543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.073 0.927 4 C -0.120 4.120 5 C -0.109 4.109 6 C -0.073 4.073 7 H 0.063 0.937 8 C -0.131 4.131 9 C 0.509 3.491 10 O -0.582 6.582 11 N -0.611 5.611 12 C 0.115 3.885 13 C -0.116 4.116 14 C -0.093 4.093 15 C 0.154 3.846 16 N -0.618 5.618 17 C 0.181 3.819 18 C -0.242 4.242 19 H 0.080 0.920 20 C -0.063 4.063 21 N -0.946 5.946 22 Si 0.962 3.038 23 H -0.291 1.291 24 H -0.299 1.299 25 H -0.263 1.263 26 C -0.119 4.119 27 C 0.112 3.888 28 C -0.111 4.111 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.042 0.958 44 H 0.036 0.964 45 H -0.003 1.003 46 H 0.026 0.974 47 H 0.020 0.980 48 H 0.244 0.756 49 H 0.049 0.951 50 H 0.074 0.926 51 H 0.075 0.925 52 H 0.103 0.897 53 H 0.077 0.923 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.958 22.648 -0.401 22.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 H 0.092 0.908 4 C -0.158 4.158 5 C -0.147 4.147 6 C -0.092 4.092 7 H 0.081 0.919 8 C -0.170 4.170 9 C 0.299 3.701 10 O -0.462 6.462 11 N -0.343 5.343 12 C -0.008 4.008 13 C -0.155 4.155 14 C -0.114 4.114 15 C 0.028 3.972 16 N -0.341 5.341 17 C 0.036 3.964 18 C -0.372 4.372 19 H 0.098 0.902 20 C -0.257 4.257 21 N -0.595 5.595 22 Si 0.791 3.209 23 H -0.218 1.218 24 H -0.226 1.226 25 H -0.187 1.187 26 C -0.157 4.157 27 C -0.010 4.010 28 C -0.149 4.149 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.122 0.878 37 H 0.131 0.869 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.015 0.985 46 H 0.044 0.956 47 H 0.038 0.962 48 H 0.053 0.947 49 H 0.068 0.932 50 H 0.093 0.907 51 H 0.094 0.906 52 H 0.121 0.879 53 H 0.095 0.905 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.620 22.893 -0.652 23.186 hybrid contribution -0.492 -1.020 -0.006 1.133 sum -4.112 21.872 -0.658 22.265 Atomic orbital electron populations 1.21742 0.94116 1.02046 1.01995 1.22100 0.95955 0.98922 0.94487 0.90807 1.22469 0.95394 0.99855 0.98085 1.22045 0.96961 1.00245 0.95413 1.21488 0.97775 0.94650 0.95263 0.91887 1.21910 0.91941 0.98858 1.04284 1.21253 0.90445 0.80583 0.77826 1.90643 1.62033 1.50761 1.42785 1.48312 1.13864 1.15907 1.56239 1.21539 0.82604 0.96464 1.00163 1.21829 1.01337 0.93964 0.98387 1.21577 0.95747 0.94995 0.99064 1.20917 0.95974 0.88099 0.92165 1.44165 1.04927 1.42189 1.42842 1.20495 0.91231 0.92419 0.92291 1.19567 0.83964 0.98875 1.34767 0.90235 1.25726 1.01372 0.95387 1.03186 1.70275 1.34438 1.03698 1.51064 0.85342 0.81111 0.77781 0.76709 1.21839 1.22575 1.18741 1.21868 0.97242 0.96230 1.00374 1.21901 0.95955 0.88193 0.94928 1.22523 0.94119 1.00270 0.97970 0.92557 0.92038 0.92497 0.91749 0.91500 0.93326 0.93780 0.87816 0.86900 0.90802 0.90292 0.89820 0.92699 0.92173 0.93939 0.94599 0.98515 0.95586 0.96150 0.94689 0.93224 0.90718 0.90644 0.87881 0.90453 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.27 71.98 0.67 -0.99 16 2 C -0.10 -1.35 3.49 -9.48 -0.03 -1.38 16 3 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 4 C -0.12 -2.00 6.28 31.67 0.20 -1.80 16 5 C -0.11 -2.29 5.37 31.32 0.17 -2.13 16 6 C -0.07 -1.36 2.55 -10.07 -0.03 -1.39 16 7 H 0.06 1.36 7.95 -2.38 -0.02 1.35 16 8 C -0.13 -2.40 3.19 29.85 0.10 -2.31 16 9 C 0.51 13.00 7.24 87.66 0.63 13.64 16 10 O -0.58 -18.73 14.52 -3.04 -0.04 -18.77 16 11 N -0.61 -14.99 2.97 -818.81 -2.43 -17.42 16 12 C 0.11 2.83 6.43 86.36 0.56 3.38 16 13 C -0.12 -2.98 5.36 30.67 0.16 -2.82 16 14 C -0.09 -2.84 2.36 -10.77 -0.03 -2.87 16 15 C 0.15 5.90 5.15 86.38 0.44 6.34 16 16 N -0.62 -29.51 2.81 -726.92 -2.04 -31.54 16 17 C 0.18 8.78 8.96 127.77 1.15 9.93 16 18 C -0.24 -12.48 8.11 84.03 0.68 -11.80 16 19 H 0.08 3.91 6.84 -2.91 -0.02 3.89 16 20 C -0.06 -3.43 5.12 84.86 0.43 -3.00 16 21 N -0.95 -55.52 10.47 21.65 0.23 -55.29 16 22 Si 0.96 43.72 29.57 68.60 2.03 45.74 16 23 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 26 C -0.12 -3.54 4.63 30.69 0.14 -3.40 16 27 C 0.11 2.56 6.35 86.38 0.55 3.11 16 28 C -0.11 -1.56 5.82 31.70 0.18 -1.37 16 29 H 0.06 0.67 8.12 -2.38 -0.02 0.65 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.07 1.09 8.05 -2.39 -0.02 1.07 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.04 1.06 7.36 -2.38 -0.02 1.04 16 36 H 0.10 1.75 7.69 -2.39 -0.02 1.73 16 37 H 0.11 1.60 7.94 -2.39 -0.02 1.58 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.08 2.10 7.01 -2.39 -0.02 2.08 16 40 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.04 1.54 8.07 -2.38 -0.02 1.53 16 44 H 0.04 1.42 8.04 -2.39 -0.02 1.40 16 45 H 0.00 -0.19 7.43 -2.39 -0.02 -0.21 16 46 H 0.03 1.07 8.03 -2.39 -0.02 1.05 16 47 H 0.02 1.06 7.08 -2.38 -0.02 1.04 16 48 H 0.24 14.03 8.31 -92.71 -0.77 13.26 16 49 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.07 2.67 6.00 -2.38 -0.01 2.66 16 51 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 52 H 0.10 1.87 5.93 -2.39 -0.01 1.86 16 53 H 0.08 0.98 7.74 -2.39 -0.02 0.96 16 54 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -64.50 402.66 4.55 -59.95 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.83 Total: 16.19 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 5.98 Total: 1.15 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -4.25 Total: -104.26 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.04 Total: -18.77 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -64.50 4.55 -59.95 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692020732.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.551 kcal (2) G-P(sol) polarization free energy of solvation -64.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds