Wall clock time and date at job start Tue Mar 31 2020 15:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46493 * 2 1 4 4 C 1.52997 * 109.47082 * 240.00328 * 2 1 3 5 5 C 1.52997 * 109.47154 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46909 * 59.99714 * 5 4 2 7 7 C 1.52997 * 109.47446 * 300.00107 * 6 5 4 8 8 C 1.52997 * 109.47154 * 60.00043 * 7 6 5 9 9 H 1.09003 * 109.47114 * 59.99882 * 8 7 6 10 10 C 1.52998 * 109.47423 * 180.02562 * 8 7 6 11 11 C 1.50704 * 109.46884 * 294.99837 * 10 8 7 12 12 O 1.21282 * 119.99866 * 0.02562 * 11 10 8 13 13 N 1.34769 * 119.99773 * 179.97438 * 11 10 8 14 14 C 1.46502 * 119.99978 * 175.04370 * 13 11 10 15 15 C 1.53007 * 110.43411 * 301.88368 * 14 13 11 16 16 N 1.46498 * 109.46731 * 307.72945 * 15 14 13 17 17 C 1.36946 * 120.00002 * 174.96592 * 16 15 14 18 18 H 1.08002 * 119.99578 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99973 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00042 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99709 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.47274 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47353 * 119.99884 * 21 19 17 24 24 H 1.48500 * 109.47163 * 240.00091 * 21 19 17 25 25 C 1.54885 * 110.49168 * 179.20032 * 14 13 11 26 26 C 1.54888 * 102.74835 * 279.26210 * 25 14 13 27 27 C 1.54265 * 104.19789 * 322.05788 * 26 25 14 28 28 C 1.53872 * 106.59637 * 23.60618 * 27 26 25 29 29 H 1.09001 * 109.47088 * 299.99312 * 1 2 3 30 30 H 1.08994 * 109.47599 * 59.99970 * 1 2 3 31 31 H 1.09005 * 109.46493 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47207 * 299.99786 * 4 2 1 33 33 H 1.08999 * 109.47385 * 59.99860 * 4 2 1 34 34 H 1.09001 * 109.47537 * 179.97438 * 5 4 2 35 35 H 1.09003 * 109.47114 * 300.00118 * 5 4 2 36 36 H 1.09005 * 109.47352 * 60.00529 * 6 5 4 37 37 H 1.09004 * 109.47024 * 180.02562 * 6 5 4 38 38 H 1.09003 * 109.47207 * 299.99981 * 7 6 5 39 39 H 1.08999 * 109.47385 * 179.97438 * 7 6 5 40 40 H 1.09005 * 109.47189 * 175.00300 * 10 8 7 41 41 H 1.09000 * 109.47429 * 55.00007 * 10 8 7 42 42 H 0.97005 * 120.00822 * 354.76883 * 13 11 10 43 43 H 1.08996 * 109.46782 * 67.72805 * 15 14 13 44 44 H 1.08996 * 109.47018 * 187.73286 * 15 14 13 45 45 H 0.97002 * 120.00649 * 354.96554 * 16 15 14 46 46 H 0.97005 * 119.99969 * 179.97438 * 20 19 17 47 47 H 1.09003 * 110.75594 * 37.57299 * 25 14 13 48 48 H 1.09002 * 110.76267 * 160.94689 * 25 14 13 49 49 H 1.08997 * 110.49242 * 203.37050 * 26 25 14 50 50 H 1.09004 * 110.59820 * 80.78842 * 26 25 14 51 51 H 1.09000 * 110.02805 * 264.32720 * 27 26 25 52 52 H 1.08990 * 110.07768 * 142.91387 * 27 26 25 53 53 H 1.08998 * 110.03430 * 240.71875 * 28 27 26 54 54 H 1.09000 * 110.03126 * 119.29062 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4415 -0.0003 7 6 3.5705 -0.7204 1.2489 8 6 2.0405 -0.7209 1.2493 9 1 1.6776 -1.7487 1.2494 10 6 1.5305 0.0008 2.4982 11 6 1.9297 -0.7768 3.7259 12 8 2.5604 -1.8065 3.6129 13 7 1.5866 -0.3273 4.9492 14 6 1.8788 -1.1361 6.1353 15 6 1.2112 -2.5083 6.0239 16 7 -0.2125 -2.3357 5.7246 17 6 -0.9977 -3.4300 5.4769 18 1 -0.5673 -4.4202 5.5019 19 6 -2.3465 -3.2664 5.1928 20 7 -2.8709 -2.0596 5.1619 21 14 -3.4177 -4.7592 4.8557 22 1 -2.5940 -5.9912 4.9508 23 1 -4.5140 -4.8178 5.8556 24 1 -3.9965 -4.6554 3.4921 25 6 1.4116 -0.4053 7.4185 26 6 2.5652 0.5939 7.6821 27 6 3.8389 -0.1905 7.3049 28 6 3.4024 -1.2906 6.3215 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2073 -2.1392 34 1 3.9334 -1.2348 -2.1394 35 1 3.9330 0.3072 -1.2498 36 1 3.7176 -2.4694 -0.0001 37 1 5.1705 -1.4407 -0.0003 38 1 3.9335 0.3075 1.2488 39 1 3.9338 -1.2342 2.1389 40 1 0.4441 0.0785 2.4547 41 1 1.9647 0.9996 2.5435 42 1 1.1498 0.5335 5.0449 43 1 1.6840 -3.0785 5.2244 44 1 1.3219 -3.0438 6.9668 45 1 -0.5991 -1.4463 5.7018 46 1 -3.8134 -1.9453 4.9630 47 1 0.4750 0.1238 7.2423 48 1 1.3106 -1.1061 8.2472 49 1 2.5902 0.8791 8.7338 50 1 2.4599 1.4765 7.0510 51 1 4.2785 -0.6391 8.1957 52 1 4.5593 0.4731 6.8270 53 1 3.6303 -2.2730 6.7350 54 1 3.9105 -1.1602 5.3660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698639693.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:40 Heat of formation + Delta-G solvation = -86.690298 kcal Electronic energy + Delta-G solvation = -29674.430200 eV Core-core repulsion = 26029.535534 eV Total energy + Delta-G solvation = -3644.894667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.46781 -40.00180 -38.40375 -36.19533 -34.37576 -33.92826 -33.07491 -32.71968 -29.97271 -29.63004 -28.38087 -26.77573 -26.20929 -24.00036 -23.31670 -22.13141 -21.46933 -21.13496 -20.54710 -20.26017 -19.12942 -17.90390 -17.23239 -16.50861 -16.36011 -16.04923 -15.83001 -15.64563 -15.35134 -15.23833 -15.07624 -14.88357 -14.69468 -14.34592 -14.05515 -13.83478 -13.63875 -13.33008 -13.19148 -12.95330 -12.84932 -12.70141 -12.61590 -12.35068 -12.33274 -12.23178 -12.16071 -12.06755 -11.91452 -11.83545 -11.74963 -11.68845 -11.63090 -11.28281 -11.27744 -11.05976 -10.92461 -10.79057 -10.27055 -9.75609 -8.94970 -7.96187 -5.21722 1.42225 1.43031 1.52749 1.90517 2.42263 2.54270 3.36579 3.54194 3.72554 3.74219 3.77091 3.84642 3.96348 4.10720 4.19161 4.20547 4.31929 4.42794 4.44408 4.50216 4.56604 4.60058 4.61335 4.68184 4.70428 4.72896 4.75003 4.84730 4.87774 4.90511 4.93465 4.94424 5.01577 5.09639 5.10021 5.14342 5.18356 5.22437 5.23804 5.32008 5.33455 5.34525 5.36766 5.41685 5.45507 5.49827 5.53221 5.61829 5.68945 5.86942 6.26992 6.81258 7.34427 7.54935 8.08995 8.38619 9.26829 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.008306 B = 0.005118 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3370.400104 B = 5469.069601 C = 7893.412487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.078 4.078 3 H 0.089 0.911 4 C -0.114 4.114 5 C -0.112 4.112 6 C -0.118 4.118 7 C -0.111 4.111 8 C -0.058 4.058 9 H 0.035 0.965 10 C -0.134 4.134 11 C 0.515 3.485 12 O -0.568 6.568 13 N -0.705 5.705 14 C 0.173 3.827 15 C 0.149 3.851 16 N -0.726 5.726 17 C -0.242 4.242 18 H 0.059 0.941 19 C -0.065 4.065 20 N -0.960 5.960 21 Si 0.964 3.036 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.293 1.293 25 C -0.117 4.117 26 C -0.112 4.112 27 C -0.114 4.114 28 C -0.118 4.118 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.089 0.911 41 H 0.118 0.882 42 H 0.406 0.594 43 H 0.013 0.987 44 H 0.014 0.986 45 H 0.378 0.622 46 H 0.251 0.749 47 H 0.066 0.934 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.076 0.924 51 H 0.073 0.927 52 H 0.072 0.928 53 H 0.059 0.941 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.527 12.054 -5.978 19.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.096 4.096 3 H 0.107 0.893 4 C -0.151 4.151 5 C -0.150 4.150 6 C -0.155 4.155 7 C -0.148 4.148 8 C -0.077 4.077 9 H 0.053 0.947 10 C -0.174 4.174 11 C 0.303 3.697 12 O -0.448 6.448 13 N -0.356 5.356 14 C 0.086 3.914 15 C 0.021 3.979 16 N -0.369 5.369 17 C -0.374 4.374 18 H 0.077 0.923 19 C -0.258 4.258 20 N -0.611 5.611 21 Si 0.793 3.207 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.220 1.220 25 C -0.155 4.155 26 C -0.150 4.150 27 C -0.151 4.151 28 C -0.157 4.157 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.136 0.864 42 H 0.241 0.759 43 H 0.031 0.969 44 H 0.032 0.968 45 H 0.211 0.789 46 H 0.060 0.940 47 H 0.085 0.915 48 H 0.092 0.908 49 H 0.101 0.899 50 H 0.094 0.906 51 H 0.092 0.908 52 H 0.091 0.909 53 H 0.077 0.923 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.944 11.118 -6.062 19.587 hybrid contribution -1.477 -0.883 -0.018 1.721 sum 13.467 10.235 -6.081 17.974 Atomic orbital electron populations 1.21924 0.95777 1.00983 1.02251 1.21123 0.94890 0.99999 0.93638 0.89307 1.21589 0.96033 0.99954 0.97551 1.21512 0.95073 1.01196 0.97185 1.21502 1.00266 0.98677 0.95070 1.21596 0.94241 1.00766 0.98238 1.20817 0.96084 0.97912 0.92930 0.94655 1.21830 1.03051 1.00771 0.91722 1.20994 0.78003 0.85399 0.85296 1.90596 1.41175 1.25990 1.87009 1.45798 1.61732 1.22717 1.05353 1.21219 0.94683 0.89864 0.85650 1.21077 0.84571 0.95780 0.96493 1.42229 1.04244 1.05773 1.84666 1.19531 0.91187 0.88224 1.38489 0.92325 1.25346 0.97904 0.98996 1.03535 1.69772 1.12432 1.21256 1.57653 0.85220 0.78898 0.79509 0.77048 1.20087 1.21433 1.21969 1.22680 0.99056 0.98507 0.95247 1.22345 0.92877 0.97354 1.02383 1.22092 0.97899 0.96587 0.98559 1.22361 0.93667 0.99655 1.00039 0.92548 0.91171 0.94867 0.93805 0.90498 0.91412 0.90691 0.94204 0.91464 0.91067 0.92730 0.89238 0.86387 0.75892 0.96878 0.96808 0.78910 0.93984 0.91486 0.90818 0.89851 0.90573 0.90847 0.90914 0.92267 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 8.85 71.98 0.64 -2.98 16 2 C -0.08 -1.71 2.25 -10.79 -0.02 -1.73 16 3 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 4 C -0.11 -2.31 5.20 30.59 0.16 -2.15 16 5 C -0.11 -2.05 5.92 30.59 0.18 -1.87 16 6 C -0.12 -2.69 5.92 30.59 0.18 -2.51 16 7 C -0.11 -2.83 4.95 30.59 0.15 -2.68 16 8 C -0.06 -1.62 1.37 -10.79 -0.01 -1.63 16 9 H 0.03 1.28 7.96 -2.39 -0.02 1.26 16 10 C -0.13 -3.67 4.96 29.85 0.15 -3.53 16 11 C 0.51 17.78 6.79 87.66 0.59 18.37 16 12 O -0.57 -23.69 10.91 -3.04 -0.03 -23.73 16 13 N -0.70 -22.13 4.54 -418.07 -1.90 -24.03 16 14 C 0.17 5.75 0.40 4.68 0.00 5.75 16 15 C 0.15 6.66 4.75 86.38 0.41 7.07 16 16 N -0.73 -38.15 5.31 -343.45 -1.82 -39.98 16 17 C -0.24 -14.29 9.99 84.03 0.84 -13.45 16 18 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 19 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 20 N -0.96 -58.34 13.06 21.65 0.28 -58.06 16 21 Si 0.96 47.87 29.55 68.60 2.03 49.90 16 22 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 23 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 24 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 25 C -0.12 -3.30 5.66 31.88 0.18 -3.12 16 26 C -0.11 -2.27 6.79 31.67 0.22 -2.05 16 27 C -0.11 -2.41 6.80 31.32 0.21 -2.20 16 28 C -0.12 -3.47 5.67 31.32 0.18 -3.29 16 29 H 0.06 1.37 6.32 -2.39 -0.02 1.36 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 1.73 5.95 -2.39 -0.01 1.71 16 40 H 0.09 2.64 6.17 -2.38 -0.01 2.62 16 41 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.41 10.63 8.49 -92.70 -0.79 9.85 16 43 H 0.01 0.67 6.54 -2.39 -0.02 0.66 16 44 H 0.01 0.64 8.02 -2.39 -0.02 0.62 16 45 H 0.38 20.18 7.27 -92.71 -0.67 19.50 16 46 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 47 H 0.07 2.00 8.09 -2.39 -0.02 1.98 16 48 H 0.07 2.20 7.97 -2.39 -0.02 2.18 16 49 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 51 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 52 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 53 H 0.06 1.82 7.84 -2.39 -0.02 1.80 16 54 H 0.06 1.95 6.54 -2.39 -0.02 1.93 16 Total: -1.00 -70.43 401.90 2.48 -67.95 By element: Atomic # 1 Polarization: 43.89 SS G_CDS: -0.60 Total: 43.29 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 4.52 Total: -15.36 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -3.44 Total: -122.06 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.03 Total: -23.73 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -70.43 2.48 -67.95 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698639693.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.740 kcal (2) G-P(sol) polarization free energy of solvation -70.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds