Wall clock time and date at job start Tue Mar 31 2020 15:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47529 * 2 1 4 4 C 1.52997 * 109.47187 * 119.99800 * 2 1 3 5 5 C 1.52996 * 109.47479 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.46969 * 300.00022 * 5 4 2 7 7 C 1.53004 * 109.47347 * 60.00068 * 6 5 4 8 8 C 1.52999 * 109.47318 * 239.99858 * 2 1 3 9 9 C 1.52997 * 109.47038 * 59.99851 * 8 2 1 10 10 N 1.46501 * 109.47252 * 64.26781 * 9 8 2 11 11 C 1.36932 * 120.00244 * 174.91219 * 10 9 8 12 12 H 1.08000 * 120.00142 * 359.97438 * 11 10 9 13 13 C 1.38809 * 120.00099 * 179.72656 * 11 10 9 14 14 N 1.31621 * 119.99845 * 0.26715 * 13 11 10 15 15 Si 1.86804 * 120.00072 * 180.27806 * 13 11 10 16 16 H 1.48496 * 109.47412 * 89.99345 * 15 13 11 17 17 H 1.48501 * 109.46738 * 209.99585 * 15 13 11 18 18 H 1.48501 * 109.46804 * 329.99439 * 15 13 11 19 19 N 1.46497 * 109.47081 * 299.99748 * 8 2 1 20 20 C 1.34784 * 119.99989 * 184.11614 * 19 8 2 21 21 O 1.21276 * 119.99913 * 354.50616 * 20 19 8 22 22 C 1.50700 * 119.99916 * 174.51294 * 20 19 8 23 23 C 1.53781 * 113.61538 * 277.49512 * 22 20 19 24 24 C 1.53772 * 87.08255 * 220.01999 * 23 22 20 25 25 C 1.52998 * 113.61442 * 270.88318 * 24 23 22 26 26 C 1.53001 * 113.61535 * 139.97760 * 24 23 22 27 27 C 1.53779 * 113.61349 * 179.97438 * 22 20 19 28 28 H 1.09006 * 109.47144 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47391 * 299.99854 * 1 2 3 30 30 H 1.09000 * 109.47006 * 60.00533 * 1 2 3 31 31 H 1.09005 * 109.47481 * 300.00393 * 4 2 1 32 32 H 1.08997 * 109.47562 * 60.00064 * 4 2 1 33 33 H 1.09005 * 109.47232 * 59.99357 * 5 4 2 34 34 H 1.08999 * 109.47570 * 180.02562 * 5 4 2 35 35 H 1.09000 * 109.47271 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.47274 * 299.99660 * 6 5 4 37 37 H 1.09000 * 109.47117 * 180.02562 * 7 6 5 38 38 H 1.08999 * 109.47266 * 59.99588 * 7 6 5 39 39 H 1.08991 * 109.47319 * 304.26237 * 9 8 2 40 40 H 1.09005 * 109.47206 * 184.26335 * 9 8 2 41 41 H 0.96998 * 119.99587 * 354.91425 * 10 9 8 42 42 H 0.96998 * 119.99908 * 180.02562 * 14 13 11 43 43 H 0.97001 * 120.00374 * 4.11552 * 19 8 2 44 44 H 1.09001 * 112.85011 * 48.80188 * 22 20 19 45 45 H 1.09005 * 113.61063 * 334.57335 * 23 22 20 46 46 H 1.09004 * 113.61046 * 105.46851 * 23 22 20 47 47 H 1.09004 * 109.47295 * 157.49551 * 25 24 23 48 48 H 1.08994 * 109.47198 * 277.49525 * 25 24 23 49 49 H 1.08998 * 109.47426 * 37.49882 * 25 24 23 50 50 H 1.08993 * 109.47173 * 322.50816 * 26 24 23 51 51 H 1.09005 * 109.46664 * 82.50783 * 26 24 23 52 52 H 1.08997 * 109.47502 * 202.50005 * 26 24 23 53 53 H 1.08996 * 113.61502 * 254.52855 * 27 22 20 54 54 H 1.09005 * 113.61372 * 25.35163 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5699 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2489 8 6 2.0400 -0.7213 -1.2492 9 6 1.5300 -0.0001 -2.4984 10 7 2.1004 1.3483 -2.5510 11 6 1.8687 2.1479 -3.6382 12 1 1.2658 1.7844 -4.4572 13 6 2.4044 3.4275 -3.6854 14 7 3.1395 3.8705 -2.6875 15 14 2.0819 4.5211 -5.1651 16 1 0.8480 5.3146 -4.9348 17 1 3.2319 5.4400 -5.3615 18 1 1.9095 3.6781 -6.3754 19 7 1.5518 -2.1025 -1.2491 20 6 1.9444 -2.9561 -2.2155 21 8 2.6208 -2.5565 -3.1394 22 6 1.5429 -4.4071 -2.1479 23 6 2.4479 -5.2550 -1.2387 24 6 2.3441 -6.3624 -2.3005 25 6 1.1581 -7.3054 -2.0886 26 6 3.6597 -7.1051 -2.5422 27 6 2.0689 -5.2472 -3.3235 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6766 -0.2074 2.1393 32 1 1.6767 -1.7488 1.2493 33 1 3.9330 0.3072 1.2497 34 1 3.9333 -1.2349 2.1394 35 1 5.1705 -1.4409 0.0004 36 1 3.7175 -2.4694 0.0002 37 1 3.9339 -1.2343 -2.1388 38 1 3.9335 0.3074 -1.2487 39 1 0.4428 0.0665 -2.4611 40 1 1.8297 -0.5561 -3.3868 41 1 2.6422 1.6746 -1.8156 42 1 3.5136 4.7648 -2.7203 43 1 0.9459 -2.4028 -0.5537 44 1 0.4785 -4.5432 -1.9561 45 1 3.4542 -4.8514 -1.1255 46 1 1.9868 -5.5182 -0.2867 47 1 0.9026 -7.7860 -3.0331 48 1 1.4250 -8.0657 -1.3547 49 1 0.3015 -6.7364 -1.7272 50 1 4.4899 -6.4011 -2.4865 51 1 3.7861 -7.8768 -1.7827 52 1 3.6404 -7.5668 -3.5293 53 1 1.3020 -5.5042 -4.0542 54 1 2.9708 -4.8408 -3.7815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698655309.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:15 Heat of formation + Delta-G solvation = -48.515993 kcal Electronic energy + Delta-G solvation = -29950.226453 eV Core-core repulsion = 26306.987149 eV Total energy + Delta-G solvation = -3643.239305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.06435 -40.59239 -38.51776 -36.35384 -34.81272 -33.53326 -33.22871 -31.83485 -30.45648 -28.22284 -27.82476 -26.66331 -26.53634 -25.37273 -24.44800 -22.86203 -21.78505 -21.19087 -19.83473 -19.24716 -19.08374 -18.29974 -16.81713 -16.47737 -16.37499 -16.11762 -15.65384 -15.49140 -15.33185 -15.18918 -15.04010 -14.76837 -14.59502 -14.35430 -13.99797 -13.74760 -13.65204 -13.56586 -13.24789 -13.02290 -12.92678 -12.79060 -12.74319 -12.68681 -12.52230 -12.40603 -12.32807 -12.15206 -11.99096 -11.86360 -11.78399 -11.69694 -11.39967 -11.22636 -11.15511 -10.96936 -10.95025 -10.87024 -10.23617 -9.85912 -8.96364 -7.96642 -5.23862 1.42287 1.44805 1.53390 1.77673 2.28364 2.55725 3.35655 3.51085 3.60245 3.66995 3.75966 3.80447 3.82742 3.83906 4.09833 4.17222 4.19948 4.31111 4.40907 4.48960 4.51894 4.56489 4.58390 4.64025 4.74237 4.75527 4.80940 4.89470 4.91700 4.93579 4.96811 4.99203 5.00086 5.08848 5.09154 5.14422 5.19260 5.22091 5.26161 5.26769 5.29739 5.32294 5.37785 5.43489 5.44732 5.50402 5.52851 5.57086 5.66630 5.79040 6.25895 6.77380 7.32081 7.47868 8.07608 8.33932 9.26739 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.003745 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.353110 B = 7475.278538 C = 8438.551011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.054 0.946 4 C -0.102 4.102 5 C -0.118 4.118 6 C -0.104 4.104 7 C -0.120 4.120 8 C 0.196 3.804 9 C 0.146 3.854 10 N -0.731 5.731 11 C -0.244 4.244 12 H 0.063 0.937 13 C -0.071 4.071 14 N -0.966 5.966 15 Si 0.972 3.028 16 H -0.282 1.282 17 H -0.292 1.292 18 H -0.277 1.277 19 N -0.699 5.699 20 C 0.514 3.486 21 O -0.577 6.577 22 C -0.130 4.130 23 C -0.104 4.104 24 C -0.080 4.080 25 C -0.125 4.125 26 C -0.136 4.136 27 C -0.119 4.119 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.040 0.960 39 H 0.016 0.984 40 H 0.012 0.988 41 H 0.376 0.624 42 H 0.252 0.748 43 H 0.413 0.587 44 H 0.137 0.863 45 H 0.069 0.931 46 H 0.101 0.899 47 H 0.059 0.941 48 H 0.070 0.930 49 H 0.067 0.933 50 H 0.043 0.957 51 H 0.070 0.930 52 H 0.056 0.944 53 H 0.072 0.928 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.091 -24.341 11.598 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.072 0.928 4 C -0.140 4.140 5 C -0.155 4.155 6 C -0.142 4.142 7 C -0.159 4.159 8 C 0.109 3.891 9 C 0.019 3.981 10 N -0.375 5.375 11 C -0.376 4.376 12 H 0.081 0.919 13 C -0.264 4.264 14 N -0.617 5.617 15 Si 0.801 3.199 16 H -0.209 1.209 17 H -0.218 1.218 18 H -0.202 1.202 19 N -0.352 5.352 20 C 0.302 3.698 21 O -0.456 6.456 22 C -0.151 4.151 23 C -0.142 4.142 24 C -0.080 4.080 25 C -0.183 4.183 26 C -0.194 4.194 27 C -0.157 4.157 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.034 0.966 40 H 0.030 0.970 41 H 0.210 0.790 42 H 0.061 0.939 43 H 0.251 0.749 44 H 0.155 0.845 45 H 0.088 0.912 46 H 0.119 0.881 47 H 0.078 0.922 48 H 0.089 0.911 49 H 0.086 0.914 50 H 0.062 0.938 51 H 0.089 0.911 52 H 0.075 0.925 53 H 0.091 0.909 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.678 -24.033 10.800 26.760 hybrid contribution 0.201 1.535 -1.013 1.850 sum -4.477 -22.498 9.787 24.940 Atomic orbital electron populations 1.21816 0.93844 1.02525 1.01705 1.21280 0.96860 0.98930 0.93656 0.92770 1.21566 0.94996 1.01242 0.96171 1.21547 0.96249 1.00111 0.97603 1.21426 0.99651 0.99454 0.93640 1.21738 0.95143 0.99955 0.99050 1.20063 0.93070 0.81508 0.94422 1.21112 0.95041 0.85416 0.96542 1.42385 1.61618 1.12031 1.21439 1.19536 1.25379 0.95215 0.97515 0.91874 1.25486 1.00912 0.98933 1.01021 1.69805 1.40076 1.18310 1.33470 0.85165 0.76977 0.78575 0.79207 1.20912 1.21807 1.20197 1.45905 1.49655 1.09863 1.29793 1.21195 0.78900 0.88871 0.80883 1.90700 1.40607 1.79174 1.35122 1.22834 1.02964 0.88212 1.01101 1.22961 0.98840 0.94386 0.97988 1.21775 0.97014 0.93799 0.95434 1.21607 0.95886 0.98488 1.02273 1.21726 0.95475 1.00115 1.02041 1.22967 1.01070 0.95620 0.96013 0.90511 0.91205 0.94637 0.90244 0.89679 0.93702 0.89568 0.92747 0.90990 0.93283 0.94085 0.96586 0.96989 0.79015 0.93935 0.74906 0.84538 0.91190 0.88071 0.92222 0.91117 0.91423 0.93790 0.91146 0.92523 0.90934 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 8.67 71.98 0.62 -3.04 16 2 C -0.09 -2.61 1.87 -10.80 -0.02 -2.63 16 3 H 0.05 2.06 7.03 -2.39 -0.02 2.04 16 4 C -0.10 -2.15 5.03 30.59 0.15 -1.99 16 5 C -0.12 -2.75 5.92 30.59 0.18 -2.57 16 6 C -0.10 -2.88 5.77 30.60 0.18 -2.70 16 7 C -0.12 -4.55 4.24 30.61 0.13 -4.42 16 8 C 0.20 6.70 0.11 3.62 0.00 6.70 16 9 C 0.15 6.72 4.95 86.38 0.43 7.15 16 10 N -0.73 -40.18 4.99 -343.46 -1.72 -41.89 16 11 C -0.24 -14.81 9.99 84.03 0.84 -13.97 16 12 H 0.06 3.79 7.83 -2.91 -0.02 3.77 16 13 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 14 N -0.97 -61.26 13.06 21.65 0.28 -60.97 16 15 Si 0.97 48.82 29.55 68.60 2.03 50.85 16 16 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 17 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 18 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 19 N -0.70 -17.98 3.74 -422.85 -1.58 -19.56 16 20 C 0.51 14.82 6.69 87.66 0.59 15.41 16 21 O -0.58 -23.39 12.11 -3.02 -0.04 -23.43 16 22 C -0.13 -2.46 3.80 -11.01 -0.04 -2.50 16 23 C -0.10 -1.55 6.74 31.12 0.21 -1.34 16 24 C -0.08 -1.16 1.39 -51.65 -0.07 -1.23 16 25 C -0.13 -1.25 9.07 71.98 0.65 -0.60 16 26 C -0.14 -1.99 9.20 71.98 0.66 -1.33 16 27 C -0.12 -2.47 6.56 31.13 0.20 -2.27 16 28 H 0.08 1.46 6.78 -2.38 -0.02 1.45 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.03 1.16 6.34 -2.39 -0.02 1.14 16 31 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.08 1.33 6.95 -2.39 -0.02 1.31 16 33 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.73 7.55 -2.39 -0.02 1.72 16 37 H 0.05 2.16 6.07 -2.39 -0.01 2.15 16 38 H 0.04 1.84 6.72 -2.39 -0.02 1.83 16 39 H 0.02 0.74 6.21 -2.39 -0.01 0.73 16 40 H 0.01 0.64 6.20 -2.38 -0.01 0.62 16 41 H 0.38 21.50 5.38 -92.71 -0.50 21.00 16 42 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.41 7.34 6.18 -92.71 -0.57 6.77 16 44 H 0.14 1.81 7.66 -2.39 -0.02 1.79 16 45 H 0.07 1.30 7.91 -2.38 -0.02 1.28 16 46 H 0.10 0.97 8.10 -2.39 -0.02 0.95 16 47 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.07 0.56 7.34 -2.39 -0.02 0.55 16 50 H 0.04 0.76 7.94 -2.39 -0.02 0.74 16 51 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 52 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 53 H 0.07 1.42 8.10 -2.39 -0.02 1.40 16 54 H 0.06 1.77 7.39 -2.38 -0.02 1.75 16 Total: -1.00 -76.27 395.55 3.97 -72.30 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: -0.19 Total: 37.89 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 5.18 Total: -15.19 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -3.01 Total: -122.43 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.04 Total: -23.43 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 2.03 Total: 50.85 kcal Total: -76.27 3.97 -72.30 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698655309.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.786 kcal (2) G-P(sol) polarization free energy of solvation -76.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds