Wall clock time and date at job start Tue Mar 31 2020 15:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47658 * 2 1 4 4 C 1.53003 * 109.46951 * 119.99862 * 2 1 3 5 5 C 1.53000 * 109.47266 * 59.99619 * 4 2 1 6 6 C 1.52998 * 109.47072 * 60.00496 * 5 4 2 7 7 C 1.53004 * 109.47022 * 299.99735 * 6 5 4 8 8 C 1.53000 * 109.46981 * 60.00209 * 7 6 5 9 9 H 1.08995 * 109.47649 * 60.00007 * 8 7 6 10 10 C 1.53003 * 109.47266 * 180.02562 * 8 7 6 11 11 C 1.50706 * 109.46828 * 294.99861 * 10 8 7 12 12 O 1.21277 * 119.99797 * 0.02562 * 11 10 8 13 13 N 1.34772 * 119.99844 * 179.97438 * 11 10 8 14 14 C 1.46499 * 120.00206 * 174.90597 * 13 11 10 15 15 C 1.52995 * 110.01532 * 65.17644 * 14 13 11 16 16 N 1.46498 * 109.47061 * 55.14612 * 15 14 13 17 17 C 1.36936 * 120.00098 * 174.89862 * 16 15 14 18 18 H 1.08003 * 119.99978 * 0.02562 * 17 16 15 19 19 C 1.38810 * 120.00011 * 179.72316 * 17 16 15 20 20 N 1.31616 * 119.99826 * 0.28299 * 19 17 16 21 21 Si 1.86799 * 119.99870 * 180.27844 * 19 17 16 22 22 H 1.48504 * 109.46926 * 90.00344 * 21 19 17 23 23 H 1.48503 * 109.47275 * 210.00068 * 21 19 17 24 24 H 1.48496 * 109.47497 * 330.00404 * 21 19 17 25 25 C 1.54262 * 110.07626 * 186.59780 * 14 13 11 26 26 C 1.54895 * 104.19610 * 95.69310 * 25 14 13 27 27 C 1.54889 * 102.74731 * 37.94528 * 26 25 14 28 28 C 1.53883 * 110.02694 * 303.78919 * 14 13 11 29 29 H 1.08998 * 109.47259 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46947 * 300.00628 * 1 2 3 31 31 H 1.09007 * 109.46839 * 60.00270 * 1 2 3 32 32 H 1.09000 * 109.46895 * 299.99542 * 4 2 1 33 33 H 1.09003 * 109.47315 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47232 * 299.99919 * 5 4 2 35 35 H 1.09003 * 109.46892 * 179.97438 * 5 4 2 36 36 H 1.08997 * 109.47300 * 180.02562 * 6 5 4 37 37 H 1.08996 * 109.47563 * 59.99626 * 6 5 4 38 38 H 1.09003 * 109.47248 * 300.00311 * 7 6 5 39 39 H 1.09000 * 109.47247 * 180.02562 * 7 6 5 40 40 H 1.08998 * 109.47377 * 174.99675 * 10 8 7 41 41 H 1.09007 * 109.47097 * 54.99684 * 10 8 7 42 42 H 0.96999 * 119.99968 * 354.90459 * 13 11 10 43 43 H 1.08995 * 109.47727 * 295.14469 * 15 14 13 44 44 H 1.08999 * 109.46953 * 175.14536 * 15 14 13 45 45 H 0.97004 * 120.00285 * 354.90890 * 16 15 14 46 46 H 0.97001 * 119.99528 * 179.97438 * 20 19 17 47 47 H 1.08992 * 110.48832 * 214.37013 * 25 14 13 48 48 H 1.08997 * 110.48762 * 337.02301 * 25 14 13 49 49 H 1.08999 * 110.76077 * 279.63032 * 26 25 14 50 50 H 1.08996 * 110.75506 * 156.25480 * 26 25 14 51 51 H 1.09003 * 110.49041 * 203.37917 * 27 26 25 52 52 H 1.09004 * 110.49089 * 80.73414 * 27 26 25 53 53 H 1.08997 * 110.03247 * 359.94951 * 28 14 13 54 54 H 1.08999 * 110.03067 * 121.38094 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5298 -2.1637 1.2494 6 6 2.0399 -2.8851 0.0003 7 6 1.5299 -2.1639 -1.2491 8 6 2.0400 -0.7215 -1.2492 9 1 3.1300 -0.7214 -1.2492 10 6 1.5296 0.0000 -2.4982 11 6 2.1300 -0.6353 -3.7258 12 8 2.8908 -1.5730 -3.6128 13 7 1.8207 -0.1621 -4.9492 14 6 2.4884 -0.7048 -6.1349 15 6 2.1110 -2.1757 -6.3212 16 7 0.6525 -2.3027 -6.3745 17 6 0.0803 -3.5178 -6.6414 18 1 0.7042 -4.3827 -6.8122 19 6 -1.3017 -3.6393 -6.6863 20 7 -2.0621 -2.5854 -6.4777 21 14 -2.0824 -5.2985 -7.0427 22 1 -2.3087 -6.0234 -5.7665 23 1 -3.3810 -5.0963 -7.7341 24 1 -1.1782 -6.0948 -7.9106 25 6 2.0888 0.1057 -7.3852 26 6 3.2309 1.1391 -7.5490 27 6 4.4884 0.3236 -7.1579 28 6 4.0141 -0.5662 -5.9903 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6766 -0.2073 2.1392 33 1 3.1299 -0.7217 1.2491 34 1 0.4399 -2.1637 1.2494 35 1 1.8936 -2.6776 2.1392 36 1 1.6761 -3.9126 0.0001 37 1 3.1298 -2.8851 0.0002 38 1 0.4399 -2.1638 -1.2491 39 1 1.8929 -2.6781 -2.1390 40 1 1.8179 1.0502 -2.4546 41 1 0.4432 -0.0769 -2.5437 42 1 1.1560 0.5378 -5.0447 43 1 2.4961 -2.7585 -5.4845 44 1 2.5422 -2.5465 -7.2511 45 1 0.0921 -1.5260 -6.2209 46 1 -3.0279 -2.6703 -6.5094 47 1 2.0335 -0.5433 -8.2590 48 1 1.1370 0.6117 -7.2236 49 1 3.0904 1.9811 -6.8712 50 1 3.2978 1.4804 -8.5820 51 1 5.2877 0.9885 -6.8304 52 1 4.8206 -0.2904 -7.9950 53 1 4.2576 -0.0945 -5.0384 54 1 4.4856 -1.5470 -6.0529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698639694.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:44 Heat of formation + Delta-G solvation = -82.269946 kcal Electronic energy + Delta-G solvation = -29646.782758 eV Core-core repulsion = 26002.079771 eV Total energy + Delta-G solvation = -3644.702986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.52549 -40.20968 -38.51064 -36.17123 -34.44909 -33.71801 -32.92280 -32.49827 -29.93643 -29.65308 -28.49333 -26.96551 -26.18469 -24.01840 -23.32281 -22.80276 -21.76685 -21.13631 -20.22953 -19.27260 -19.10152 -17.89662 -17.29899 -16.67036 -16.45162 -16.33522 -16.01018 -15.62866 -15.36872 -15.18875 -15.01328 -14.73826 -14.53823 -14.36989 -14.06505 -13.76850 -13.58597 -13.43058 -13.27556 -13.15663 -12.84898 -12.66860 -12.58302 -12.41582 -12.22706 -12.18000 -12.13998 -11.97923 -11.90799 -11.88952 -11.74476 -11.70241 -11.59141 -11.39372 -11.10315 -11.05303 -10.92632 -10.77345 -10.29053 -9.80126 -8.94994 -7.96327 -5.22088 1.42639 1.44305 1.52455 1.89212 2.39907 2.54399 3.36290 3.54031 3.72762 3.74864 3.79960 3.82567 3.95117 4.11133 4.19103 4.27721 4.33294 4.41750 4.44393 4.51439 4.51646 4.54845 4.57205 4.64062 4.71205 4.76690 4.79243 4.82776 4.84538 4.91183 4.93560 4.94049 5.06352 5.10125 5.11476 5.13439 5.20952 5.22869 5.23670 5.27502 5.29525 5.36485 5.37389 5.44308 5.45933 5.50195 5.52186 5.62431 5.72172 5.86226 6.26600 6.78837 7.34028 7.52706 8.09020 8.38323 9.26691 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.008558 B = 0.004849 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3270.932813 B = 5773.558657 C = 8076.011261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.080 4.080 3 H 0.086 0.914 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.114 4.114 7 C -0.119 4.119 8 C -0.053 4.053 9 H 0.063 0.937 10 C -0.133 4.133 11 C 0.509 3.491 12 O -0.567 6.567 13 N -0.710 5.710 14 C 0.174 3.826 15 C 0.149 3.851 16 N -0.728 5.728 17 C -0.245 4.245 18 H 0.061 0.939 19 C -0.066 4.066 20 N -0.962 5.962 21 Si 0.966 3.034 22 H -0.292 1.292 23 H -0.289 1.289 24 H -0.274 1.274 25 C -0.115 4.115 26 C -0.111 4.111 27 C -0.118 4.118 28 C -0.109 4.109 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.041 0.959 40 H 0.120 0.880 41 H 0.092 0.908 42 H 0.405 0.595 43 H 0.007 0.993 44 H 0.017 0.983 45 H 0.377 0.623 46 H 0.251 0.749 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.083 0.917 51 H 0.083 0.917 52 H 0.067 0.933 53 H 0.063 0.937 54 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.252 12.943 10.819 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.099 4.099 3 H 0.104 0.896 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.152 4.152 7 C -0.156 4.156 8 C -0.072 4.072 9 H 0.081 0.919 10 C -0.173 4.173 11 C 0.297 3.703 12 O -0.446 6.446 13 N -0.361 5.361 14 C 0.087 3.913 15 C 0.021 3.979 16 N -0.370 5.370 17 C -0.377 4.377 18 H 0.079 0.921 19 C -0.259 4.259 20 N -0.612 5.612 21 Si 0.795 3.205 22 H -0.219 1.219 23 H -0.215 1.215 24 H -0.199 1.199 25 C -0.154 4.154 26 C -0.149 4.149 27 C -0.155 4.155 28 C -0.148 4.148 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.138 0.862 41 H 0.110 0.890 42 H 0.241 0.759 43 H 0.025 0.975 44 H 0.035 0.965 45 H 0.210 0.790 46 H 0.060 0.940 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.098 0.902 50 H 0.101 0.899 51 H 0.102 0.898 52 H 0.086 0.914 53 H 0.082 0.918 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.818 12.101 10.845 19.521 hybrid contribution -1.283 -1.117 -0.452 1.760 sum 9.535 10.984 10.393 17.877 Atomic orbital electron populations 1.21999 0.95297 1.01672 1.02116 1.21118 0.95924 0.99382 0.93426 0.89562 1.21541 1.00534 0.95029 0.97612 1.21564 1.00852 0.96243 0.96825 1.21463 1.00284 0.98455 0.94985 1.21631 0.99475 0.96577 0.97961 1.20784 0.99640 0.93778 0.92984 0.91850 1.21842 1.02062 1.01905 0.91455 1.21151 0.80898 0.82777 0.85465 1.90619 1.38404 1.28520 1.87101 1.46077 1.43460 1.41187 1.05407 1.21093 0.92739 0.91861 0.85602 1.21171 0.84704 0.95376 0.96606 1.42242 1.01068 1.08301 1.85433 1.19530 0.90411 0.88863 1.38909 0.92115 1.25377 0.96412 1.00467 1.03609 1.69772 1.03627 1.29567 1.58273 0.85259 0.77803 0.79975 0.77460 1.21899 1.21486 1.19913 1.22526 0.99576 0.97578 0.95673 1.22482 0.92977 0.96962 1.02431 1.22379 0.98156 0.97929 0.97071 1.22301 0.92900 1.00009 0.99573 0.93421 0.91510 0.92550 0.90397 0.91987 0.91957 0.91318 0.93342 0.92590 0.93426 0.94008 0.86223 0.88957 0.75909 0.97482 0.96539 0.78966 0.93980 0.91742 0.91156 0.90196 0.89881 0.89849 0.91376 0.91817 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.15 71.98 0.59 -2.36 16 2 C -0.08 -1.50 2.72 -10.79 -0.03 -1.53 16 3 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 4 C -0.11 -1.92 5.45 30.60 0.17 -1.75 16 5 C -0.12 -2.39 5.65 30.59 0.17 -2.22 16 6 C -0.11 -3.02 5.92 30.59 0.18 -2.84 16 7 C -0.12 -3.72 4.67 30.60 0.14 -3.58 16 8 C -0.05 -1.33 1.61 -10.79 -0.02 -1.35 16 9 H 0.06 1.74 7.96 -2.39 -0.02 1.72 16 10 C -0.13 -3.33 4.67 29.85 0.14 -3.19 16 11 C 0.51 16.96 6.59 87.66 0.58 17.53 16 12 O -0.57 -23.12 11.24 -3.02 -0.03 -23.16 16 13 N -0.71 -22.21 4.50 -419.65 -1.89 -24.10 16 14 C 0.17 5.83 0.57 4.33 0.00 5.84 16 15 C 0.15 6.73 4.64 86.38 0.40 7.14 16 16 N -0.73 -38.40 5.27 -343.47 -1.81 -40.22 16 17 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 18 H 0.06 3.58 7.83 -2.91 -0.02 3.56 16 19 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 20 N -0.96 -58.66 13.06 21.65 0.28 -58.38 16 21 Si 0.97 47.76 29.55 68.60 2.03 49.78 16 22 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 23 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 24 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 25 C -0.12 -3.37 5.74 31.67 0.18 -3.19 16 26 C -0.11 -2.32 6.91 31.89 0.22 -2.10 16 27 C -0.12 -2.59 6.83 31.67 0.22 -2.38 16 28 C -0.11 -3.22 5.22 31.32 0.16 -3.06 16 29 H 0.05 1.07 4.81 -2.39 -0.01 1.06 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.08 6.54 -2.38 -0.02 1.07 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.30 6.43 -2.39 -0.02 1.28 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.05 1.55 6.43 -2.39 -0.02 1.54 16 39 H 0.04 1.68 5.95 -2.39 -0.01 1.66 16 40 H 0.12 2.15 8.14 -2.39 -0.02 2.14 16 41 H 0.09 2.39 6.71 -2.38 -0.02 2.37 16 42 H 0.41 10.83 8.23 -92.71 -0.76 10.06 16 43 H 0.01 0.37 6.56 -2.39 -0.02 0.36 16 44 H 0.02 0.76 8.04 -2.39 -0.02 0.75 16 45 H 0.38 20.26 7.19 -92.71 -0.67 19.59 16 46 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 47 H 0.06 2.13 7.78 -2.39 -0.02 2.11 16 48 H 0.07 2.05 7.70 -2.39 -0.02 2.03 16 49 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 52 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 53 H 0.06 1.91 6.99 -2.39 -0.02 1.90 16 54 H 0.05 1.69 7.67 -2.39 -0.02 1.67 16 Total: -1.00 -70.69 394.61 2.44 -68.25 By element: Atomic # 1 Polarization: 44.45 SS G_CDS: -0.55 Total: 43.90 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 4.41 Total: -16.08 kcal Atomic # 7 Polarization: -119.28 SS G_CDS: -3.42 Total: -122.69 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.03 Total: -23.16 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.78 kcal Total: -70.69 2.44 -68.25 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698639694.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.019 kcal (2) G-P(sol) polarization free energy of solvation -70.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds