Wall clock time and date at job start Tue Mar 31 2020 13:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52994 * 109.46842 * 2 1 4 4 N 1.46505 * 109.47416 * 299.99687 * 3 2 1 5 5 C 1.36936 * 120.00047 * 180.02562 * 4 3 2 6 6 H 1.08002 * 119.99915 * 0.02562 * 5 4 3 7 7 C 1.38809 * 119.99973 * 180.02562 * 5 4 3 8 8 N 1.31621 * 119.99831 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99854 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47338 * 90.00356 * 9 7 5 11 11 H 1.48503 * 109.46858 * 209.99930 * 9 7 5 12 12 H 1.48495 * 109.47181 * 329.99664 * 9 7 5 13 13 N 1.46497 * 109.46572 * 240.00034 * 2 1 3 14 14 C 1.34781 * 119.99575 * 175.35976 * 13 2 1 15 15 O 1.21282 * 120.00028 * 356.05996 * 14 13 2 16 16 C 1.50696 * 119.99869 * 176.06386 * 14 13 2 17 17 C 1.53004 * 109.47061 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47326 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47385 * 179.97438 * 18 17 16 20 20 C 1.54271 * 110.03249 * 292.90797 * 19 18 17 21 21 C 1.54966 * 104.16026 * 217.13259 * 20 19 18 22 22 C 1.54896 * 102.77376 * 37.88695 * 21 20 19 23 23 C 1.53871 * 110.03490 * 175.68736 * 19 18 17 24 24 C 1.52993 * 109.46980 * 120.00165 * 2 1 3 25 25 C 1.53002 * 117.49980 * 121.83001 * 24 2 1 26 26 C 1.53007 * 117.50081 * 53.17027 * 24 2 1 27 27 H 1.09000 * 109.47062 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47018 * 300.00055 * 1 2 3 29 29 H 1.08993 * 109.47041 * 59.99530 * 1 2 3 30 30 H 1.08998 * 109.47763 * 60.00237 * 3 2 1 31 31 H 1.09003 * 109.46666 * 180.02562 * 3 2 1 32 32 H 0.96994 * 120.00011 * 0.02562 * 4 3 2 33 33 H 0.97003 * 119.99480 * 180.02562 * 8 7 5 34 34 H 0.96992 * 120.00856 * 355.63474 * 13 2 1 35 35 H 1.08996 * 109.47271 * 299.99385 * 16 14 13 36 36 H 1.08998 * 109.47598 * 60.00361 * 16 14 13 37 37 H 1.09002 * 109.46824 * 299.99438 * 17 16 14 38 38 H 1.08994 * 109.47171 * 59.99739 * 17 16 14 39 39 H 1.08993 * 109.47227 * 299.99953 * 18 17 16 40 40 H 1.09003 * 109.46938 * 59.99693 * 18 17 16 41 41 H 1.08997 * 110.01708 * 54.29959 * 19 18 17 42 42 H 1.08997 * 110.48389 * 335.78223 * 20 19 18 43 43 H 1.09003 * 110.48451 * 98.42315 * 20 19 18 44 44 H 1.08993 * 110.72106 * 279.57913 * 21 20 19 45 45 H 1.08994 * 110.91958 * 156.29449 * 21 20 19 46 46 H 1.08996 * 110.48167 * 203.40076 * 22 21 20 47 47 H 1.09001 * 110.59565 * 80.81674 * 22 21 20 48 48 H 1.08996 * 110.03742 * 238.56892 * 23 19 18 49 49 H 1.09001 * 110.03265 * 0.02562 * 23 19 18 50 50 H 1.09006 * 115.55399 * 267.50120 * 24 2 1 51 51 H 1.09002 * 117.49745 * 0.02562 * 25 24 2 52 52 H 1.09000 * 117.49705 * 145.01357 * 25 24 2 53 53 H 1.09001 * 117.49954 * 214.97458 * 26 24 2 54 54 H 1.09000 * 117.49460 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 6 1.8829 3.4440 -1.4131 6 1 2.5045 3.9686 -0.7026 7 6 1.4199 4.0985 -2.5463 8 7 1.7387 5.3583 -2.7550 9 14 0.3443 3.1912 -3.7748 10 1 -1.0831 3.3560 -3.3996 11 1 0.5664 3.7484 -5.1333 12 1 0.6944 1.7482 -3.7684 13 7 2.0183 -0.6906 -1.1962 14 6 3.3398 -0.7326 -1.4578 15 8 4.1187 -0.1387 -0.7427 16 6 3.8494 -1.5175 -2.6390 17 6 5.3735 -1.4018 -2.7089 18 6 5.8911 -2.1992 -3.9077 19 6 7.4150 -2.0830 -3.9781 20 6 7.8195 -0.6327 -4.3141 21 6 9.0486 -0.7879 -5.2450 22 6 8.6753 -2.0229 -6.1021 23 6 7.9592 -2.9667 -5.1141 24 6 2.0400 -0.7213 1.2492 25 6 2.9503 -1.9336 1.0428 26 6 1.5085 -2.1307 1.5177 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6768 1.9564 0.8899 31 1 3.1300 1.4424 -0.0005 32 1 0.9938 1.6619 -1.8345 33 1 1.4147 5.8158 -3.5467 34 1 1.3903 -1.1142 -1.8020 35 1 3.5698 -2.5650 -2.5271 36 1 3.4122 -1.1205 -3.5551 37 1 5.6536 -0.3543 -2.8206 38 1 5.8104 -1.7991 -1.7928 39 1 5.6110 -3.2466 -3.7957 40 1 5.4541 -1.8023 -4.8241 41 1 7.8563 -2.3830 -3.0277 42 1 7.0093 -0.1215 -4.8342 43 1 8.0924 -0.0929 -3.4073 44 1 9.9506 -0.9795 -4.6640 45 1 9.1752 0.0940 -5.8728 46 1 9.5728 -2.4966 -6.4998 47 1 8.0041 -1.7385 -6.9125 48 1 8.6652 -3.6950 -4.7152 49 1 7.1376 -3.4781 -5.6156 50 1 2.2372 -0.0849 2.1120 51 1 3.1863 -2.2170 0.0171 52 1 3.7462 -2.0949 1.7700 53 1 1.3564 -2.4217 2.5571 54 1 0.7958 -2.5442 0.8041 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698653073.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:16 Heat of formation + Delta-G solvation = -41.301633 kcal Electronic energy + Delta-G solvation = -28773.711388 eV Core-core repulsion = 25130.784922 eV Total energy + Delta-G solvation = -3642.926467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.60877 -39.48727 -38.51104 -36.73249 -35.13660 -34.90174 -33.41948 -31.76203 -30.52659 -29.54115 -27.90515 -26.59225 -25.25174 -23.23603 -23.09443 -22.71254 -21.63470 -21.14316 -20.50846 -20.37858 -19.70723 -17.96179 -17.40419 -16.81073 -16.71480 -16.42903 -16.24035 -15.95971 -15.38200 -15.19742 -14.95019 -14.86137 -14.71006 -14.19417 -14.00213 -13.71453 -13.60790 -13.53686 -13.35290 -13.15826 -12.96055 -12.83606 -12.41794 -12.38202 -12.28382 -12.09673 -11.97329 -11.95144 -11.92897 -11.82106 -11.77728 -11.53393 -11.45966 -11.33959 -11.20451 -11.16075 -11.06898 -10.94178 -10.33826 -9.89343 -9.22424 -8.03456 -5.35780 1.30517 1.38524 1.45451 1.87805 2.32234 2.46607 2.95505 3.27301 3.53649 3.66526 3.76266 3.80094 3.87341 3.95433 3.97633 4.04422 4.14427 4.16252 4.26464 4.37161 4.50223 4.51973 4.57288 4.58673 4.62417 4.70895 4.78709 4.80841 4.82717 4.87931 4.88290 4.94730 4.95318 4.97041 5.02588 5.06666 5.09587 5.15287 5.21325 5.26633 5.28984 5.30914 5.32023 5.34150 5.40856 5.46938 5.51828 5.60715 5.71743 5.79220 6.19593 6.76463 7.07219 7.52438 7.81827 8.06667 9.19165 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.009130 B = 0.003957 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.231208 B = 7074.419603 C = 9271.271959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.206 3.794 3 C 0.143 3.857 4 N -0.742 5.742 5 C -0.233 4.233 6 H 0.041 0.959 7 C -0.068 4.068 8 N -0.988 5.988 9 Si 0.961 3.039 10 H -0.272 1.272 11 H -0.296 1.296 12 H -0.247 1.247 13 N -0.717 5.717 14 C 0.509 3.491 15 O -0.564 6.564 16 C -0.136 4.136 17 C -0.098 4.098 18 C -0.103 4.103 19 C -0.092 4.092 20 C -0.127 4.127 21 C -0.127 4.127 22 C -0.124 4.124 23 C -0.117 4.117 24 C -0.165 4.165 25 C -0.169 4.169 26 C -0.147 4.147 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.016 0.984 31 H 0.031 0.969 32 H 0.367 0.633 33 H 0.258 0.742 34 H 0.410 0.590 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.037 0.963 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.073 0.927 50 H 0.094 0.906 51 H 0.091 0.909 52 H 0.082 0.918 53 H 0.105 0.895 54 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.358 -26.418 -2.204 26.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.119 3.881 3 C 0.016 3.984 4 N -0.388 5.388 5 C -0.364 4.364 6 H 0.059 0.941 7 C -0.259 4.259 8 N -0.639 5.639 9 Si 0.787 3.213 10 H -0.198 1.198 11 H -0.223 1.223 12 H -0.172 1.172 13 N -0.370 5.370 14 C 0.297 3.703 15 O -0.443 6.443 16 C -0.176 4.176 17 C -0.136 4.136 18 C -0.140 4.140 19 C -0.110 4.110 20 C -0.165 4.165 21 C -0.165 4.165 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.185 4.185 25 C -0.207 4.207 26 C -0.184 4.184 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.049 0.951 32 H 0.201 0.799 33 H 0.066 0.934 34 H 0.246 0.754 35 H 0.142 0.858 36 H 0.115 0.885 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.092 0.908 50 H 0.112 0.888 51 H 0.109 0.891 52 H 0.100 0.900 53 H 0.124 0.876 54 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.012 -25.825 -1.618 26.356 hybrid contribution -0.480 0.834 -0.730 1.208 sum 4.532 -24.991 -2.348 25.506 Atomic orbital electron populations 1.21992 0.91499 1.03705 1.02992 1.19843 0.94721 0.89307 0.84199 1.21186 0.97887 0.91110 0.88219 1.42427 1.61947 1.09320 1.25136 1.18989 1.24771 0.87747 1.04873 0.94099 1.25571 1.02928 0.96818 1.00534 1.69920 1.51990 1.12050 1.29954 0.85327 0.78952 0.79175 0.77842 1.19778 1.22274 1.17176 1.46047 1.07549 1.57085 1.26319 1.21103 0.82279 0.80493 0.86377 1.90674 1.56868 1.45186 1.51543 1.21764 0.97584 1.02084 0.96160 1.21257 0.93298 1.00024 0.99015 1.21676 0.94538 1.00596 0.97204 1.21774 0.95593 0.94640 0.99009 1.22493 0.98028 0.96988 0.98977 1.22528 0.97604 0.98502 0.97846 1.22362 1.00385 0.95650 0.97724 1.22206 1.00097 0.97571 0.95587 1.22389 1.06482 0.91349 0.98306 1.22932 0.94006 1.01648 1.02069 1.23068 0.96105 0.96238 1.02949 0.88812 0.90825 0.92978 0.96619 0.95078 0.79899 0.93376 0.75420 0.85819 0.88475 0.94388 0.92364 0.89971 0.91816 0.91503 0.92631 0.93282 0.91351 0.91920 0.90830 0.91811 0.91222 0.90847 0.88757 0.89091 0.89961 0.87645 0.87224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.18 71.99 0.59 -2.95 16 2 C 0.21 6.15 0.55 3.60 0.00 6.15 16 3 C 0.14 6.16 4.84 86.38 0.42 6.58 16 4 N -0.74 -36.50 4.98 -343.45 -1.71 -38.21 16 5 C -0.23 -14.23 10.47 84.03 0.88 -13.35 16 6 H 0.04 2.82 8.06 -2.91 -0.02 2.80 16 7 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 8 N -0.99 -65.97 13.97 21.65 0.30 -65.67 16 9 Si 0.96 45.92 27.74 68.60 1.90 47.82 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 12 H -0.25 -10.34 6.52 99.48 0.65 -9.69 16 13 N -0.72 -18.98 4.20 -422.93 -1.78 -20.76 16 14 C 0.51 15.41 4.84 87.66 0.42 15.83 16 15 O -0.56 -22.52 12.25 -3.04 -0.04 -22.56 16 16 C -0.14 -2.95 5.70 29.85 0.17 -2.78 16 17 C -0.10 -2.34 4.35 30.60 0.13 -2.21 16 18 C -0.10 -1.82 4.34 30.59 0.13 -1.69 16 19 C -0.09 -1.68 2.93 -10.07 -0.03 -1.71 16 20 C -0.13 -2.79 5.50 31.70 0.17 -2.62 16 21 C -0.13 -2.32 6.91 31.91 0.22 -2.10 16 22 C -0.12 -1.88 6.83 31.67 0.22 -1.66 16 23 C -0.12 -1.71 6.46 31.32 0.20 -1.51 16 24 C -0.17 -4.40 4.86 -10.79 -0.05 -4.45 16 25 C -0.17 -4.08 8.52 30.62 0.26 -3.82 16 26 C -0.15 -2.71 9.68 30.62 0.30 -2.42 16 27 H 0.09 1.58 6.89 -2.39 -0.02 1.57 16 28 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.05 1.42 6.86 -2.39 -0.02 1.41 16 30 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.03 1.57 5.73 -2.39 -0.01 1.56 16 32 H 0.37 16.48 4.21 -92.71 -0.39 16.09 16 33 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 34 H 0.41 8.04 8.48 -92.71 -0.79 7.25 16 35 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.04 1.17 7.44 -2.39 -0.02 1.16 16 38 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.14 8.02 -2.39 -0.02 1.12 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.05 1.34 7.77 -2.39 -0.02 1.33 16 43 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.07 0.95 7.67 -2.39 -0.02 0.93 16 50 H 0.09 2.74 8.06 -2.38 -0.02 2.72 16 51 H 0.09 2.21 5.16 -2.39 -0.01 2.20 16 52 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 53 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 54 H 0.11 1.64 7.18 -2.39 -0.02 1.62 16 Total: -1.00 -78.54 406.27 2.82 -75.72 By element: Atomic # 1 Polarization: 42.43 SS G_CDS: -0.37 Total: 42.06 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 4.50 Total: -18.41 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -3.19 Total: -124.63 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.04 Total: -22.56 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.82 kcal Total: -78.54 2.82 -75.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698653073.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.418 kcal (2) G-P(sol) polarization free energy of solvation -78.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds