Wall clock time and date at job start Tue Mar 31 2020 15:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47133 * 2 1 4 4 C 1.53000 * 109.47494 * 120.00451 * 2 1 3 5 5 C 1.53003 * 109.47189 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47020 * 299.99546 * 5 4 2 7 7 C 1.53006 * 109.46932 * 60.00472 * 6 5 4 8 8 C 1.53003 * 109.46883 * 299.99612 * 7 6 5 9 9 H 1.08998 * 109.47055 * 299.99938 * 8 7 6 10 10 C 1.53000 * 109.47189 * 179.97438 * 8 7 6 11 11 C 1.50705 * 109.47073 * 64.99758 * 10 8 7 12 12 O 1.21279 * 119.99662 * 0.02562 * 11 10 8 13 13 N 1.34773 * 119.99850 * 180.27339 * 11 10 8 14 14 C 1.46498 * 119.99856 * 174.53891 * 13 11 10 15 15 C 1.53004 * 110.43526 * 302.00312 * 14 13 11 16 16 N 1.46504 * 109.46770 * 307.72460 * 15 14 13 17 17 C 1.36939 * 119.99783 * 174.97201 * 16 15 14 18 18 H 1.08009 * 120.00052 * 0.02562 * 17 16 15 19 19 C 1.38808 * 119.99970 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00145 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99995 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46959 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47269 * 119.99759 * 21 19 17 24 24 H 1.48498 * 109.47112 * 239.99996 * 21 19 17 25 25 C 1.54887 * 110.48819 * 179.31879 * 14 13 11 26 26 C 1.54892 * 102.74764 * 279.26537 * 25 14 13 27 27 C 1.54264 * 104.19577 * 322.05548 * 26 25 14 28 28 C 1.53883 * 106.60008 * 23.61175 * 27 26 25 29 29 H 1.09003 * 109.47133 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46602 * 299.99516 * 1 2 3 31 31 H 1.08994 * 109.47377 * 59.99593 * 1 2 3 32 32 H 1.08998 * 109.47081 * 60.00054 * 4 2 1 33 33 H 1.09001 * 109.46764 * 299.99926 * 4 2 1 34 34 H 1.08994 * 109.47073 * 179.97438 * 5 4 2 35 35 H 1.08998 * 109.47055 * 60.00050 * 5 4 2 36 36 H 1.08997 * 109.47614 * 300.00717 * 6 5 4 37 37 H 1.09003 * 109.47361 * 179.97438 * 6 5 4 38 38 H 1.09001 * 109.47386 * 180.02562 * 7 6 5 39 39 H 1.08998 * 109.47225 * 59.99447 * 7 6 5 40 40 H 1.09005 * 109.47224 * 305.00389 * 10 8 7 41 41 H 1.09002 * 109.47300 * 185.00491 * 10 8 7 42 42 H 0.97001 * 120.00636 * 354.54360 * 13 11 10 43 43 H 1.08995 * 109.47122 * 67.72793 * 15 14 13 44 44 H 1.08999 * 109.47157 * 187.72658 * 15 14 13 45 45 H 0.96994 * 119.99902 * 354.97700 * 16 15 14 46 46 H 0.96996 * 120.00274 * 180.02562 * 20 19 17 47 47 H 1.08994 * 110.75886 * 37.57365 * 25 14 13 48 48 H 1.08999 * 110.75931 * 160.95126 * 25 14 13 49 49 H 1.09002 * 110.48771 * 203.37928 * 26 25 14 50 50 H 1.09000 * 110.60265 * 80.78840 * 26 25 14 51 51 H 1.09002 * 110.03575 * 264.33050 * 27 26 25 52 52 H 1.08996 * 110.07702 * 142.91662 * 27 26 25 53 53 H 1.09004 * 110.03004 * 240.71936 * 28 27 26 54 54 H 1.08994 * 110.07554 * 119.30346 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5701 -0.7219 1.2488 6 6 4.0795 -1.4435 -0.0005 7 6 3.5695 -0.7221 -1.2497 8 6 2.0394 -0.7216 -1.2493 9 1 1.6758 -1.7491 -1.2492 10 6 1.5293 0.0003 -2.4982 11 6 1.9275 -0.7777 -3.7260 12 8 2.5568 -1.8082 -3.6131 13 7 1.5885 -0.3255 -4.9495 14 6 2.0764 -1.0152 -6.1463 15 6 3.6060 -1.0546 -6.1540 16 7 4.1303 0.2995 -5.9599 17 6 5.4786 0.4993 -5.8279 18 1 6.1555 -0.3414 -5.8673 19 6 5.9753 1.7822 -5.6434 20 7 5.1505 2.8068 -5.5959 21 14 7.8146 2.0548 -5.4641 22 1 8.5193 0.7506 -5.5532 23 1 8.2905 2.9502 -6.5490 24 1 8.0963 2.6801 -4.1470 25 6 1.5427 -0.3242 -7.4257 26 6 0.1081 -0.8949 -7.5492 27 6 0.2477 -2.3674 -7.1111 28 6 1.4992 -2.4440 -6.2191 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6768 -1.7490 1.2491 33 1 1.6767 -0.2075 2.1392 34 1 3.9335 -1.2353 2.1389 35 1 3.9338 0.3057 1.2486 36 1 3.7158 -2.4710 -0.0004 37 1 5.1695 -1.4435 -0.0011 38 1 3.9320 -1.2364 -2.1398 39 1 3.9331 0.3054 -1.2499 40 1 1.9644 0.9988 -2.5439 41 1 0.4431 0.0790 -2.4542 42 1 1.0216 0.4566 -5.0377 43 1 3.9568 -1.6992 -5.3481 44 1 3.9545 -1.4457 -7.1098 45 1 3.5224 1.0545 -5.9248 46 1 5.4976 3.7034 -5.4674 47 1 1.5182 0.7580 -7.2986 48 1 2.1437 -0.5990 -8.2925 49 1 -0.2388 -0.8350 -8.5808 50 1 -0.5747 -0.3629 -6.8866 51 1 0.3725 -3.0068 -7.9851 52 1 -0.6325 -2.6749 -6.5466 53 1 2.2313 -3.1204 -6.6603 54 1 1.2270 -2.7880 -5.2213 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698639696.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:52 Heat of formation + Delta-G solvation = -86.416178 kcal Electronic energy + Delta-G solvation = -29773.616404 eV Core-core repulsion = 26128.733624 eV Total energy + Delta-G solvation = -3644.882780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.46794 -40.00405 -38.40531 -36.19098 -34.37667 -33.94690 -33.05639 -32.72051 -29.97211 -29.63322 -28.37435 -26.74679 -26.21612 -24.00454 -23.30430 -22.14906 -21.46929 -21.14686 -20.53942 -20.26896 -19.12397 -17.90435 -17.22476 -16.56624 -16.33922 -15.97080 -15.88885 -15.61540 -15.33538 -15.32261 -15.07664 -14.87541 -14.63766 -14.36129 -14.03021 -13.90060 -13.59817 -13.30126 -13.19440 -12.97159 -12.86187 -12.65155 -12.56879 -12.37218 -12.33693 -12.26330 -12.15769 -12.07534 -11.91255 -11.83390 -11.74870 -11.70008 -11.63083 -11.28820 -11.27572 -11.08108 -10.91835 -10.79292 -10.24888 -9.76925 -8.94445 -7.95761 -5.21037 1.41901 1.42792 1.52344 1.89648 2.42848 2.54377 3.37108 3.54316 3.73089 3.74373 3.76760 3.84196 3.95650 4.10484 4.18939 4.19498 4.30423 4.42156 4.44284 4.50824 4.56146 4.57471 4.61328 4.65192 4.71575 4.73325 4.80970 4.85077 4.86504 4.92213 4.93890 4.94404 5.02051 5.08218 5.09973 5.14280 5.18527 5.22019 5.25417 5.31564 5.32482 5.34844 5.36651 5.41607 5.45826 5.52873 5.53204 5.59453 5.68410 5.87088 6.27290 6.81089 7.34892 7.54653 8.09502 8.39055 9.27270 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.007936 B = 0.005523 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3527.440046 B = 5068.158515 C = 7669.721980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 H 0.064 0.936 4 C -0.108 4.108 5 C -0.117 4.117 6 C -0.114 4.114 7 C -0.118 4.118 8 C -0.050 4.050 9 H 0.066 0.934 10 C -0.135 4.135 11 C 0.515 3.485 12 O -0.567 6.567 13 N -0.705 5.705 14 C 0.172 3.828 15 C 0.149 3.851 16 N -0.725 5.725 17 C -0.239 4.239 18 H 0.058 0.942 19 C -0.065 4.065 20 N -0.961 5.961 21 Si 0.962 3.038 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.293 1.293 25 C -0.117 4.117 26 C -0.112 4.112 27 C -0.114 4.114 28 C -0.118 4.118 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.036 0.964 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.405 0.595 43 H 0.014 0.986 44 H 0.014 0.986 45 H 0.378 0.622 46 H 0.251 0.749 47 H 0.066 0.934 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.076 0.924 51 H 0.073 0.927 52 H 0.072 0.928 53 H 0.059 0.941 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.986 -6.686 7.733 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 H 0.082 0.918 4 C -0.145 4.145 5 C -0.154 4.154 6 C -0.151 4.151 7 C -0.155 4.155 8 C -0.069 4.069 9 H 0.084 0.916 10 C -0.174 4.174 11 C 0.303 3.697 12 O -0.447 6.447 13 N -0.356 5.356 14 C 0.086 3.914 15 C 0.021 3.979 16 N -0.368 5.368 17 C -0.371 4.371 18 H 0.076 0.924 19 C -0.258 4.258 20 N -0.612 5.612 21 Si 0.792 3.208 22 H -0.201 1.201 23 H -0.215 1.215 24 H -0.220 1.220 25 C -0.155 4.155 26 C -0.150 4.150 27 C -0.151 4.151 28 C -0.157 4.157 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.102 0.898 41 H 0.139 0.861 42 H 0.241 0.759 43 H 0.032 0.968 44 H 0.032 0.968 45 H 0.211 0.789 46 H 0.060 0.940 47 H 0.085 0.915 48 H 0.092 0.908 49 H 0.101 0.899 50 H 0.094 0.906 51 H 0.092 0.908 52 H 0.091 0.909 53 H 0.078 0.922 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.350 -7.487 7.806 18.778 hybrid contribution 1.413 0.934 -0.194 1.705 sum -13.937 -6.554 7.612 17.180 Atomic orbital electron populations 1.21879 0.93724 1.02199 1.02479 1.21160 0.96587 0.99035 0.93631 0.91791 1.21555 0.94613 1.00860 0.97466 1.21536 0.96582 1.00267 0.97033 1.21467 0.99521 0.99332 0.94803 1.21599 0.96502 0.99188 0.98246 1.20782 0.94145 0.99061 0.92909 0.91586 1.21848 1.04122 0.99616 0.91836 1.20990 0.78141 0.85214 0.85361 1.90594 1.40786 1.26198 1.87087 1.45802 1.52572 1.32464 1.04791 1.21221 0.91523 0.93185 0.85498 1.21075 0.92900 0.87210 0.96718 1.42218 1.03820 1.03397 1.87376 1.19506 0.85255 0.92367 1.39979 0.92351 1.25330 1.01299 0.95402 1.03767 1.69770 1.34264 0.98286 1.58836 0.85240 0.81186 0.77470 0.76917 1.20062 1.21492 1.22027 1.22678 0.97489 0.99851 0.95470 1.22346 0.94986 0.95221 1.02412 1.22094 0.96671 0.97311 0.99065 1.22363 0.97953 0.94932 1.00479 0.92461 0.91539 0.91902 0.91784 0.90409 0.90902 0.92657 0.92226 0.93336 0.93662 0.94539 0.89791 0.86089 0.75912 0.96814 0.96836 0.78934 0.94037 0.91500 0.90813 0.89856 0.90578 0.90839 0.90926 0.92245 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.85 71.98 0.64 -1.73 16 2 C -0.09 -1.81 2.25 -10.79 -0.02 -1.83 16 3 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.11 -2.07 5.20 30.60 0.16 -1.91 16 5 C -0.12 -2.61 5.92 30.60 0.18 -2.42 16 6 C -0.11 -3.23 5.92 30.60 0.18 -3.05 16 7 C -0.12 -4.02 4.95 30.60 0.15 -3.87 16 8 C -0.05 -1.37 1.36 -10.79 -0.01 -1.39 16 9 H 0.07 1.92 7.96 -2.39 -0.02 1.90 16 10 C -0.13 -3.70 4.96 29.85 0.15 -3.55 16 11 C 0.51 17.74 6.79 87.66 0.60 18.34 16 12 O -0.57 -23.54 10.91 -3.03 -0.03 -23.57 16 13 N -0.70 -22.13 4.54 -418.07 -1.90 -24.03 16 14 C 0.17 5.74 0.40 4.68 0.00 5.74 16 15 C 0.15 6.64 4.75 86.38 0.41 7.05 16 16 N -0.73 -37.92 5.31 -343.44 -1.82 -39.75 16 17 C -0.24 -14.04 9.99 84.03 0.84 -13.20 16 18 H 0.06 3.46 7.83 -2.91 -0.02 3.44 16 19 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 20 N -0.96 -58.40 13.06 21.65 0.28 -58.12 16 21 Si 0.96 47.90 29.55 68.60 2.03 49.93 16 22 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 25 C -0.12 -3.30 5.66 31.89 0.18 -3.12 16 26 C -0.11 -2.27 6.79 31.67 0.22 -2.06 16 27 C -0.11 -2.42 6.80 31.32 0.21 -2.20 16 28 C -0.12 -3.47 5.67 31.32 0.18 -3.29 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.95 6.32 -2.39 -0.02 0.94 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.04 1.93 5.95 -2.39 -0.01 1.92 16 39 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 41 H 0.12 2.43 6.17 -2.39 -0.01 2.42 16 42 H 0.41 10.65 8.49 -92.71 -0.79 9.87 16 43 H 0.01 0.70 6.54 -2.39 -0.02 0.69 16 44 H 0.01 0.62 8.02 -2.39 -0.02 0.60 16 45 H 0.38 20.12 7.27 -92.71 -0.67 19.45 16 46 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 47 H 0.07 1.99 8.09 -2.39 -0.02 1.98 16 48 H 0.07 2.20 7.97 -2.39 -0.02 2.18 16 49 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 52 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 53 H 0.06 1.82 7.84 -2.39 -0.02 1.80 16 54 H 0.06 1.94 6.55 -2.39 -0.02 1.92 16 Total: -1.00 -70.07 401.90 2.48 -67.59 By element: Atomic # 1 Polarization: 44.41 SS G_CDS: -0.60 Total: 43.82 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 4.52 Total: -15.87 kcal Atomic # 7 Polarization: -118.46 SS G_CDS: -3.44 Total: -121.90 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.03 Total: -23.57 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -70.07 2.48 -67.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698639696.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.825 kcal (2) G-P(sol) polarization free energy of solvation -70.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds