Wall clock time and date at job start Tue Mar 31 2020 15:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47920 * 2 1 4 4 C 1.53006 * 109.46981 * 239.99305 * 2 1 3 5 5 C 1.52996 * 109.47466 * 300.00439 * 4 2 1 6 6 C 1.53005 * 109.47017 * 300.00260 * 5 4 2 7 7 C 1.52995 * 109.47533 * 59.99695 * 6 5 4 8 8 C 1.53005 * 109.46996 * 119.99755 * 2 1 3 9 9 H 1.09002 * 109.47366 * 179.97438 * 8 2 1 10 10 C 1.52995 * 109.47206 * 299.99716 * 8 2 1 11 11 C 1.50699 * 109.47233 * 184.99717 * 10 8 2 12 12 O 1.21279 * 119.99765 * 0.02562 * 11 10 8 13 13 N 1.34775 * 119.99918 * 179.97438 * 11 10 8 14 14 C 1.46503 * 119.99843 * 174.81110 * 13 11 10 15 15 C 1.52996 * 110.43509 * 301.99473 * 14 13 11 16 16 N 1.46501 * 109.47542 * 307.73051 * 15 14 13 17 17 C 1.36927 * 119.99862 * 174.97177 * 16 15 14 18 18 H 1.07998 * 120.00480 * 359.97438 * 17 16 15 19 19 C 1.38820 * 119.99667 * 180.02562 * 17 16 15 20 20 N 1.31611 * 120.00045 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99840 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47202 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47241 * 119.99897 * 21 19 17 24 24 H 1.48501 * 109.46892 * 239.99605 * 21 19 17 25 25 C 1.54892 * 110.48514 * 179.31242 * 14 13 11 26 26 C 1.54893 * 102.74782 * 279.26768 * 25 14 13 27 27 C 1.54268 * 104.19413 * 322.05354 * 26 25 14 28 28 C 1.53871 * 106.59741 * 23.61661 * 27 26 25 29 29 H 1.08997 * 109.47172 * 300.00559 * 1 2 3 30 30 H 1.09006 * 109.47014 * 60.00251 * 1 2 3 31 31 H 1.08995 * 109.47920 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46778 * 60.00605 * 4 2 1 33 33 H 1.08996 * 109.46934 * 180.02562 * 4 2 1 34 34 H 1.09004 * 109.47049 * 59.99675 * 5 4 2 35 35 H 1.08997 * 109.47259 * 180.02562 * 5 4 2 36 36 H 1.09005 * 109.46639 * 180.02562 * 6 5 4 37 37 H 1.09004 * 109.46733 * 299.99608 * 6 5 4 38 38 H 1.08997 * 109.47096 * 179.97438 * 7 6 5 39 39 H 1.09010 * 109.46811 * 59.99940 * 7 6 5 40 40 H 1.08994 * 109.47413 * 304.99999 * 10 8 2 41 41 H 1.09004 * 109.46755 * 64.99823 * 10 8 2 42 42 H 0.97004 * 120.00257 * 354.81441 * 13 11 10 43 43 H 1.09002 * 109.46948 * 67.73454 * 15 14 13 44 44 H 1.09003 * 109.46733 * 187.72629 * 15 14 13 45 45 H 0.97007 * 119.99593 * 354.96963 * 16 15 14 46 46 H 0.97006 * 120.00031 * 179.97438 * 20 19 17 47 47 H 1.09006 * 110.75496 * 37.58009 * 25 14 13 48 48 H 1.09000 * 110.75383 * 160.95088 * 25 14 13 49 49 H 1.09004 * 110.48213 * 203.38140 * 26 25 14 50 50 H 1.08992 * 110.48645 * 80.73862 * 26 25 14 51 51 H 1.08994 * 110.03583 * 264.33002 * 27 26 25 52 52 H 1.08997 * 110.02667 * 142.89369 * 27 26 25 53 53 H 1.09005 * 110.02939 * 240.71326 * 28 27 26 54 54 H 1.08999 * 110.03566 * 119.28427 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.5299 -2.1639 -1.2492 6 6 2.0398 -2.8851 0.0002 7 6 1.5298 -2.1638 1.2494 8 6 2.0399 -0.7212 1.2493 9 1 3.1299 -0.7217 1.2491 10 6 1.5300 0.0001 2.4985 11 6 2.1308 -0.6352 3.7259 12 8 2.8923 -1.5723 3.6125 13 7 1.8227 -0.1613 4.9494 14 6 2.3150 -0.8480 6.1462 15 6 1.8418 -2.3028 6.1600 16 7 0.3895 -2.3459 5.9720 17 6 -0.2491 -3.5505 5.8462 18 1 0.3178 -4.4690 5.8852 19 6 -1.6251 -3.5913 5.6675 20 7 -2.3159 -2.4720 5.6195 21 14 -2.4965 -5.2347 5.4966 22 1 -1.5019 -6.3339 5.5848 23 1 -3.4949 -5.3813 6.5860 24 1 -3.1854 -5.2953 4.1824 25 6 1.8471 -0.1105 7.4254 26 6 2.8643 1.0519 7.5412 27 6 4.2040 0.4276 7.0995 28 6 3.8548 -0.7803 6.2124 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3635 -1.0276 -0.0005 32 1 1.6766 -0.2076 -2.1392 33 1 3.1299 -0.7218 -1.2490 34 1 0.4398 -2.1638 -1.2491 35 1 1.8936 -2.6779 -2.1388 36 1 1.6767 -3.9129 0.0000 37 1 3.1298 -2.8851 0.0002 38 1 1.8928 -2.6778 2.1394 39 1 0.4397 -2.1637 1.2493 40 1 1.8184 1.0503 2.4548 41 1 0.4436 -0.0768 2.5443 42 1 1.2749 0.6344 5.0375 43 1 2.3290 -2.8511 5.3537 44 1 2.0981 -2.7591 7.1162 45 1 -0.1196 -1.5209 5.9367 46 1 -3.2774 -2.5005 5.4943 47 1 0.8344 0.2733 7.3013 48 1 1.9092 -0.7662 8.2938 49 1 2.9279 1.4018 8.5716 50 1 2.5866 1.8695 6.8761 51 1 4.7687 0.0992 7.9720 52 1 4.7844 1.1535 6.5301 53 1 4.2500 -1.6949 6.6546 54 1 4.2658 -0.6406 5.2126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698639695.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:48 Heat of formation + Delta-G solvation = -82.797389 kcal Electronic energy + Delta-G solvation = -29902.194040 eV Core-core repulsion = 26257.468182 eV Total energy + Delta-G solvation = -3644.725858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.49684 -40.19150 -38.47060 -36.19041 -34.34409 -33.70431 -32.92442 -32.49330 -29.97642 -29.63482 -28.53389 -26.96625 -26.22027 -23.99996 -23.33989 -22.83168 -21.52584 -21.15214 -20.27323 -19.26784 -19.09902 -17.93835 -17.22245 -16.64427 -16.41146 -16.33813 -15.96782 -15.69316 -15.47492 -15.12287 -15.07745 -14.72120 -14.45168 -14.32184 -14.01240 -13.80494 -13.68185 -13.39852 -13.28398 -13.16887 -12.86949 -12.67920 -12.48450 -12.41079 -12.30346 -12.16538 -12.13965 -12.07177 -11.91489 -11.89355 -11.74478 -11.62944 -11.58815 -11.27512 -11.09442 -11.04787 -10.91366 -10.77121 -10.24652 -9.76592 -8.94225 -7.95547 -5.20683 1.41818 1.42707 1.52223 1.90869 2.43208 2.54451 3.37268 3.54397 3.73003 3.75455 3.80785 3.82667 3.96070 4.11292 4.19534 4.28615 4.33416 4.42742 4.44460 4.51341 4.51496 4.56983 4.59003 4.66475 4.71622 4.78048 4.79426 4.84440 4.85870 4.92124 4.94218 4.94678 5.06054 5.09748 5.11133 5.14148 5.18552 5.22875 5.24124 5.29615 5.31987 5.36313 5.37415 5.44681 5.46056 5.52143 5.53716 5.63094 5.72601 5.87703 6.27404 6.81676 7.35091 7.55412 8.09664 8.39335 9.27414 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.007912 B = 0.005658 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3537.942759 B = 4947.190469 C = 7503.565889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.080 4.080 3 H 0.087 0.913 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.114 4.114 7 C -0.117 4.117 8 C -0.052 4.052 9 H 0.065 0.935 10 C -0.133 4.133 11 C 0.514 3.486 12 O -0.568 6.568 13 N -0.705 5.705 14 C 0.173 3.827 15 C 0.149 3.851 16 N -0.725 5.725 17 C -0.239 4.239 18 H 0.058 0.942 19 C -0.065 4.065 20 N -0.960 5.960 21 Si 0.961 3.039 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.293 1.293 25 C -0.117 4.117 26 C -0.112 4.112 27 C -0.114 4.114 28 C -0.118 4.118 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.046 0.954 37 H 0.057 0.943 38 H 0.042 0.958 39 H 0.041 0.959 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.405 0.595 43 H 0.014 0.986 44 H 0.014 0.986 45 H 0.378 0.622 46 H 0.251 0.749 47 H 0.066 0.934 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.075 0.925 51 H 0.073 0.927 52 H 0.072 0.928 53 H 0.059 0.941 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.011 12.495 -7.872 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.098 4.098 3 H 0.106 0.894 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.151 4.151 7 C -0.154 4.154 8 C -0.071 4.071 9 H 0.083 0.917 10 C -0.173 4.173 11 C 0.302 3.698 12 O -0.447 6.447 13 N -0.356 5.356 14 C 0.086 3.914 15 C 0.021 3.979 16 N -0.368 5.368 17 C -0.371 4.371 18 H 0.076 0.924 19 C -0.258 4.258 20 N -0.611 5.611 21 Si 0.791 3.209 22 H -0.201 1.201 23 H -0.215 1.215 24 H -0.220 1.220 25 C -0.155 4.155 26 C -0.150 4.150 27 C -0.151 4.151 28 C -0.157 4.157 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.137 0.863 41 H 0.106 0.894 42 H 0.241 0.759 43 H 0.032 0.968 44 H 0.031 0.969 45 H 0.211 0.789 46 H 0.060 0.940 47 H 0.085 0.915 48 H 0.092 0.908 49 H 0.102 0.898 50 H 0.094 0.906 51 H 0.092 0.908 52 H 0.091 0.909 53 H 0.077 0.923 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.551 11.625 -7.945 18.212 hybrid contribution -1.312 -1.022 0.225 1.678 sum 10.240 10.603 -7.719 16.639 Atomic orbital electron populations 1.21989 0.95531 1.01519 1.01993 1.21119 0.95713 0.99451 0.93527 0.89432 1.21534 1.00605 0.94918 0.97543 1.21567 1.00734 0.96361 0.96856 1.21463 1.00334 0.98380 0.94958 1.21599 0.99198 0.96652 0.97979 1.20777 0.99630 0.93720 0.92974 0.91661 1.21819 1.01811 1.01896 0.91777 1.21017 0.80377 0.82978 0.85383 1.90596 1.37456 1.29579 1.87079 1.45808 1.54161 1.30875 1.04804 1.21217 0.93963 0.90725 0.85518 1.21071 0.84673 0.95443 0.96705 1.42213 1.02076 1.05013 1.87479 1.19497 0.90639 0.86893 1.40069 0.92391 1.25322 0.96883 0.99768 1.03781 1.69769 1.06231 1.26232 1.58844 0.85251 0.78461 0.80247 0.76925 1.20100 1.21503 1.22007 1.22684 0.99570 0.97766 0.95482 1.22349 0.93541 0.96677 1.02393 1.22094 0.97771 0.96195 0.99088 1.22360 0.93590 0.99280 1.00493 0.92801 0.91440 0.93699 0.90353 0.91778 0.92231 0.91186 0.93495 0.92375 0.93963 0.93989 0.86324 0.89441 0.75914 0.96834 0.96868 0.78923 0.94039 0.91495 0.90833 0.89845 0.90583 0.90838 0.90932 0.92261 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.15 71.98 0.59 -2.75 16 2 C -0.08 -1.64 2.72 -10.79 -0.03 -1.67 16 3 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 4 C -0.11 -2.04 5.45 30.59 0.17 -1.88 16 5 C -0.12 -2.60 5.65 30.59 0.17 -2.43 16 6 C -0.11 -3.21 5.92 30.59 0.18 -3.03 16 7 C -0.12 -3.94 4.67 30.59 0.14 -3.79 16 8 C -0.05 -1.41 1.61 -10.79 -0.02 -1.43 16 9 H 0.06 1.87 7.95 -2.39 -0.02 1.85 16 10 C -0.13 -3.61 4.67 29.85 0.14 -3.47 16 11 C 0.51 17.66 6.79 87.66 0.59 18.26 16 12 O -0.57 -23.53 10.91 -3.03 -0.03 -23.56 16 13 N -0.71 -22.09 4.54 -418.07 -1.90 -23.99 16 14 C 0.17 5.74 0.40 4.68 0.00 5.74 16 15 C 0.15 6.65 4.75 86.38 0.41 7.06 16 16 N -0.73 -37.86 5.31 -343.45 -1.82 -39.68 16 17 C -0.24 -14.02 9.99 84.04 0.84 -13.18 16 18 H 0.06 3.44 7.83 -2.91 -0.02 3.42 16 19 C -0.06 -3.80 5.50 84.87 0.47 -3.34 16 20 N -0.96 -58.21 13.06 21.65 0.28 -57.93 16 21 Si 0.96 47.86 29.55 68.60 2.03 49.89 16 22 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 24 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 25 C -0.12 -3.31 5.66 31.89 0.18 -3.13 16 26 C -0.11 -2.27 6.79 31.67 0.22 -2.06 16 27 C -0.11 -2.42 6.80 31.32 0.21 -2.21 16 28 C -0.12 -3.47 5.67 31.32 0.18 -3.29 16 29 H 0.05 1.20 6.54 -2.39 -0.02 1.18 16 30 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.04 1.15 4.81 -2.39 -0.01 1.14 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.37 6.43 -2.38 -0.02 1.36 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.04 1.80 5.95 -2.39 -0.01 1.78 16 39 H 0.04 1.53 6.43 -2.38 -0.02 1.51 16 40 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.09 2.58 6.71 -2.38 -0.02 2.56 16 42 H 0.41 10.63 8.49 -92.71 -0.79 9.84 16 43 H 0.01 0.69 6.54 -2.39 -0.02 0.68 16 44 H 0.01 0.61 8.02 -2.39 -0.02 0.59 16 45 H 0.38 20.09 7.27 -92.70 -0.67 19.42 16 46 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 47 H 0.07 2.00 8.09 -2.38 -0.02 1.98 16 48 H 0.07 2.20 7.97 -2.39 -0.02 2.18 16 49 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 52 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 53 H 0.06 1.82 7.84 -2.38 -0.02 1.80 16 54 H 0.06 1.94 6.55 -2.39 -0.02 1.92 16 Total: -1.00 -69.97 395.33 2.42 -67.55 By element: Atomic # 1 Polarization: 44.90 SS G_CDS: -0.58 Total: 44.32 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 4.44 Total: -16.60 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -3.44 Total: -121.60 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.03 Total: -23.56 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -69.97 2.42 -67.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698639695.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.245 kcal (2) G-P(sol) polarization free energy of solvation -69.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds