Wall clock time and date at job start Tue Mar 31 2020 13:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47293 * 2 1 4 4 N 1.46502 * 109.47089 * 180.02562 * 3 2 1 5 5 C 1.36931 * 119.99935 * 180.02562 * 4 3 2 6 6 H 1.08006 * 120.00007 * 359.97438 * 5 4 3 7 7 C 1.38811 * 119.99967 * 180.02562 * 5 4 3 8 8 N 1.31623 * 119.99854 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00236 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46824 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47304 * 119.99580 * 9 7 5 12 12 H 1.48501 * 109.47253 * 239.99994 * 9 7 5 13 13 N 1.46496 * 109.46958 * 120.00361 * 2 1 3 14 14 C 1.34773 * 120.00264 * 294.92344 * 13 2 1 15 15 O 1.21284 * 119.99807 * 5.20855 * 14 13 2 16 16 C 1.50706 * 120.00226 * 185.19967 * 14 13 2 17 17 C 1.52999 * 109.46712 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.46659 * 180.02562 * 17 16 14 19 19 C 1.53005 * 109.47096 * 180.02562 * 18 17 16 20 20 C 1.54265 * 110.03158 * 292.91054 * 19 18 17 21 21 C 1.54964 * 104.15806 * 217.13624 * 20 19 18 22 22 C 1.54893 * 102.77947 * 37.88903 * 21 20 19 23 23 C 1.53874 * 110.03380 * 175.69028 * 19 18 17 24 24 C 1.53006 * 109.46724 * 239.99972 * 2 1 3 25 25 C 1.52991 * 117.51754 * 225.38775 * 24 2 1 26 26 C 1.52994 * 117.49971 * 294.01859 * 24 2 1 27 27 H 1.09002 * 109.47225 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47025 * 299.99769 * 1 2 3 29 29 H 1.08999 * 109.47197 * 59.99425 * 1 2 3 30 30 H 1.08999 * 109.47469 * 300.00409 * 3 2 1 31 31 H 1.09002 * 109.46897 * 60.00152 * 3 2 1 32 32 H 0.96999 * 119.99691 * 359.97438 * 4 3 2 33 33 H 0.97001 * 119.99758 * 180.02562 * 8 7 5 34 34 H 0.97003 * 120.00071 * 114.93112 * 13 2 1 35 35 H 1.08999 * 109.46996 * 300.00434 * 16 14 13 36 36 H 1.08993 * 109.46656 * 60.00314 * 16 14 13 37 37 H 1.08999 * 109.47670 * 299.99931 * 17 16 14 38 38 H 1.09003 * 109.46894 * 60.00829 * 17 16 14 39 39 H 1.09007 * 109.47481 * 300.00045 * 18 17 16 40 40 H 1.08997 * 109.47203 * 60.00390 * 18 17 16 41 41 H 1.08994 * 110.01573 * 54.29982 * 19 18 17 42 42 H 1.09005 * 110.48682 * 335.77878 * 20 19 18 43 43 H 1.08997 * 110.49153 * 98.42535 * 20 19 18 44 44 H 1.08994 * 110.72394 * 279.57439 * 21 20 19 45 45 H 1.09000 * 110.92200 * 156.29190 * 21 20 19 46 46 H 1.09000 * 110.48612 * 203.40636 * 22 21 20 47 47 H 1.08998 * 110.60397 * 80.81521 * 22 21 20 48 48 H 1.09001 * 110.03429 * 238.56988 * 23 19 18 49 49 H 1.09004 * 110.02961 * 359.95326 * 23 19 18 50 50 H 1.09000 * 115.54487 * 79.68503 * 24 2 1 51 51 H 1.09003 * 117.50123 * 214.97088 * 25 24 2 52 52 H 1.08999 * 117.50118 * 359.97438 * 25 24 2 53 53 H 1.09000 * 117.50113 * 359.97407 * 26 24 2 54 54 H 1.08999 * 117.50136 * 144.97271 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1898 2.6282 -0.0002 6 1 3.6498 3.5636 0.0002 7 6 5.5779 2.6282 -0.0013 8 7 6.2359 1.4883 -0.0023 9 14 6.5120 4.2459 0.0000 10 1 5.5470 5.3746 0.0016 11 1 7.3667 4.3230 1.2119 12 1 7.3648 4.3260 -1.2131 13 7 2.0183 -0.6907 1.1961 14 6 1.7792 -0.1738 2.4176 15 8 1.0804 0.8107 2.5332 16 6 2.3801 -0.8191 3.6398 17 6 1.9552 -0.0423 4.8876 18 6 2.5657 -0.6971 6.1283 19 6 2.1405 0.0793 7.3762 20 6 2.7763 1.4847 7.3664 21 6 3.1188 1.7563 8.8531 22 6 3.5915 0.3691 9.3547 23 6 2.6581 -0.6297 8.6400 24 6 2.0400 -0.7213 -1.2493 25 6 3.1740 -1.7322 -1.0685 26 6 1.7546 -2.2199 -1.3658 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.9900 0.6023 -0.0006 33 1 7.2060 1.4883 -0.0027 34 1 2.5138 -1.5200 1.1090 35 1 2.0300 -1.8485 3.7163 36 1 3.4669 -0.8101 3.5582 37 1 2.3050 0.9872 4.8113 38 1 0.8683 -0.0519 4.9689 39 1 2.2164 -1.7269 6.2049 40 1 3.6526 -0.6873 6.0467 41 1 1.0542 0.1611 7.4125 42 1 3.6818 1.4896 6.7595 43 1 2.0645 2.2230 6.9971 44 1 2.2340 2.0834 9.3992 45 1 3.9186 2.4916 8.9403 46 1 3.4745 0.2942 10.4358 47 1 4.6289 0.1918 9.0710 48 1 1.8230 -0.8912 9.2900 49 1 3.2115 -1.5274 8.3643 50 1 2.0306 -0.1343 -2.1677 51 1 3.9108 -1.8104 -1.8680 52 1 3.5573 -1.8834 -0.0594 53 1 1.2040 -2.6921 -0.5522 54 1 1.5571 -2.6188 -2.3607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698653071.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:12 Heat of formation + Delta-G solvation = -47.339416 kcal Electronic energy + Delta-G solvation = -28612.317877 eV Core-core repulsion = 24969.129592 eV Total energy + Delta-G solvation = -3643.188285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.44653 -39.52284 -38.85277 -36.28817 -35.20630 -34.74273 -33.16559 -31.77493 -30.51520 -29.53480 -27.48620 -26.59301 -24.83710 -23.88632 -23.16674 -22.90053 -21.63066 -21.17760 -20.41677 -20.17248 -19.13161 -18.35978 -17.02704 -16.86273 -16.50587 -16.32406 -16.04853 -15.90962 -15.51346 -15.21649 -15.15683 -14.89519 -14.18351 -14.14303 -14.01367 -13.78106 -13.75767 -13.51599 -13.28986 -12.97397 -12.88180 -12.76224 -12.51824 -12.39175 -12.28348 -12.16566 -12.02651 -11.94683 -11.92850 -11.79251 -11.76632 -11.53173 -11.45118 -11.32268 -11.15542 -11.12012 -11.00797 -10.94306 -10.42693 -9.83558 -8.91304 -7.94459 -5.19559 1.43064 1.43659 1.53629 1.82842 2.35622 2.55015 2.96015 3.37830 3.61951 3.68272 3.77054 3.80757 3.83829 3.91436 4.01442 4.11508 4.15071 4.16694 4.32296 4.49180 4.53222 4.59223 4.60305 4.62585 4.68634 4.71898 4.78646 4.79830 4.83642 4.87225 4.88667 4.92351 4.96656 4.97631 5.02868 5.07397 5.07848 5.15619 5.21720 5.26561 5.27171 5.31005 5.32967 5.37131 5.41131 5.47306 5.47842 5.51993 5.61379 5.78127 6.28763 6.73209 7.36546 7.46064 8.12638 8.44207 9.28511 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.008797 B = 0.003787 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3182.213302 B = 7391.795302 C = 9603.785867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.207 3.793 3 C 0.141 3.859 4 N -0.727 5.727 5 C -0.244 4.244 6 H 0.060 0.940 7 C -0.066 4.066 8 N -0.960 5.960 9 Si 0.964 3.036 10 H -0.275 1.275 11 H -0.292 1.292 12 H -0.289 1.289 13 N -0.712 5.712 14 C 0.510 3.490 15 O -0.574 6.574 16 C -0.135 4.135 17 C -0.095 4.095 18 C -0.104 4.104 19 C -0.091 4.091 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.160 4.160 25 C -0.181 4.181 26 C -0.145 4.145 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.014 0.986 31 H 0.022 0.978 32 H 0.382 0.618 33 H 0.251 0.749 34 H 0.405 0.595 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.038 0.962 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.061 0.939 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.100 0.900 51 H 0.089 0.911 52 H 0.092 0.908 53 H 0.109 0.891 54 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.081 -12.392 11.658 19.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.121 3.879 3 C 0.013 3.987 4 N -0.371 5.371 5 C -0.376 4.376 6 H 0.078 0.922 7 C -0.259 4.259 8 N -0.611 5.611 9 Si 0.794 3.206 10 H -0.200 1.200 11 H -0.220 1.220 12 H -0.216 1.216 13 N -0.367 5.367 14 C 0.298 3.702 15 O -0.453 6.453 16 C -0.175 4.175 17 C -0.133 4.133 18 C -0.141 4.141 19 C -0.109 4.109 20 C -0.165 4.165 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.155 4.155 24 C -0.179 4.179 25 C -0.219 4.219 26 C -0.181 4.181 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.032 0.968 31 H 0.040 0.960 32 H 0.216 0.784 33 H 0.060 0.940 34 H 0.244 0.756 35 H 0.141 0.859 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.119 0.881 51 H 0.108 0.892 52 H 0.110 0.890 53 H 0.127 0.873 54 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.564 -11.513 11.723 19.534 hybrid contribution 1.340 0.911 -0.445 1.680 sum -9.224 -10.602 11.278 18.019 Atomic orbital electron populations 1.21997 0.92768 1.02977 1.02451 1.19842 0.94195 0.90338 0.83544 1.21151 0.84563 0.95407 0.97550 1.42279 1.00618 1.05213 1.88979 1.19569 0.89735 0.87196 1.41076 0.92238 1.25357 0.96932 0.99733 1.03884 1.69787 1.06446 1.25270 1.59580 0.85206 0.78528 0.79988 0.76872 1.20018 1.21954 1.21578 1.46183 1.57863 1.27517 1.05119 1.21178 0.79721 0.83720 0.85566 1.90599 1.40030 1.27673 1.87034 1.21723 1.02065 1.02045 0.91664 1.21239 1.00661 0.98445 0.92941 1.21684 1.00308 0.99605 0.92522 1.21773 0.99964 0.94350 0.94850 1.22493 0.99924 0.96997 0.97082 1.22523 1.00988 0.97618 0.95214 1.22364 0.99226 0.94358 1.00238 1.22210 0.99291 0.98348 0.95659 1.22283 1.04973 0.92708 0.97924 1.22903 0.92481 1.03801 1.02677 1.23084 0.96993 0.93814 1.04256 0.90386 0.92799 0.91268 0.96831 0.95992 0.78437 0.94050 0.75567 0.85949 0.89216 0.94327 0.92008 0.90020 0.92235 0.91180 0.92929 0.92964 0.91103 0.91917 0.90704 0.92038 0.91031 0.91089 0.88140 0.89227 0.89015 0.87301 0.86988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 8.37 71.98 0.60 -3.57 16 2 C 0.21 6.95 0.52 3.61 0.00 6.95 16 3 C 0.14 6.37 4.89 86.38 0.42 6.79 16 4 N -0.73 -38.40 5.22 -343.45 -1.79 -40.19 16 5 C -0.24 -14.41 9.99 84.03 0.84 -13.57 16 6 H 0.06 3.54 7.83 -2.91 -0.02 3.51 16 7 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 8 N -0.96 -58.46 13.06 21.65 0.28 -58.18 16 9 Si 0.96 47.89 29.55 68.60 2.03 49.92 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 12 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 13 N -0.71 -22.15 4.49 -422.91 -1.90 -24.05 16 14 C 0.51 17.40 7.24 87.66 0.63 18.04 16 15 O -0.57 -23.98 12.22 -3.04 -0.04 -24.01 16 16 C -0.14 -3.50 5.70 29.85 0.17 -3.33 16 17 C -0.09 -2.50 4.35 30.59 0.13 -2.37 16 18 C -0.10 -2.10 4.34 30.60 0.13 -1.96 16 19 C -0.09 -1.78 2.93 -10.07 -0.03 -1.81 16 20 C -0.13 -2.91 5.50 31.69 0.17 -2.73 16 21 C -0.13 -2.36 6.91 31.91 0.22 -2.14 16 22 C -0.12 -2.02 6.83 31.67 0.22 -1.81 16 23 C -0.12 -1.87 6.46 31.32 0.20 -1.67 16 24 C -0.16 -4.79 4.48 -10.80 -0.05 -4.83 16 25 C -0.18 -5.07 8.98 30.59 0.27 -4.80 16 26 C -0.14 -3.05 9.53 30.59 0.29 -2.76 16 27 H 0.08 1.84 7.71 -2.39 -0.02 1.82 16 28 H 0.05 1.81 6.37 -2.39 -0.02 1.80 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.02 1.13 5.99 -2.39 -0.01 1.12 16 32 H 0.38 20.31 6.43 -92.71 -0.60 19.72 16 33 H 0.25 14.75 8.31 -92.71 -0.77 13.97 16 34 H 0.41 10.60 5.64 -92.71 -0.52 10.08 16 35 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.04 1.27 7.44 -2.39 -0.02 1.25 16 38 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 39 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.06 1.27 8.02 -2.39 -0.02 1.25 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.05 1.36 7.77 -2.38 -0.02 1.34 16 43 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.07 1.04 7.67 -2.38 -0.02 1.02 16 50 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 51 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 52 H 0.09 2.59 5.96 -2.39 -0.01 2.57 16 53 H 0.11 1.94 7.99 -2.39 -0.02 1.92 16 54 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -71.04 411.76 3.03 -68.02 By element: Atomic # 1 Polarization: 47.78 SS G_CDS: -0.26 Total: 47.52 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 4.71 Total: -19.03 kcal Atomic # 7 Polarization: -119.01 SS G_CDS: -3.41 Total: -122.42 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.04 Total: -24.01 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -71.04 3.03 -68.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698653071.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.677 kcal (2) G-P(sol) polarization free energy of solvation -71.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds