Wall clock time and date at job start Tue Mar 31 2020 15:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09010 * 109.47240 * 2 1 4 4 C 1.52996 * 109.47665 * 120.00341 * 2 1 3 5 5 C 1.53000 * 109.46710 * 59.99808 * 4 2 1 6 6 C 1.53005 * 109.47348 * 60.00406 * 5 4 2 7 7 C 1.53005 * 109.46739 * 299.99580 * 6 5 4 8 8 C 1.53000 * 109.46858 * 60.00120 * 7 6 5 9 9 C 1.53004 * 109.47107 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.47055 * 295.91240 * 9 8 7 11 11 C 1.36936 * 120.00065 * 175.38813 * 10 9 8 12 12 H 1.07994 * 119.99868 * 4.88889 * 11 10 9 13 13 C 1.38814 * 120.00000 * 184.88911 * 11 10 9 14 14 N 1.31618 * 119.99928 * 183.66819 * 13 11 10 15 15 Si 1.86796 * 119.99904 * 3.66773 * 13 11 10 16 16 H 1.48494 * 109.47366 * 91.85415 * 15 13 11 17 17 H 1.48498 * 109.47154 * 211.85253 * 15 13 11 18 18 H 1.48502 * 109.47235 * 331.85193 * 15 13 11 19 19 N 1.46497 * 109.47241 * 59.99908 * 8 7 6 20 20 C 1.34778 * 120.00138 * 175.73156 * 19 8 7 21 21 O 1.21278 * 120.00021 * 4.43497 * 20 19 8 22 22 C 1.50700 * 120.00127 * 184.44165 * 20 19 8 23 23 C 1.53778 * 113.61465 * 279.13453 * 22 20 19 24 24 C 1.53948 * 87.02288 * 220.04868 * 23 22 20 25 25 C 1.53005 * 113.53834 * 270.81234 * 24 23 22 26 26 C 1.52998 * 113.74868 * 139.94412 * 24 23 22 27 27 C 1.53781 * 113.61623 * 181.52762 * 22 20 19 28 28 H 1.08998 * 109.47105 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46514 * 299.99641 * 1 2 3 30 30 H 1.09002 * 109.47354 * 59.99364 * 1 2 3 31 31 H 1.09001 * 109.47138 * 179.97438 * 4 2 1 32 32 H 1.08999 * 109.46996 * 300.00271 * 4 2 1 33 33 H 1.09002 * 109.47107 * 180.02562 * 5 4 2 34 34 H 1.09001 * 109.47462 * 299.99975 * 5 4 2 35 35 H 1.08999 * 109.46594 * 180.02562 * 6 5 4 36 36 H 1.08991 * 109.47228 * 59.99566 * 6 5 4 37 37 H 1.08991 * 109.47249 * 299.99973 * 7 6 5 38 38 H 1.08999 * 109.46852 * 179.97438 * 7 6 5 39 39 H 1.09004 * 109.46731 * 55.90516 * 9 8 7 40 40 H 1.08992 * 109.47274 * 175.90848 * 9 8 7 41 41 H 0.96997 * 119.99943 * 355.38685 * 10 9 8 42 42 H 0.96994 * 120.00069 * 179.97438 * 14 13 11 43 43 H 0.96998 * 120.00021 * 355.72809 * 19 8 7 44 44 H 1.09002 * 112.84908 * 50.32880 * 22 20 19 45 45 H 1.09004 * 113.61226 * 334.56807 * 23 22 20 46 46 H 1.09001 * 113.61757 * 105.46946 * 23 22 20 47 47 H 1.08993 * 109.47583 * 157.49266 * 25 24 23 48 48 H 1.09008 * 109.46707 * 277.49359 * 25 24 23 49 49 H 1.09000 * 109.46905 * 37.49100 * 25 24 23 50 50 H 1.09010 * 109.46720 * 322.40173 * 26 24 23 51 51 H 1.08993 * 109.47513 * 82.39705 * 26 24 23 52 52 H 1.08997 * 109.47370 * 202.40308 * 26 24 23 53 53 H 1.08999 * 113.61662 * 254.52877 * 27 22 20 54 54 H 1.08996 * 113.61451 * 25.34546 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5301 -2.1638 1.2490 6 6 2.0401 -2.8850 -0.0003 7 6 1.5299 -2.1636 -1.2495 8 6 2.0399 -0.7211 -1.2494 9 6 1.5304 0.0001 -2.4988 10 7 2.0978 -0.6314 -3.6928 11 6 1.7091 -0.2149 -4.9380 12 1 1.0453 0.6306 -5.0417 13 6 2.1684 -0.8793 -6.0669 14 7 1.8535 -0.4356 -7.2654 15 14 3.2334 -2.4031 -5.8851 16 1 2.3709 -3.6119 -5.8772 17 1 4.1843 -2.4811 -7.0231 18 1 3.9919 -2.3279 -4.6106 19 7 3.5049 -0.7211 -1.2495 20 6 4.1788 0.4428 -1.3363 21 8 3.5752 1.4947 -1.3332 22 6 5.6824 0.4373 -1.4373 23 6 6.3901 0.2608 -0.0836 24 6 7.4099 1.3059 -0.5713 25 6 8.5931 0.6985 -1.3276 26 6 7.8424 2.2967 0.5114 27 6 6.3014 1.8440 -1.4914 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 3.1301 -0.7216 1.2488 32 1 1.6768 -0.2075 2.1391 33 1 1.8931 -2.6776 2.1391 34 1 0.4401 -2.1638 1.2491 35 1 1.6763 -3.9125 -0.0005 36 1 3.1300 -2.8850 -0.0004 37 1 0.4400 -2.1637 -1.2494 38 1 1.8936 -2.6771 -2.1395 39 1 0.4428 -0.0631 -2.5366 40 1 1.8326 1.0467 -2.4629 41 1 2.7489 -1.3446 -3.6012 42 1 2.1748 -0.8997 -8.0542 43 1 3.9899 -1.5588 -1.1870 44 1 6.0520 -0.2326 -2.2138 45 1 5.7955 0.5947 0.7668 46 1 6.8161 -0.7321 0.0604 47 1 9.0423 1.4568 -1.9689 48 1 9.3352 0.3403 -0.6140 49 1 8.2449 -0.1342 -1.9386 50 1 6.9875 2.5425 1.1414 51 1 8.6265 1.8487 1.1216 52 1 8.2212 3.2049 0.0424 53 1 6.6558 2.1273 -2.4825 54 1 5.6819 2.6117 -1.0281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698655310.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:19 Heat of formation + Delta-G solvation = -45.606722 kcal Electronic energy + Delta-G solvation = -30334.019708 eV Core-core repulsion = 26690.906559 eV Total energy + Delta-G solvation = -3643.113149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.08559 -40.66745 -38.53757 -36.62114 -34.75921 -33.56412 -32.92333 -31.92604 -30.99457 -28.26001 -28.03540 -26.78930 -26.62734 -24.95046 -24.37026 -23.03525 -22.00308 -21.12891 -19.96454 -19.21278 -19.00886 -18.29851 -17.05813 -16.64152 -16.46632 -16.29807 -15.78996 -15.54832 -15.25367 -15.13207 -14.94854 -14.72849 -14.59454 -14.14110 -13.96879 -13.92229 -13.72125 -13.65088 -13.57940 -13.29094 -12.96308 -12.90381 -12.72691 -12.66715 -12.49186 -12.41481 -12.35380 -12.08501 -11.98437 -11.92753 -11.86793 -11.73129 -11.28390 -11.21678 -11.14228 -11.01963 -10.98082 -10.92089 -10.26137 -9.81283 -9.24195 -8.04569 -5.37102 1.29069 1.37544 1.44139 1.78546 2.34119 2.45318 3.25668 3.46218 3.53182 3.60112 3.67727 3.75737 3.79785 3.84379 3.94325 4.18196 4.19991 4.30945 4.36560 4.45187 4.50540 4.53851 4.56306 4.69229 4.72016 4.76383 4.77675 4.83266 4.86103 4.87526 4.90933 4.95136 4.96218 5.03838 5.12190 5.15102 5.17938 5.18919 5.22528 5.24719 5.25404 5.26732 5.39837 5.43791 5.47925 5.51146 5.59260 5.61437 5.72888 5.79907 6.18713 6.73385 7.06291 7.45596 7.81190 8.06055 9.17881 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.008661 B = 0.005913 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.215159 B = 4734.495823 C = 6738.227746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.057 0.943 4 C -0.101 4.101 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.121 4.121 8 C 0.186 3.814 9 C 0.146 3.854 10 N -0.743 5.743 11 C -0.233 4.233 12 H 0.041 0.959 13 C -0.065 4.065 14 N -0.986 5.986 15 Si 0.961 3.039 16 H -0.274 1.274 17 H -0.295 1.295 18 H -0.249 1.249 19 N -0.708 5.708 20 C 0.523 3.477 21 O -0.572 6.572 22 C -0.142 4.142 23 C -0.097 4.097 24 C -0.079 4.079 25 C -0.128 4.128 26 C -0.132 4.132 27 C -0.117 4.117 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.027 0.973 40 H 0.015 0.985 41 H 0.367 0.633 42 H 0.258 0.742 43 H 0.407 0.593 44 H 0.115 0.885 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.057 0.943 48 H 0.075 0.925 49 H 0.057 0.943 50 H 0.050 0.950 51 H 0.072 0.928 52 H 0.055 0.945 53 H 0.059 0.941 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.732 -5.829 23.955 26.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.076 0.924 4 C -0.139 4.139 5 C -0.152 4.152 6 C -0.150 4.150 7 C -0.159 4.159 8 C 0.100 3.900 9 C 0.019 3.981 10 N -0.390 5.390 11 C -0.364 4.364 12 H 0.059 0.941 13 C -0.256 4.256 14 N -0.637 5.637 15 Si 0.788 3.212 16 H -0.200 1.200 17 H -0.222 1.222 18 H -0.173 1.173 19 N -0.359 5.359 20 C 0.311 3.689 21 O -0.451 6.451 22 C -0.163 4.163 23 C -0.135 4.135 24 C -0.079 4.079 25 C -0.185 4.185 26 C -0.190 4.190 27 C -0.155 4.155 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.033 0.967 41 H 0.201 0.799 42 H 0.067 0.933 43 H 0.243 0.757 44 H 0.133 0.867 45 H 0.100 0.900 46 H 0.116 0.884 47 H 0.076 0.924 48 H 0.094 0.906 49 H 0.076 0.924 50 H 0.069 0.931 51 H 0.091 0.909 52 H 0.074 0.926 53 H 0.077 0.923 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.170 -4.963 23.810 26.362 hybrid contribution 0.229 -0.399 -1.270 1.351 sum 10.399 -5.362 22.540 25.396 Atomic orbital electron populations 1.21964 0.94383 1.02711 1.01436 1.21323 0.96350 0.99430 0.94118 0.92413 1.21439 1.00408 0.96146 0.95862 1.21560 1.01287 0.94546 0.97800 1.21544 1.01093 0.99292 0.93075 1.21822 1.02073 0.92725 0.99287 1.20424 0.79751 0.96391 0.93438 1.21160 0.95585 0.95731 0.85664 1.42489 1.51167 1.44048 1.01269 1.18971 1.23141 1.10055 0.84245 0.94085 1.25566 1.02718 1.03016 0.94341 1.69914 1.52266 1.43686 0.97819 0.85320 0.78591 0.79669 0.77637 1.20005 1.22174 1.17325 1.45956 1.06414 1.08978 1.74589 1.20848 0.90431 0.83356 0.74265 1.90614 1.70795 1.32891 1.50779 1.22824 0.89891 1.01348 1.02255 1.22967 0.96072 1.00854 0.93580 1.21787 0.93979 0.96185 0.95960 1.21625 0.96383 1.00518 1.00013 1.21698 1.01436 0.98402 0.97423 1.22944 0.97252 0.95094 1.00251 0.90755 0.91369 0.94490 0.92269 0.91440 0.90259 0.91326 0.90209 0.91248 0.90149 0.92625 0.95536 0.96675 0.79863 0.93339 0.75691 0.86722 0.90030 0.88434 0.92438 0.90564 0.92430 0.93073 0.90931 0.92605 0.92253 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 8.15 71.98 0.59 -3.14 16 2 C -0.09 -2.53 2.10 -10.79 -0.02 -2.55 16 3 H 0.06 1.98 6.34 -2.38 -0.02 1.96 16 4 C -0.10 -2.02 5.29 30.59 0.16 -1.85 16 5 C -0.11 -1.82 5.65 30.60 0.17 -1.65 16 6 C -0.11 -1.97 5.75 30.60 0.18 -1.80 16 7 C -0.12 -3.14 4.39 30.60 0.13 -3.00 16 8 C 0.19 5.73 0.09 3.61 0.00 5.73 16 9 C 0.15 6.32 4.34 86.38 0.37 6.69 16 10 N -0.74 -36.80 4.91 -343.45 -1.69 -38.48 16 11 C -0.23 -14.21 10.47 84.03 0.88 -13.33 16 12 H 0.04 2.82 8.06 -2.91 -0.02 2.79 16 13 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 14 N -0.99 -65.54 13.97 21.65 0.30 -65.24 16 15 Si 0.96 46.03 27.92 68.60 1.92 47.95 16 16 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 18 H -0.25 -10.41 6.27 99.48 0.62 -9.78 16 19 N -0.71 -20.06 3.51 -422.92 -1.48 -21.54 16 20 C 0.52 17.00 6.77 87.66 0.59 17.60 16 21 O -0.57 -23.63 12.19 -3.02 -0.04 -23.67 16 22 C -0.14 -3.59 3.79 -11.01 -0.04 -3.63 16 23 C -0.10 -1.72 6.76 31.18 0.21 -1.51 16 24 C -0.08 -1.43 1.39 -51.60 -0.07 -1.50 16 25 C -0.13 -1.96 9.07 71.98 0.65 -1.31 16 26 C -0.13 -2.10 9.20 71.98 0.66 -1.44 16 27 C -0.12 -3.06 6.55 31.12 0.20 -2.86 16 28 H 0.07 1.64 4.81 -2.39 -0.01 1.63 16 29 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.04 1.10 6.53 -2.39 -0.02 1.09 16 31 H 0.06 1.19 7.60 -2.39 -0.02 1.17 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.08 6.43 -2.39 -0.02 1.07 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.08 6.78 -2.39 -0.02 1.06 16 37 H 0.08 2.10 6.43 -2.39 -0.02 2.08 16 38 H 0.06 1.63 7.22 -2.39 -0.02 1.61 16 39 H 0.03 1.19 6.66 -2.38 -0.02 1.17 16 40 H 0.02 0.78 6.15 -2.39 -0.01 0.76 16 41 H 0.37 16.77 4.35 -92.71 -0.40 16.37 16 42 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 43 H 0.41 9.12 7.19 -92.71 -0.67 8.45 16 44 H 0.11 2.77 7.66 -2.39 -0.02 2.75 16 45 H 0.08 1.52 7.93 -2.39 -0.02 1.50 16 46 H 0.10 1.27 8.10 -2.39 -0.02 1.25 16 47 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 49 H 0.06 0.90 7.34 -2.39 -0.02 0.88 16 50 H 0.05 0.87 7.96 -2.38 -0.02 0.85 16 51 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 52 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 53 H 0.06 1.63 8.10 -2.39 -0.02 1.61 16 54 H 0.07 2.21 7.41 -2.39 -0.02 2.20 16 Total: -1.00 -77.24 390.71 3.88 -73.36 By element: Atomic # 1 Polarization: 40.99 SS G_CDS: -0.27 Total: 40.72 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 5.14 Total: -13.10 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -2.87 Total: -125.26 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.04 Total: -23.67 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.92 Total: 47.95 kcal Total: -77.24 3.88 -73.36 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698655310.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.752 kcal (2) G-P(sol) polarization free energy of solvation -77.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds