Wall clock time and date at job start Tue Mar 31 2020 15:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.49854 * 2 1 4 4 C 1.53034 * 109.50291 * 239.92845 * 2 1 3 5 5 C 1.53040 * 109.53749 * 301.38338 * 4 2 1 6 6 C 1.53190 * 109.31394 * 298.63190 * 5 4 2 7 7 N 1.46930 * 108.77351 * 54.63350 * 6 5 4 8 8 C 1.34773 * 120.62639 * 126.37496 * 7 6 5 9 9 O 1.21285 * 119.99847 * 175.18438 * 8 7 6 10 10 C 1.50694 * 120.00504 * 355.17625 * 8 7 6 11 11 C 1.52995 * 109.47584 * 185.88167 * 10 8 7 12 12 C 1.53004 * 115.55377 * 65.57064 * 11 10 8 13 13 C 1.52997 * 117.50198 * 211.24614 * 11 10 8 14 14 C 1.53003 * 117.49784 * 279.90138 * 11 10 8 15 15 C 1.46929 * 118.73799 * 306.64253 * 7 6 5 16 16 H 1.08990 * 109.58807 * 293.57066 * 15 7 6 17 17 C 1.53004 * 109.58179 * 173.14328 * 15 7 6 18 18 C 1.53005 * 109.46606 * 181.67314 * 17 15 7 19 19 C 1.53003 * 109.46830 * 185.20764 * 18 17 15 20 20 N 1.46498 * 109.46886 * 180.02562 * 19 18 17 21 21 C 1.36939 * 119.99774 * 180.02562 * 20 19 18 22 22 H 1.08001 * 119.99743 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99806 * 179.97438 * 21 20 19 24 24 N 1.31610 * 120.00169 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99704 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47300 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47014 * 120.00273 * 25 23 21 28 28 H 1.48504 * 109.47311 * 239.99806 * 25 23 21 29 29 H 1.09005 * 109.47000 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47372 * 300.07269 * 1 2 3 31 31 H 1.09004 * 109.47202 * 60.06998 * 1 2 3 32 32 H 1.08995 * 109.46365 * 181.35769 * 4 2 1 33 33 H 1.09004 * 109.45012 * 61.39341 * 4 2 1 34 34 H 1.09000 * 109.49957 * 178.67757 * 5 4 2 35 35 H 1.09007 * 109.49902 * 58.58321 * 5 4 2 36 36 H 1.09004 * 109.58732 * 294.85064 * 6 5 4 37 37 H 1.08997 * 109.70697 * 174.49428 * 6 5 4 38 38 H 1.09000 * 109.47166 * 65.87523 * 10 8 7 39 39 H 1.09001 * 109.46937 * 305.88351 * 10 8 7 40 40 H 1.09002 * 109.46932 * 58.07317 * 12 11 10 41 41 H 1.09003 * 109.46517 * 298.07514 * 12 11 10 42 42 H 1.08997 * 109.47323 * 178.07480 * 12 11 10 43 43 H 1.09005 * 117.50168 * 215.00397 * 13 11 10 44 44 H 1.09010 * 117.49640 * 0.02562 * 13 11 10 45 45 H 1.09001 * 117.49607 * 359.97438 * 14 11 10 46 46 H 1.09003 * 117.49937 * 144.96670 * 14 11 10 47 47 H 1.08995 * 109.47230 * 301.67209 * 17 15 7 48 48 H 1.08998 * 109.47172 * 61.67618 * 17 15 7 49 49 H 1.08993 * 109.47563 * 305.20709 * 18 17 15 50 50 H 1.08998 * 109.46825 * 65.21008 * 18 17 15 51 51 H 1.09002 * 109.46863 * 300.00030 * 19 18 17 52 52 H 1.09002 * 109.47049 * 60.00018 * 19 18 17 53 53 H 0.96995 * 120.00241 * 359.97438 * 20 19 18 54 54 H 0.97005 * 120.00038 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2484 5 6 1.5037 -2.1558 -1.2659 6 6 2.0153 -2.9038 -0.0308 7 7 1.6528 -2.1380 1.1696 8 6 0.9758 -2.7221 2.1781 9 8 0.7586 -2.1056 3.1997 10 6 0.4886 -4.1410 2.0364 11 6 -0.3679 -4.5098 3.2493 12 6 -1.6800 -3.7355 3.3907 13 6 -0.3573 -5.9707 3.7038 14 6 0.3612 -4.9050 4.5350 15 6 2.0371 -0.7220 1.2471 16 1 3.1227 -0.6402 1.2972 17 6 1.4140 -0.0890 2.4929 18 6 1.7814 1.3952 2.5487 19 6 1.2690 1.9985 3.8581 20 7 1.6203 3.4198 3.9113 21 6 1.2632 4.1731 4.9976 22 1 0.7222 3.7195 5.8150 23 6 1.5965 5.5197 5.0483 24 7 2.2553 6.0725 4.0520 25 14 1.1086 6.5475 6.5299 26 1 0.3807 5.6962 7.5049 27 1 2.3281 7.1017 7.1710 28 1 0.2299 7.6616 6.0919 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5150 0.8893 31 1 -0.3634 0.5128 -0.8906 32 1 3.1305 -0.7436 -1.2356 33 1 1.6981 -0.1957 -2.1388 34 1 1.8488 -2.6627 -2.1671 35 1 0.4139 -2.1360 -1.2537 36 1 3.0993 -3.0035 -0.0870 37 1 1.5593 -3.8927 0.0150 38 1 1.3436 -4.8145 1.9769 39 1 -0.1086 -4.2312 1.1289 40 1 -2.2865 -3.8822 2.4970 41 1 -1.4640 -2.6741 3.5131 42 1 -2.2240 -4.0986 4.2626 43 1 -1.2851 -6.3803 4.1034 44 1 0.2603 -6.6691 3.1388 45 1 1.4510 -4.9027 4.5166 46 1 -0.0936 -4.6130 5.4816 47 1 0.3299 -0.1935 2.4501 48 1 1.7925 -0.5907 3.3834 49 1 2.8648 1.5036 2.4982 50 1 1.3247 1.9145 1.7062 51 1 0.1856 1.8902 3.9085 52 1 1.7257 1.4792 4.7006 53 1 2.1065 3.8270 3.1774 54 1 2.4885 7.0134 4.0876 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692117152.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:27 Heat of formation + Delta-G solvation = -23.743952 kcal Electronic energy + Delta-G solvation = -29016.154351 eV Core-core repulsion = 25373.989242 eV Total energy + Delta-G solvation = -3642.165109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.84761 -39.52243 -37.99107 -37.30484 -35.40114 -34.27746 -33.13518 -31.01816 -30.69771 -29.14501 -27.95673 -27.19777 -25.60387 -24.68147 -23.28484 -23.14637 -21.92976 -21.47832 -19.77339 -19.18073 -19.13765 -17.76266 -17.05402 -16.80129 -16.54315 -16.38765 -15.83333 -15.65639 -15.39352 -15.31450 -15.20519 -14.87104 -14.63077 -14.57162 -14.10262 -13.68649 -13.63655 -13.39248 -13.18252 -13.14849 -12.94669 -12.88549 -12.78539 -12.73910 -12.39342 -12.31598 -12.22806 -12.10225 -12.03530 -11.94354 -11.88157 -11.69820 -11.54255 -11.29255 -11.13789 -11.06690 -10.97244 -10.61485 -9.78764 -9.41135 -9.05803 -7.99479 -5.29398 1.43496 1.45456 1.56148 1.80187 2.05841 2.52788 2.92701 3.33200 3.56230 3.72530 3.82917 3.86258 3.90238 3.96434 4.00042 4.11008 4.13378 4.19601 4.23505 4.28621 4.31984 4.52612 4.60356 4.61005 4.65706 4.68390 4.71104 4.72601 4.82895 4.83267 4.89930 4.91512 4.97426 4.99150 5.02397 5.06786 5.08971 5.10764 5.15910 5.19735 5.26880 5.27556 5.30291 5.34019 5.41859 5.43541 5.46754 5.54312 5.57823 5.82424 6.23248 6.61410 7.28656 7.41662 8.03046 8.29742 9.24480 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.003090 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.609937 B = 9059.388425 C =10785.012730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.132 4.132 6 C 0.101 3.899 7 N -0.608 5.608 8 C 0.503 3.497 9 O -0.558 6.558 10 C -0.096 4.096 11 C -0.119 4.119 12 C -0.114 4.114 13 C -0.152 4.152 14 C -0.182 4.182 15 C 0.158 3.842 16 H 0.067 0.933 17 C -0.085 4.085 18 C -0.115 4.115 19 C 0.158 3.842 20 N -0.746 5.746 21 C -0.252 4.252 22 H 0.070 0.930 23 C -0.075 4.075 24 N -0.969 5.969 25 Si 0.978 3.022 26 H -0.269 1.269 27 H -0.288 1.288 28 H -0.288 1.288 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.054 0.946 43 H 0.100 0.900 44 H 0.113 0.887 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.058 0.942 48 H 0.069 0.931 49 H 0.055 0.945 50 H 0.060 0.940 51 H 0.008 0.992 52 H 0.008 0.992 53 H 0.374 0.626 54 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.650 -29.591 -14.561 33.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.170 4.170 6 C -0.020 4.020 7 N -0.342 5.342 8 C 0.293 3.707 9 O -0.437 6.437 10 C -0.136 4.136 11 C -0.119 4.119 12 C -0.171 4.171 13 C -0.189 4.189 14 C -0.219 4.219 15 C 0.055 3.945 16 H 0.085 0.915 17 C -0.123 4.123 18 C -0.154 4.154 19 C 0.032 3.968 20 N -0.389 5.389 21 C -0.384 4.384 22 H 0.088 0.912 23 C -0.267 4.267 24 N -0.619 5.619 25 Si 0.806 3.194 26 H -0.193 1.193 27 H -0.215 1.215 28 H -0.215 1.215 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.118 0.882 44 H 0.132 0.868 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.076 0.924 48 H 0.087 0.913 49 H 0.074 0.926 50 H 0.078 0.922 51 H 0.026 0.974 52 H 0.026 0.974 53 H 0.206 0.794 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.849 -29.275 -13.856 32.513 hybrid contribution 0.056 1.486 0.854 1.715 sum -2.793 -27.789 -13.001 30.807 Atomic orbital electron populations 1.21819 0.95231 1.01700 1.00985 1.21451 0.96418 0.99489 0.94993 0.91144 1.21542 1.00789 0.96228 0.96445 1.21953 1.01498 0.95295 0.98269 1.22040 1.01323 0.95676 0.82999 1.48260 1.56383 1.10412 1.19118 1.21218 0.77222 0.89701 0.82580 1.90781 1.57419 1.65116 1.30354 1.21298 1.00759 0.92334 0.99175 1.21100 0.97653 0.97803 0.95393 1.21286 0.94711 0.99452 1.01697 1.23194 1.02758 0.90423 1.02479 1.22913 0.99098 1.04608 0.95292 1.21054 0.98083 0.80490 0.94876 0.91491 1.21833 1.00683 0.91944 0.97878 1.21753 1.00308 0.96919 0.96392 1.20673 0.96023 0.83820 0.96299 1.42606 1.68383 1.06011 1.21901 1.19683 1.29055 0.92011 0.97651 0.91222 1.25628 1.01665 0.98050 1.01368 1.69826 1.46294 1.12148 1.33673 0.85012 0.77286 0.78408 0.78676 1.19333 1.21492 1.21462 0.92044 0.94670 0.92206 0.91332 0.91055 0.88343 0.91391 0.90348 0.87209 0.86833 0.86554 0.91454 0.93923 0.92684 0.88152 0.86842 0.89548 0.90290 0.92383 0.91298 0.92633 0.92175 0.97420 0.97444 0.79360 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.16 71.98 0.59 -2.55 16 2 C -0.10 -2.21 2.24 -10.86 -0.02 -2.23 16 3 H 0.07 1.72 6.86 -2.38 -0.02 1.71 16 4 C -0.11 -1.59 5.43 30.62 0.17 -1.43 16 5 C -0.13 -1.26 5.74 30.67 0.18 -1.08 16 6 C 0.10 1.01 6.36 86.36 0.55 1.56 16 7 N -0.61 -11.43 2.42 -795.82 -1.93 -13.36 16 8 C 0.50 11.09 7.35 87.66 0.64 11.73 16 9 O -0.56 -17.55 10.12 -3.04 -0.03 -17.58 16 10 C -0.10 -1.33 3.95 29.84 0.12 -1.21 16 11 C -0.12 -2.05 1.59 -52.18 -0.08 -2.13 16 12 C -0.11 -2.30 9.46 71.98 0.68 -1.61 16 13 C -0.15 -1.93 9.92 30.61 0.30 -1.63 16 14 C -0.18 -3.45 9.85 30.62 0.30 -3.15 16 15 C 0.16 3.81 2.72 44.83 0.12 3.93 16 16 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 17 C -0.09 -2.76 2.64 30.60 0.08 -2.68 16 18 C -0.12 -4.34 4.74 30.60 0.14 -4.19 16 19 C 0.16 7.54 6.26 86.38 0.54 8.08 16 20 N -0.75 -42.51 5.60 -343.44 -1.92 -44.43 16 21 C -0.25 -15.46 9.99 84.03 0.84 -14.62 16 22 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 23 C -0.07 -4.58 5.50 84.86 0.47 -4.11 16 24 N -0.97 -62.06 13.06 21.65 0.28 -61.77 16 25 Si 0.98 48.62 29.55 68.60 2.03 50.64 16 26 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 27 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 28 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 29 H 0.06 1.25 5.97 -2.38 -0.01 1.23 16 30 H 0.03 0.99 6.10 -2.39 -0.01 0.97 16 31 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.07 0.73 6.34 -2.38 -0.02 0.72 16 36 H 0.08 0.67 8.14 -2.38 -0.02 0.66 16 37 H 0.11 0.53 5.91 -2.39 -0.01 0.51 16 38 H 0.11 1.04 7.95 -2.39 -0.02 1.02 16 39 H 0.12 1.05 7.62 -2.39 -0.02 1.03 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.04 1.14 6.74 -2.39 -0.02 1.12 16 42 H 0.05 1.05 8.11 -2.39 -0.02 1.03 16 43 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.06 2.04 5.50 -2.39 -0.01 2.03 16 48 H 0.07 2.57 6.24 -2.39 -0.01 2.55 16 49 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.06 2.23 6.60 -2.39 -0.02 2.22 16 51 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 52 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 53 H 0.37 22.09 7.67 -92.71 -0.71 21.38 16 54 H 0.25 15.50 8.31 -92.70 -0.77 14.73 16 Total: -1.00 -75.30 401.70 4.20 -71.10 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 0.15 Total: 32.73 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 5.61 Total: -17.32 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -3.57 Total: -119.57 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.03 Total: -17.58 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.64 kcal Total: -75.30 4.20 -71.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692117152.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.356 kcal (2) G-P(sol) polarization free energy of solvation -75.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds