Wall clock time and date at job start Tue Mar 31 2020 15:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.43614 * 2 1 4 4 C 1.54887 * 110.48250 * 237.45405 * 2 1 3 5 5 C 1.54890 * 102.74680 * 203.38009 * 4 2 1 6 6 C 1.54268 * 104.19631 * 37.94573 * 5 4 2 7 7 H 1.08997 * 110.03308 * 95.72002 * 6 5 4 8 8 C 1.52997 * 110.03012 * 217.10629 * 6 5 4 9 9 C 1.50700 * 109.47045 * 293.54371 * 8 6 5 10 10 O 1.21284 * 119.99925 * 0.02562 * 9 8 6 11 11 N 1.34776 * 120.00032 * 180.02562 * 9 8 6 12 12 C 1.46503 * 120.00221 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47160 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.46794 * 180.02562 * 13 12 11 15 15 C 1.53036 * 109.45767 * 295.06676 * 14 13 12 16 16 C 1.53200 * 109.31110 * 178.61917 * 15 14 13 17 17 N 1.46916 * 108.77647 * 54.63417 * 16 15 14 18 18 C 1.36936 * 120.63259 * 126.41771 * 17 16 15 19 19 H 1.08003 * 119.99886 * 207.66112 * 18 17 16 20 20 C 1.38813 * 119.99909 * 27.65527 * 18 17 16 21 21 N 1.31615 * 120.00155 * 17.37661 * 20 18 17 22 22 Si 1.86807 * 119.99931 * 197.38423 * 20 18 17 23 23 H 1.48497 * 109.47129 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47150 * 120.00034 * 22 20 18 25 25 H 1.48505 * 109.46781 * 239.99869 * 22 20 18 26 26 C 1.46933 * 118.74123 * 306.39107 * 17 16 15 27 27 C 1.53039 * 109.45770 * 175.00005 * 14 13 12 28 28 C 1.53880 * 106.59585 * 336.38885 * 6 5 4 29 29 H 1.09000 * 109.47221 * 181.09240 * 1 2 3 30 30 H 1.09001 * 109.47292 * 61.08883 * 1 2 3 31 31 H 1.09005 * 109.47268 * 301.08819 * 1 2 3 32 32 H 1.08995 * 110.76111 * 321.69903 * 4 2 1 33 33 H 1.09004 * 110.75283 * 84.88285 * 4 2 1 34 34 H 1.08996 * 110.48359 * 156.62607 * 5 4 2 35 35 H 1.09004 * 110.48567 * 279.13170 * 5 4 2 36 36 H 1.08997 * 109.47483 * 53.54691 * 8 6 5 37 37 H 1.09007 * 109.46942 * 173.55091 * 8 6 5 38 38 H 0.97001 * 119.99923 * 359.97438 * 11 9 8 39 39 H 1.08997 * 109.47177 * 300.00056 * 12 11 9 40 40 H 1.08997 * 109.46721 * 60.00136 * 12 11 9 41 41 H 1.09000 * 109.46867 * 299.99883 * 13 12 11 42 42 H 1.08997 * 109.47034 * 60.00521 * 13 12 11 43 43 H 1.08995 * 109.46166 * 55.02621 * 14 13 12 44 44 H 1.09003 * 109.50191 * 298.56713 * 15 14 13 45 45 H 1.08999 * 109.50147 * 58.67104 * 15 14 13 46 46 H 1.09000 * 109.58611 * 294.84368 * 16 15 14 47 47 H 1.09005 * 109.58585 * 174.42485 * 16 15 14 48 48 H 0.97001 * 120.00069 * 179.97438 * 21 20 18 49 49 H 1.08993 * 109.58568 * 293.82320 * 26 17 16 50 50 H 1.08997 * 109.58931 * 173.39392 * 26 17 16 51 51 H 1.09002 * 109.49855 * 301.33594 * 27 14 13 52 52 H 1.09002 * 109.49615 * 61.43023 * 27 14 13 53 53 H 1.08997 * 110.02934 * 240.71028 * 28 6 5 54 54 H 1.09001 * 110.02870 * 119.28480 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0720 -0.7806 -1.2231 5 6 3.4906 -1.1971 -0.7614 6 6 3.3165 -1.5415 0.7322 7 1 3.1700 -2.6148 0.8533 8 6 4.5465 -1.0884 1.5213 9 6 5.7420 -1.9034 1.0998 10 8 5.6220 -2.7618 0.2513 11 7 6.9443 -1.6784 1.6655 12 6 8.1064 -2.4711 1.2562 13 6 9.3365 -2.0179 2.0452 14 6 10.5502 -2.8453 1.6171 15 6 10.3330 -4.3089 2.0081 16 6 11.5346 -5.1400 1.5473 17 7 12.7601 -4.5443 2.0964 18 6 13.6424 -5.3035 2.8179 19 1 14.2650 -4.8402 3.5690 20 6 13.7363 -6.6685 2.5839 21 7 13.2545 -7.1802 1.4711 22 14 14.5464 -7.7794 3.8486 23 1 15.0027 -6.9645 5.0031 24 1 13.5681 -8.7947 4.3145 25 1 15.7129 -8.4618 3.2330 26 6 13.0216 -3.1185 1.8563 27 6 11.8034 -2.3100 2.3136 28 6 2.0698 -0.7803 1.2163 29 1 -0.3634 -1.0275 0.0196 30 1 -0.3634 0.4968 -0.8996 31 1 -0.3634 0.5307 0.8801 32 1 1.4580 -1.6583 -1.4243 33 1 2.1220 -0.1365 -2.1011 34 1 3.8314 -2.0706 -1.3171 35 1 4.1902 -0.3705 -0.8854 36 1 4.7374 -0.0338 1.3228 37 1 4.3672 -1.2310 2.5871 38 1 7.0403 -0.9917 2.3438 39 1 7.9152 -3.5256 1.4547 40 1 8.2861 -2.3287 0.1906 41 1 9.5275 -0.9634 1.8462 42 1 9.1571 -2.1599 3.1109 43 1 10.6762 -2.7731 0.5369 44 1 10.2316 -4.3851 3.0907 45 1 9.4274 -4.6826 1.5302 46 1 11.5837 -5.1388 0.4584 47 1 11.4316 -6.1631 1.9093 48 1 13.3205 -8.1340 1.3074 49 1 13.1921 -2.9524 0.7927 50 1 13.8998 -2.8077 2.4222 51 1 11.9443 -1.2610 2.0533 52 1 11.6881 -2.4050 3.3934 53 1 2.3412 -0.0883 2.0135 54 1 1.3175 -1.4842 1.5723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698725063.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:48 Heat of formation + Delta-G solvation = -80.382838 kcal Electronic energy + Delta-G solvation = -27248.514637 eV Core-core repulsion = 23603.893482 eV Total energy + Delta-G solvation = -3644.621155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.99249 -39.63050 -39.02062 -36.66406 -35.05055 -33.58714 -33.00387 -31.49305 -30.76745 -29.98675 -28.09150 -26.69769 -25.15371 -24.33603 -23.63590 -22.12319 -21.69515 -21.05724 -20.59117 -20.19869 -18.70936 -18.05294 -17.13974 -16.78500 -16.70460 -16.13754 -15.94535 -15.66889 -15.38228 -15.29557 -14.90033 -14.55330 -14.45462 -14.36334 -14.23207 -13.93732 -13.80063 -13.72903 -13.22970 -13.05097 -12.93704 -12.71697 -12.59859 -12.57263 -12.32804 -12.15957 -11.97287 -11.89043 -11.78568 -11.66598 -11.60944 -11.52896 -11.52063 -11.42459 -11.22062 -11.08952 -10.99407 -10.66455 -10.54356 -10.01312 -8.68223 -7.87669 -5.32951 1.44406 1.45914 1.56905 1.73316 2.28540 2.50434 3.26488 3.64141 3.68793 3.71965 3.80506 3.85128 3.95097 4.03918 4.16951 4.23147 4.31333 4.37857 4.44084 4.57199 4.58324 4.62266 4.67446 4.69712 4.73883 4.76365 4.78836 4.81236 4.82421 4.89486 4.98216 5.03194 5.04010 5.08350 5.12058 5.14441 5.20806 5.24309 5.30425 5.35133 5.37707 5.40822 5.42038 5.45164 5.53267 5.56704 5.58857 5.61277 5.66580 5.79121 6.38755 6.65473 7.14432 7.36629 7.87420 8.38858 9.18568 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.029737 B = 0.001819 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.377159 B =15388.948840 C =15741.509087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.081 0.919 4 C -0.122 4.122 5 C -0.114 4.114 6 C -0.078 4.078 7 H 0.053 0.947 8 C -0.125 4.125 9 C 0.500 3.500 10 O -0.587 6.587 11 N -0.720 5.720 12 C 0.121 3.879 13 C -0.105 4.105 14 C -0.072 4.072 15 C -0.123 4.123 16 C 0.175 3.825 17 N -0.611 5.611 18 C -0.261 4.261 19 H 0.068 0.932 20 C -0.055 4.055 21 N -0.938 5.938 22 Si 0.967 3.033 23 H -0.264 1.264 24 H -0.291 1.291 25 H -0.292 1.292 26 C 0.136 3.864 27 C -0.112 4.112 28 C -0.111 4.111 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.061 0.939 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.417 0.583 39 H 0.047 0.953 40 H 0.050 0.950 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.057 0.943 46 H -0.011 1.011 47 H 0.048 0.952 48 H 0.249 0.751 49 H 0.009 0.991 50 H 0.053 0.947 51 H 0.086 0.914 52 H 0.058 0.942 53 H 0.084 0.916 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.821 20.701 1.883 31.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.100 0.900 4 C -0.160 4.160 5 C -0.151 4.151 6 C -0.097 4.097 7 H 0.072 0.928 8 C -0.165 4.165 9 C 0.288 3.712 10 O -0.467 6.467 11 N -0.373 5.373 12 C -0.003 4.003 13 C -0.143 4.143 14 C -0.091 4.091 15 C -0.162 4.162 16 C 0.049 3.951 17 N -0.335 5.335 18 C -0.391 4.391 19 H 0.086 0.914 20 C -0.250 4.250 21 N -0.585 5.585 22 Si 0.795 3.205 23 H -0.188 1.188 24 H -0.218 1.218 25 H -0.220 1.220 26 C 0.010 3.990 27 C -0.151 4.151 28 C -0.149 4.149 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.254 0.746 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.007 0.993 47 H 0.066 0.934 48 H 0.058 0.942 49 H 0.027 0.973 50 H 0.072 0.928 51 H 0.104 0.896 52 H 0.077 0.923 53 H 0.103 0.897 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.871 19.953 1.256 31.138 hybrid contribution 0.949 -1.303 0.236 1.629 sum -22.922 18.650 1.492 29.588 Atomic orbital electron populations 1.21803 0.94536 1.01709 1.02059 1.21976 0.95827 0.99322 0.94237 0.90034 1.22600 0.95526 0.99716 0.98137 1.22323 0.97102 1.00022 0.95698 1.21497 0.93984 0.99556 0.94639 0.92797 1.21901 0.90751 1.00899 1.02933 1.21497 0.85334 0.83615 0.80719 1.90704 1.85778 1.35996 1.34249 1.45993 1.08133 1.39852 1.43276 1.21272 0.85322 0.95044 0.98643 1.21688 0.91741 1.00559 1.00301 1.20906 0.94845 0.93900 0.99459 1.22082 0.97497 0.96367 1.00281 1.20580 0.84813 0.96264 0.93440 1.44351 1.20806 1.05950 1.62410 1.19593 1.16711 0.90680 1.12108 0.91412 1.25832 1.01345 0.99669 0.98195 1.70214 1.51894 1.11678 1.24688 0.85207 0.77366 0.78751 0.79146 1.18788 1.21805 1.21951 1.21126 0.96920 0.84130 0.96791 1.21892 0.94152 0.99076 0.99997 1.22284 0.95666 0.98856 0.98061 0.93084 0.92537 0.91882 0.92211 0.91419 0.94018 0.92005 0.86346 0.86479 0.74610 0.93440 0.93137 0.89004 0.90405 0.92509 0.92981 0.92457 0.99314 0.93368 0.94238 0.97294 0.92839 0.89561 0.92322 0.89723 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.12 71.98 0.66 -0.68 16 2 C -0.10 -1.03 3.46 -9.72 -0.03 -1.06 16 3 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 4 C -0.12 -1.77 6.33 31.88 0.20 -1.57 16 5 C -0.11 -2.10 5.36 31.67 0.17 -1.93 16 6 C -0.08 -1.24 2.56 -10.07 -0.03 -1.26 16 7 H 0.05 1.13 7.97 -2.39 -0.02 1.11 16 8 C -0.13 -1.58 4.83 29.85 0.14 -1.43 16 9 C 0.50 10.84 7.60 87.66 0.67 11.51 16 10 O -0.59 -18.87 14.75 -3.04 -0.04 -18.92 16 11 N -0.72 -13.03 5.56 -463.05 -2.57 -15.60 16 12 C 0.12 2.90 5.43 86.38 0.47 3.37 16 13 C -0.11 -2.21 4.80 30.60 0.15 -2.06 16 14 C -0.07 -2.17 2.15 -10.77 -0.02 -2.20 16 15 C -0.12 -4.69 5.14 30.67 0.16 -4.53 16 16 C 0.17 8.81 5.31 86.37 0.46 9.27 16 17 N -0.61 -31.52 2.99 -699.09 -2.09 -33.61 16 18 C -0.26 -14.69 9.59 84.03 0.81 -13.89 16 19 H 0.07 3.70 7.89 -2.91 -0.02 3.67 16 20 C -0.06 -3.19 4.91 84.86 0.42 -2.78 16 21 N -0.94 -57.61 11.19 21.65 0.24 -57.37 16 22 Si 0.97 45.90 29.59 68.60 2.03 47.93 16 23 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 26 C 0.14 5.61 6.52 86.36 0.56 6.18 16 27 C -0.11 -3.47 5.36 30.67 0.16 -3.30 16 28 C -0.11 -1.19 6.03 31.32 0.19 -1.01 16 29 H 0.05 0.52 8.11 -2.39 -0.02 0.50 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.06 0.93 8.06 -2.39 -0.02 0.91 16 33 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.04 1.03 7.60 -2.39 -0.02 1.01 16 35 H 0.06 1.09 7.79 -2.38 -0.02 1.07 16 36 H 0.12 0.92 8.04 -2.39 -0.02 0.90 16 37 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.42 4.34 8.47 -92.71 -0.79 3.56 16 39 H 0.05 1.38 6.54 -2.39 -0.02 1.37 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.06 2.07 6.50 -2.39 -0.02 2.06 16 46 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 47 H 0.05 2.77 6.04 -2.38 -0.01 2.75 16 48 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 49 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 50 H 0.05 2.16 7.93 -2.39 -0.02 2.14 16 51 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 52 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 53 H 0.08 0.60 7.67 -2.39 -0.02 0.58 16 54 H 0.07 0.73 7.81 -2.39 -0.02 0.71 16 Total: -1.00 -73.53 408.60 2.74 -70.79 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.05 Total: 14.16 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 5.13 Total: -7.38 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -4.42 Total: -106.58 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.04 Total: -18.92 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -73.53 2.74 -70.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698725063.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.592 kcal (2) G-P(sol) polarization free energy of solvation -73.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds