Wall clock time and date at job start Tue Mar 31 2020 15:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 110.01051 * 2 1 4 4 C 1.53872 * 110.07238 * 121.42230 * 2 1 3 5 5 C 1.54262 * 106.59878 * 119.31179 * 4 2 1 6 6 C 1.55236 * 104.23484 * 23.60494 * 5 4 2 7 7 H 1.09011 * 110.76567 * 80.31146 * 6 5 4 8 8 C 1.52994 * 110.90083 * 203.79444 * 6 5 4 9 9 C 1.50699 * 109.47091 * 288.21644 * 8 6 5 10 10 O 1.21277 * 120.00245 * 359.97438 * 9 8 6 11 11 N 1.34784 * 119.99707 * 180.02562 * 9 8 6 12 12 C 1.46500 * 119.99401 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.46690 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.46889 * 180.02562 * 13 12 11 15 15 C 1.53047 * 109.46003 * 295.06397 * 14 13 12 16 16 C 1.53194 * 109.31407 * 178.61616 * 15 14 13 17 17 N 1.46919 * 108.77313 * 54.63656 * 16 15 14 18 18 C 1.36940 * 120.62801 * 126.41029 * 17 16 15 19 19 H 1.08003 * 120.00232 * 207.65640 * 18 17 16 20 20 C 1.38810 * 119.99893 * 27.66967 * 18 17 16 21 21 N 1.31618 * 120.00306 * 17.36078 * 20 18 17 22 22 Si 1.86803 * 119.99801 * 197.36483 * 20 18 17 23 23 H 1.48497 * 109.47314 * 59.99389 * 22 20 18 24 24 H 1.48495 * 109.47316 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46925 * 299.99542 * 22 20 18 26 26 C 1.46922 * 118.74390 * 306.39225 * 17 16 15 27 27 C 1.53048 * 109.45970 * 175.00125 * 14 13 12 28 28 C 1.54271 * 110.03101 * 238.61420 * 2 1 3 29 29 H 1.09002 * 109.46779 * 181.38626 * 1 2 3 30 30 H 1.08997 * 109.47253 * 301.38500 * 1 2 3 31 31 H 1.09002 * 109.47346 * 61.39146 * 1 2 3 32 32 H 1.09002 * 110.02789 * 238.59121 * 4 2 1 33 33 H 1.08998 * 110.03259 * 0.02562 * 4 2 1 34 34 H 1.08998 * 110.48760 * 142.28302 * 5 4 2 35 35 H 1.09001 * 110.48570 * 264.93199 * 5 4 2 36 36 H 1.08991 * 109.47368 * 48.21808 * 8 6 5 37 37 H 1.09003 * 109.47012 * 168.21796 * 8 6 5 38 38 H 0.96994 * 120.00478 * 359.97438 * 11 9 8 39 39 H 1.08994 * 109.47866 * 299.99766 * 12 11 9 40 40 H 1.09003 * 109.46996 * 60.00247 * 12 11 9 41 41 H 1.08998 * 109.46897 * 300.00030 * 13 12 11 42 42 H 1.08990 * 109.46848 * 60.00210 * 13 12 11 43 43 H 1.08998 * 109.46564 * 55.02598 * 14 13 12 44 44 H 1.08997 * 109.49628 * 298.57280 * 15 14 13 45 45 H 1.09000 * 109.49435 * 58.66691 * 15 14 13 46 46 H 1.08998 * 109.58780 * 294.85057 * 16 15 14 47 47 H 1.08997 * 109.58557 * 174.42400 * 16 15 14 48 48 H 0.96994 * 119.99969 * 180.02562 * 21 20 18 49 49 H 1.09006 * 109.58591 * 293.82244 * 26 17 16 50 50 H 1.09001 * 109.71167 * 173.46881 * 26 17 16 51 51 H 1.08997 * 109.49531 * 301.33220 * 27 14 13 52 52 H 1.09000 * 109.49566 * 61.43182 * 27 14 13 53 53 H 1.08995 * 110.48513 * 335.72957 * 28 2 1 54 54 H 1.09001 * 110.48458 * 98.24129 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0582 -0.7535 1.2333 5 6 2.8892 -1.9398 0.7025 6 6 3.3159 -1.4992 -0.7235 7 1 4.1723 -0.8261 -0.6800 8 6 3.6232 -2.7141 -1.6011 9 6 4.9165 -3.3439 -1.1521 10 8 5.5322 -2.8676 -0.2221 11 7 5.3896 -4.4359 -1.7848 12 6 6.6472 -5.0478 -1.3486 13 6 6.9545 -6.2629 -2.2262 14 6 8.2675 -6.9023 -1.7702 15 6 9.4208 -5.9254 -2.0106 16 6 10.7287 -6.5552 -1.5212 17 7 10.8979 -7.8607 -2.1736 18 6 12.0488 -8.1566 -2.8543 19 1 12.0269 -8.8634 -3.6706 20 6 13.2436 -7.5482 -2.4948 21 7 13.3586 -6.9666 -1.3197 22 14 14.6883 -7.5549 -3.6790 23 1 14.3002 -6.8682 -4.9372 24 1 15.8373 -6.8448 -3.0622 25 1 15.0756 -8.9567 -3.9794 26 6 9.8092 -8.8430 -2.0815 27 6 8.5116 -8.1876 -2.5646 28 6 2.0585 -0.7548 -1.2373 29 1 -0.3633 -1.0274 0.0249 30 1 -0.3633 0.5352 0.8773 31 1 -0.3634 0.4921 -0.9022 32 1 2.6876 -0.0949 1.8319 33 1 1.2245 -1.1199 1.8323 34 1 3.7658 -2.1023 1.3295 35 1 2.2795 -2.8422 0.6561 36 1 2.8153 -3.4403 -1.5121 37 1 3.7146 -2.3979 -2.6403 38 1 4.8975 -4.8167 -2.5288 39 1 7.4549 -4.3214 -1.4376 40 1 6.5561 -5.3643 -0.3095 41 1 6.1467 -6.9893 -2.1366 42 1 7.0454 -5.9469 -3.2653 43 1 8.2070 -7.1381 -0.7078 44 1 9.4977 -5.7084 -3.0760 45 1 9.2349 -5.0013 -1.4632 46 1 10.6876 -6.6895 -0.4403 47 1 11.5657 -5.9065 -1.7794 48 1 14.1933 -6.5412 -1.0688 49 1 9.6931 -9.1638 -1.0463 50 1 10.0381 -9.7053 -2.7077 51 1 7.6785 -8.8736 -2.4114 52 1 8.5971 -7.9492 -3.6248 53 1 1.3147 -1.4658 -1.5968 54 1 2.3266 -0.0527 -2.0267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698725064.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:52 Heat of formation + Delta-G solvation = -80.728472 kcal Electronic energy + Delta-G solvation = -27220.895275 eV Core-core repulsion = 23576.259132 eV Total energy + Delta-G solvation = -3644.636143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.94631 -39.61921 -39.04276 -36.66376 -35.04683 -33.60551 -32.99700 -31.49103 -30.72216 -29.97218 -28.14367 -26.70930 -25.17286 -24.34548 -23.64035 -22.12083 -21.71597 -20.79589 -20.62670 -20.33278 -18.70442 -17.91596 -17.16367 -16.86941 -16.69360 -16.52260 -15.73774 -15.51325 -15.30595 -15.18055 -14.99863 -14.86025 -14.39922 -14.30699 -14.23277 -13.88579 -13.80527 -13.70763 -13.08040 -13.03305 -12.90385 -12.80520 -12.71650 -12.53410 -12.33109 -12.22375 -11.94562 -11.89603 -11.78637 -11.73203 -11.58492 -11.52482 -11.45380 -11.39569 -11.25866 -11.09248 -10.99017 -10.67578 -10.52451 -10.01238 -8.67727 -7.87113 -5.32498 1.45151 1.48060 1.54848 1.73485 2.28475 2.51002 3.26802 3.62500 3.68080 3.72196 3.82719 3.85317 3.95364 4.03025 4.16603 4.27435 4.31478 4.39852 4.44240 4.51442 4.57157 4.61427 4.69087 4.72694 4.73404 4.74098 4.78104 4.79431 4.85796 4.89699 4.92921 5.04025 5.04121 5.07658 5.12073 5.14982 5.18724 5.25645 5.30590 5.35368 5.37102 5.42047 5.44235 5.45460 5.52762 5.55633 5.56858 5.62387 5.66630 5.79352 6.38995 6.65786 7.14828 7.36899 7.87882 8.39364 9.18827 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.029173 B = 0.001817 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.562553 B =15408.904436 C =15785.907977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.065 0.935 4 C -0.122 4.122 5 C -0.117 4.117 6 C -0.079 4.079 7 H 0.057 0.943 8 C -0.124 4.124 9 C 0.501 3.499 10 O -0.588 6.588 11 N -0.720 5.720 12 C 0.121 3.879 13 C -0.105 4.105 14 C -0.072 4.072 15 C -0.123 4.123 16 C 0.175 3.825 17 N -0.611 5.611 18 C -0.263 4.263 19 H 0.068 0.932 20 C -0.055 4.055 21 N -0.938 5.938 22 Si 0.968 3.032 23 H -0.278 1.278 24 H -0.296 1.296 25 H -0.273 1.273 26 C 0.136 3.864 27 C -0.112 4.112 28 C -0.108 4.108 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.417 0.583 39 H 0.047 0.953 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.057 0.943 46 H -0.011 1.011 47 H 0.048 0.952 48 H 0.249 0.751 49 H 0.009 0.991 50 H 0.053 0.947 51 H 0.086 0.914 52 H 0.058 0.942 53 H 0.084 0.916 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.843 9.727 -2.896 31.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.084 0.916 4 C -0.159 4.159 5 C -0.155 4.155 6 C -0.098 4.098 7 H 0.076 0.924 8 C -0.163 4.163 9 C 0.289 3.711 10 O -0.469 6.469 11 N -0.372 5.372 12 C -0.003 4.003 13 C -0.143 4.143 14 C -0.091 4.091 15 C -0.162 4.162 16 C 0.049 3.951 17 N -0.335 5.335 18 C -0.394 4.394 19 H 0.086 0.914 20 C -0.250 4.250 21 N -0.584 5.584 22 Si 0.796 3.204 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.199 1.199 26 C 0.011 3.989 27 C -0.151 4.151 28 C -0.146 4.146 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.254 0.746 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.007 0.993 47 H 0.066 0.934 48 H 0.058 0.942 49 H 0.027 0.973 50 H 0.071 0.929 51 H 0.104 0.896 52 H 0.077 0.923 53 H 0.103 0.897 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -29.271 10.108 -2.175 31.043 hybrid contribution 1.586 -0.084 -0.135 1.594 sum -27.685 10.025 -2.310 29.534 Atomic orbital electron populations 1.21856 0.93981 1.02080 1.01905 1.21747 0.96435 0.99076 0.94527 0.91617 1.22230 0.99177 0.96790 0.97745 1.22426 0.98573 0.98248 0.96266 1.21905 0.97909 0.95577 0.94433 0.92443 1.21742 0.93877 0.98424 1.02307 1.21486 0.87869 0.79886 0.81839 1.90700 1.61517 1.63675 1.30958 1.45989 1.24719 1.29848 1.36675 1.21273 0.85696 0.95037 0.98288 1.21687 0.97115 0.95943 0.99545 1.20910 0.93643 0.95141 0.99417 1.22084 0.95904 0.97872 1.00379 1.20578 0.95178 0.86876 0.92453 1.44331 1.15093 1.11767 1.62300 1.19528 0.86375 1.24348 1.09118 0.91441 1.25833 0.99876 1.01938 0.97326 1.70202 1.26115 1.41971 1.20119 0.85331 0.78558 0.77964 0.78561 1.20371 1.22187 1.19879 1.21117 0.88705 0.91924 0.97200 1.21893 0.97214 0.96553 0.99462 1.22485 0.95984 0.99002 0.97086 0.92238 0.92804 0.92038 0.93081 0.91159 0.93983 0.91216 0.86255 0.86389 0.74586 0.93437 0.93132 0.88993 0.90409 0.92503 0.93009 0.92445 0.99307 0.93355 0.94225 0.97334 0.92853 0.89560 0.92336 0.89720 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.84 71.98 0.64 -0.64 16 2 C -0.10 -1.19 3.50 -10.07 -0.04 -1.23 16 3 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 4 C -0.12 -1.83 6.46 31.32 0.20 -1.63 16 5 C -0.12 -2.10 5.78 31.79 0.18 -1.91 16 6 C -0.08 -1.25 2.46 -9.38 -0.02 -1.28 16 7 H 0.06 1.23 7.88 -2.38 -0.02 1.21 16 8 C -0.12 -1.54 5.21 29.85 0.16 -1.39 16 9 C 0.50 10.84 7.67 87.66 0.67 11.51 16 10 O -0.59 -18.97 14.86 -3.02 -0.04 -19.01 16 11 N -0.72 -12.98 5.56 -463.05 -2.57 -15.56 16 12 C 0.12 2.90 5.43 86.38 0.47 3.36 16 13 C -0.11 -2.21 4.80 30.60 0.15 -2.06 16 14 C -0.07 -2.18 2.15 -10.76 -0.02 -2.20 16 15 C -0.12 -4.70 5.15 30.68 0.16 -4.54 16 16 C 0.17 8.82 5.31 86.36 0.46 9.28 16 17 N -0.61 -31.54 2.99 -699.11 -2.09 -33.63 16 18 C -0.26 -14.86 9.59 84.03 0.81 -14.06 16 19 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 20 C -0.05 -3.14 4.91 84.86 0.42 -2.73 16 21 N -0.94 -57.55 11.19 21.65 0.24 -57.31 16 22 Si 0.97 45.87 29.59 68.60 2.03 47.90 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 26 C 0.14 5.63 6.51 86.36 0.56 6.19 16 27 C -0.11 -3.47 5.36 30.67 0.16 -3.31 16 28 C -0.11 -1.16 5.80 31.67 0.18 -0.97 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.93 7.67 -2.39 -0.02 0.91 16 34 H 0.04 1.02 7.40 -2.39 -0.02 1.00 16 35 H 0.07 1.08 7.95 -2.39 -0.02 1.06 16 36 H 0.12 0.89 8.00 -2.39 -0.02 0.87 16 37 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.42 4.30 8.47 -92.71 -0.79 3.52 16 39 H 0.05 1.38 6.53 -2.39 -0.02 1.37 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.06 2.08 6.50 -2.39 -0.02 2.06 16 46 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 47 H 0.05 2.77 6.04 -2.39 -0.01 2.76 16 48 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 49 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 50 H 0.05 2.15 7.94 -2.39 -0.02 2.13 16 51 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 52 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 53 H 0.08 0.65 7.76 -2.39 -0.02 0.63 16 54 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -73.59 409.03 2.75 -70.84 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.05 Total: 14.36 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 5.13 Total: -7.60 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -4.42 Total: -106.50 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.04 Total: -19.01 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -73.59 2.75 -70.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698725064.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.884 kcal (2) G-P(sol) polarization free energy of solvation -73.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds