Wall clock time and date at job start Tue Mar 31 2020 15:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53785 * 113.61601 * 2 1 4 4 C 1.53781 * 87.08122 * 89.11975 * 3 2 1 5 5 C 1.50690 * 113.61851 * 139.98348 * 4 3 2 6 6 O 1.21285 * 119.99673 * 359.97438 * 5 4 3 7 7 N 1.34779 * 120.00577 * 179.97438 * 5 4 3 8 8 C 1.46931 * 120.62513 * 354.45418 * 7 5 4 9 9 C 1.53193 * 108.77123 * 126.41259 * 8 7 5 10 10 C 1.53040 * 109.31694 * 54.63497 * 9 8 7 11 11 C 1.53044 * 109.53642 * 298.63446 * 10 9 8 12 12 H 1.08994 * 109.49857 * 181.31955 * 11 10 9 13 13 C 1.53004 * 109.49484 * 301.37794 * 11 10 9 14 14 C 1.46927 * 120.63279 * 174.47178 * 7 5 4 15 15 H 1.09003 * 109.58382 * 113.80610 * 14 7 5 16 16 C 1.52999 * 109.58684 * 353.38004 * 14 7 5 17 17 C 1.53000 * 109.47048 * 182.09769 * 16 14 7 18 18 C 1.53001 * 109.47092 * 185.07194 * 17 16 14 19 19 N 1.46500 * 109.46758 * 179.97438 * 18 17 16 20 20 C 1.36938 * 119.99763 * 179.97438 * 19 18 17 21 21 H 1.08009 * 119.99787 * 0.02562 * 20 19 18 22 22 C 1.38813 * 120.00113 * 180.02562 * 20 19 18 23 23 N 1.31614 * 119.99842 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99971 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47062 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46814 * 119.99820 * 24 22 20 27 27 H 1.48490 * 109.47095 * 240.00062 * 24 22 20 28 28 C 1.53778 * 113.61716 * 97.49809 * 2 1 3 29 29 H 1.08992 * 109.47287 * 59.99710 * 1 2 3 30 30 H 1.08998 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47050 * 299.99872 * 1 2 3 32 32 H 1.09004 * 112.91115 * 228.75268 * 2 1 3 33 33 H 1.09002 * 113.61530 * 334.57056 * 3 2 1 34 34 H 1.09002 * 113.69113 * 203.67533 * 3 2 1 35 35 H 1.09007 * 113.61373 * 270.80558 * 4 3 2 36 36 H 1.09000 * 109.58869 * 6.62812 * 8 7 5 37 37 H 1.08997 * 109.58387 * 246.19816 * 8 7 5 38 38 H 1.09000 * 109.49957 * 294.67913 * 9 8 7 39 39 H 1.09003 * 109.49513 * 174.58197 * 9 8 7 40 40 H 1.09000 * 109.46286 * 178.61284 * 10 9 8 41 41 H 1.08992 * 109.45895 * 58.64921 * 10 9 8 42 42 H 1.09004 * 109.46990 * 59.93989 * 13 11 10 43 43 H 1.09000 * 109.47087 * 179.97438 * 13 11 10 44 44 H 1.08995 * 109.47228 * 299.93560 * 13 11 10 45 45 H 1.09001 * 109.46928 * 302.09320 * 16 14 7 46 46 H 1.08996 * 109.47274 * 62.09472 * 16 14 7 47 47 H 1.09003 * 109.46847 * 305.06932 * 17 16 14 48 48 H 1.09003 * 109.47223 * 65.07020 * 17 16 14 49 49 H 1.08996 * 109.47224 * 299.99916 * 18 17 16 50 50 H 1.08999 * 109.46756 * 59.99946 * 18 17 16 51 51 H 0.97001 * 120.00398 * 0.02562 * 19 18 17 52 52 H 0.96998 * 119.99995 * 180.02562 * 23 22 20 53 53 H 1.09002 * 113.61743 * 156.33042 * 28 2 1 54 54 H 1.08997 * 113.61504 * 25.43261 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4091 0.0000 4 6 2.0930 1.3468 1.5356 5 6 3.3079 1.9346 2.2060 6 8 4.2067 2.3964 1.5352 7 7 3.3957 1.9473 3.5509 8 6 2.2659 1.5037 4.3789 9 6 2.7598 0.4277 5.3510 10 6 3.9476 0.9720 6.1479 11 6 5.0901 1.3192 5.1906 12 1 5.9440 1.6847 5.7608 13 6 5.4967 0.0699 4.4065 14 6 4.6227 2.4053 4.2167 15 1 4.4192 3.3250 4.7653 16 6 5.7100 2.6586 3.1705 17 6 7.0019 3.0850 3.8706 18 6 8.0506 3.4600 2.8215 19 7 9.2874 3.8689 3.4919 20 6 10.3738 4.2507 2.7509 21 1 10.3187 4.2508 1.6723 22 6 11.5459 4.6376 3.3861 23 7 11.6131 4.6370 4.7005 24 14 13.0282 5.1578 2.3752 25 1 12.6971 5.0707 0.9302 26 1 13.3931 6.5565 2.7155 27 1 14.1722 4.2604 2.6764 28 6 2.1460 -0.1839 1.3969 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9543 -0.6620 -0.7549 33 1 1.4945 2.1705 -0.4289 34 1 3.1591 1.4441 -0.4008 35 1 1.1574 1.7163 1.9556 36 1 1.4856 1.0892 3.7407 37 1 1.8703 2.3499 4.9407 38 1 3.0710 -0.4538 4.7905 39 1 1.9552 0.1588 6.0354 40 1 4.2853 0.2169 6.8577 41 1 3.6421 1.8676 6.6887 42 1 4.6425 -0.2954 3.8364 43 1 6.3101 0.3177 3.7246 44 1 5.8278 -0.7028 5.1003 45 1 5.8886 1.7449 2.6036 46 1 5.3858 3.4488 2.4934 47 1 6.8022 3.9460 4.5086 48 1 7.3748 2.2608 4.4787 49 1 8.2503 2.5991 2.1835 50 1 7.6777 4.2842 2.2135 51 1 9.3370 3.8684 4.4607 52 1 12.4320 4.9077 5.1444 53 1 3.1591 -0.5858 1.3780 54 1 1.4946 -0.7084 2.0958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692110063.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:19 Heat of formation + Delta-G solvation = -30.806460 kcal Electronic energy + Delta-G solvation = -29023.350489 eV Core-core repulsion = 25380.879128 eV Total energy + Delta-G solvation = -3642.471362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.06764 -40.02758 -38.24480 -37.30032 -35.33249 -34.29519 -33.13202 -31.02528 -30.56082 -28.45650 -27.25374 -26.60579 -26.27690 -24.98770 -24.69410 -23.01459 -21.96169 -21.19381 -19.64226 -19.18450 -19.09334 -18.18632 -17.23583 -16.81010 -16.50031 -16.10055 -16.02844 -15.68094 -15.37634 -15.27735 -15.12687 -14.93535 -14.67301 -14.37859 -14.13388 -13.71296 -13.65728 -13.38337 -13.31146 -13.21038 -13.11817 -12.91908 -12.80789 -12.72619 -12.41719 -12.19384 -12.15542 -12.08043 -11.96592 -11.90894 -11.77910 -11.69007 -11.55777 -11.31666 -11.17080 -11.15576 -11.09479 -10.97743 -9.88001 -9.46032 -9.06426 -7.99857 -5.29849 1.43186 1.45245 1.55890 1.70006 2.05731 2.52444 3.32688 3.47675 3.55296 3.65018 3.77153 3.80775 3.82319 3.92233 3.97311 4.09985 4.14014 4.19562 4.24619 4.29975 4.50304 4.54735 4.59966 4.62394 4.67843 4.68894 4.70694 4.75624 4.80863 4.84491 4.88838 4.89584 4.97224 4.98162 5.04429 5.08365 5.08757 5.13598 5.16777 5.25039 5.26101 5.27897 5.32273 5.39453 5.42503 5.44431 5.51111 5.55269 5.60424 5.79356 6.22807 6.56481 7.28199 7.33542 8.02274 8.29226 9.24068 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.016111 B = 0.002798 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.517713 B =10003.255430 C =11274.392512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.108 4.108 3 C -0.124 4.124 4 C -0.130 4.130 5 C 0.510 3.490 6 O -0.573 6.573 7 N -0.602 5.602 8 C 0.102 3.898 9 C -0.131 4.131 10 C -0.112 4.112 11 C -0.103 4.103 12 H 0.071 0.929 13 C -0.141 4.141 14 C 0.156 3.844 15 H 0.070 0.930 16 C -0.086 4.086 17 C -0.115 4.115 18 C 0.158 3.842 19 N -0.746 5.746 20 C -0.252 4.252 21 H 0.070 0.930 22 C -0.076 4.076 23 N -0.969 5.969 24 Si 0.979 3.021 25 H -0.269 1.269 26 H -0.288 1.288 27 H -0.288 1.288 28 C -0.109 4.109 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.137 0.863 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.033 0.967 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.057 0.943 48 H 0.061 0.939 49 H 0.008 0.992 50 H 0.008 0.992 51 H 0.375 0.625 52 H 0.254 0.746 53 H 0.065 0.935 54 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.537 -13.683 -0.296 34.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.127 4.127 3 C -0.162 4.162 4 C -0.151 4.151 5 C 0.300 3.700 6 O -0.453 6.453 7 N -0.335 5.335 8 C -0.019 4.019 9 C -0.169 4.169 10 C -0.150 4.150 11 C -0.123 4.123 12 H 0.090 0.910 13 C -0.198 4.198 14 C 0.052 3.948 15 H 0.088 0.912 16 C -0.124 4.124 17 C -0.153 4.153 18 C 0.032 3.968 19 N -0.389 5.389 20 C -0.384 4.384 21 H 0.088 0.912 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.807 3.193 25 H -0.194 1.194 26 H -0.215 1.215 27 H -0.214 1.214 28 C -0.147 4.147 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.154 0.846 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.026 0.974 50 H 0.026 0.974 51 H 0.207 0.793 52 H 0.062 0.938 53 H 0.083 0.917 54 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -31.009 -13.413 -0.809 33.796 hybrid contribution 1.647 0.659 -0.137 1.780 sum -29.362 -12.754 -0.946 32.026 Atomic orbital electron populations 1.21598 0.91934 1.02693 1.02605 1.22304 0.97069 0.96091 0.97212 1.22891 1.01122 0.98377 0.93828 1.22890 0.96773 0.98502 0.96943 1.21200 0.88854 0.77953 0.81995 1.90771 1.41669 1.47644 1.65186 1.48236 1.15527 1.64358 1.05351 1.22049 0.87744 0.98238 0.93915 1.21951 0.98498 0.98093 0.98379 1.21547 0.94624 1.01699 0.97117 1.21521 0.99071 0.95324 0.96343 0.91028 1.21819 1.00735 0.97334 0.99894 1.21196 0.83988 0.96543 0.93048 0.91205 1.21812 0.92212 1.02043 0.96362 1.21743 0.95213 1.00662 0.97677 1.20671 0.86112 0.95374 0.94687 1.42599 1.10270 1.80248 1.05742 1.19676 0.91701 1.35918 0.91062 0.91245 1.25641 1.01114 1.03119 0.96914 1.69826 1.27985 1.55847 1.08263 0.85004 0.78986 0.77270 0.78073 1.19361 1.21470 1.21441 1.22847 1.01366 0.92309 0.98198 0.92174 0.91367 0.91411 0.90686 0.90638 0.91786 0.84564 0.87407 0.90287 0.91351 0.88241 0.90916 0.91259 0.92065 0.94797 0.92035 0.92608 0.91521 0.92476 0.92047 0.97447 0.97446 0.79332 0.93759 0.91673 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 9.59 71.98 0.69 -0.31 16 2 C -0.11 -1.32 4.55 -10.27 -0.05 -1.37 16 3 C -0.12 -2.18 7.00 31.12 0.22 -1.97 16 4 C -0.13 -1.98 2.40 -11.02 -0.03 -2.01 16 5 C 0.51 12.12 7.06 87.65 0.62 12.73 16 6 O -0.57 -19.38 11.45 -3.05 -0.03 -19.42 16 7 N -0.60 -11.95 2.41 -795.02 -1.92 -13.87 16 8 C 0.10 1.10 6.33 86.36 0.55 1.65 16 9 C -0.13 -1.28 5.74 30.67 0.18 -1.11 16 10 C -0.11 -1.60 5.43 30.62 0.17 -1.43 16 11 C -0.10 -2.21 2.24 -10.71 -0.02 -2.24 16 12 H 0.07 1.76 6.86 -2.39 -0.02 1.74 16 13 C -0.14 -3.20 8.17 71.98 0.59 -2.61 16 14 C 0.16 3.84 2.74 44.97 0.12 3.97 16 15 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 16 C -0.09 -2.87 2.64 30.59 0.08 -2.79 16 17 C -0.11 -4.35 4.74 30.59 0.15 -4.20 16 18 C 0.16 7.57 6.26 86.38 0.54 8.11 16 19 N -0.75 -42.57 5.60 -343.45 -1.92 -44.50 16 20 C -0.25 -15.46 9.99 84.03 0.84 -14.62 16 21 H 0.07 4.17 7.83 -2.91 -0.02 4.14 16 22 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 23 N -0.97 -62.09 13.06 21.65 0.28 -61.81 16 24 Si 0.98 48.70 29.55 68.60 2.03 50.73 16 25 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 26 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 27 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 28 C -0.11 -1.36 7.01 31.12 0.22 -1.14 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.37 7.34 -2.39 -0.02 0.36 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.21 8.10 -2.39 -0.02 1.19 16 34 H 0.06 1.55 7.43 -2.39 -0.02 1.53 16 35 H 0.14 1.29 6.74 -2.38 -0.02 1.28 16 36 H 0.11 0.66 5.68 -2.39 -0.01 0.64 16 37 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.75 6.33 -2.39 -0.02 0.74 16 39 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 1.27 5.97 -2.39 -0.01 1.26 16 43 H 0.03 0.96 6.14 -2.39 -0.01 0.95 16 44 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.06 2.02 5.53 -2.39 -0.01 2.01 16 46 H 0.07 2.56 6.26 -2.39 -0.01 2.54 16 47 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.06 2.29 6.59 -2.39 -0.02 2.27 16 49 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 50 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 51 H 0.37 22.13 7.67 -92.71 -0.71 21.42 16 52 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 53 H 0.06 1.09 8.09 -2.39 -0.02 1.07 16 54 H 0.10 0.72 8.10 -2.39 -0.02 0.70 16 Total: -1.00 -75.82 397.47 3.91 -71.91 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.16 Total: 30.44 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 5.32 Total: -13.48 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -3.56 Total: -120.18 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.03 Total: -19.42 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.03 Total: 50.73 kcal Total: -75.82 3.91 -71.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692110063.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.103 kcal (2) G-P(sol) polarization free energy of solvation -75.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds