Wall clock time and date at job start Tue Mar 31 2020 15:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.53790 * 2 1 4 4 C 1.54889 * 110.48396 * 122.61157 * 2 1 3 5 5 C 1.54889 * 102.74746 * 156.62193 * 4 2 1 6 6 C 1.54269 * 104.19401 * 322.05734 * 5 4 2 7 7 H 1.08995 * 110.03148 * 264.32413 * 6 5 4 8 8 C 1.53004 * 110.03310 * 142.89483 * 6 5 4 9 9 C 1.50700 * 109.46940 * 66.45102 * 8 6 5 10 10 O 1.21280 * 120.00458 * 0.02562 * 9 8 6 11 11 N 1.34781 * 119.99891 * 180.02562 * 9 8 6 12 12 C 1.46497 * 120.00049 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47098 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.47254 * 179.97438 * 13 12 11 15 15 C 1.53048 * 109.46269 * 295.03070 * 14 13 12 16 16 C 1.53192 * 109.31264 * 178.59880 * 15 14 13 17 17 N 1.46925 * 108.76597 * 54.65550 * 16 15 14 18 18 C 1.36939 * 120.63200 * 126.40398 * 17 16 15 19 19 H 1.07998 * 119.99659 * 207.66116 * 18 17 16 20 20 C 1.38810 * 119.99581 * 27.65616 * 18 17 16 21 21 N 1.31615 * 120.00354 * 17.38365 * 20 18 17 22 22 Si 1.86800 * 119.99797 * 197.37628 * 20 18 17 23 23 H 1.48506 * 109.47123 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47066 * 120.00065 * 22 20 18 25 25 H 1.48498 * 109.47407 * 240.00430 * 22 20 18 26 26 C 1.46925 * 118.73636 * 306.38511 * 17 16 15 27 27 C 1.53037 * 109.46412 * 174.97506 * 14 13 12 28 28 C 1.53875 * 106.59999 * 23.60940 * 6 5 4 29 29 H 1.09002 * 109.47160 * 298.84098 * 1 2 3 30 30 H 1.08995 * 109.47154 * 58.84232 * 1 2 3 31 31 H 1.09005 * 109.47385 * 178.84454 * 1 2 3 32 32 H 1.08995 * 110.75884 * 38.30761 * 4 2 1 33 33 H 1.08996 * 110.75781 * 274.93382 * 4 2 1 34 34 H 1.08996 * 110.48601 * 203.37798 * 5 4 2 35 35 H 1.08998 * 110.59856 * 80.78542 * 5 4 2 36 36 H 1.09000 * 109.47323 * 186.45339 * 8 6 5 37 37 H 1.09002 * 109.46774 * 306.45214 * 8 6 5 38 38 H 0.97006 * 119.99566 * 0.02562 * 11 9 8 39 39 H 1.09001 * 109.46926 * 299.99454 * 12 11 9 40 40 H 1.09000 * 109.46898 * 59.99907 * 12 11 9 41 41 H 1.09000 * 109.47323 * 300.00031 * 13 12 11 42 42 H 1.09002 * 109.46774 * 59.99906 * 13 12 11 43 43 H 1.08998 * 109.45859 * 54.99746 * 14 13 12 44 44 H 1.08998 * 109.49319 * 298.56428 * 15 14 13 45 45 H 1.09008 * 109.49553 * 58.65927 * 15 14 13 46 46 H 1.09001 * 109.59676 * 294.86702 * 16 15 14 47 47 H 1.09003 * 109.58432 * 174.43684 * 16 15 14 48 48 H 0.96999 * 120.00468 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.58705 * 293.81792 * 26 17 16 50 50 H 1.09004 * 109.58868 * 173.39843 * 26 17 16 51 51 H 1.09001 * 109.49185 * 301.33872 * 27 14 13 52 52 H 1.08997 * 109.49927 * 61.39931 * 27 14 13 53 53 H 1.09005 * 110.03149 * 119.28250 * 28 6 5 54 54 H 1.08996 * 110.03282 * 240.71296 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0720 -0.7820 1.2222 5 6 3.4907 -1.1979 0.7601 6 6 3.3165 -1.5405 -0.7340 7 1 3.1692 -2.6135 -0.8563 8 6 4.5465 -1.0865 -1.5227 9 6 5.7420 -1.9019 -1.1020 10 8 5.6220 -2.7618 -0.2553 11 7 6.9446 -1.6756 -1.6669 12 6 8.1067 -2.4686 -1.2584 13 6 9.3367 -2.0145 -2.0470 14 6 10.5505 -2.8423 -1.6200 15 6 10.8775 -2.5490 -0.1539 16 6 12.0713 -3.4054 0.2800 17 7 13.1863 -3.1659 -0.6463 18 6 14.4178 -2.7964 -0.1750 19 1 15.0787 -2.2083 -0.7944 20 6 14.8165 -3.1777 1.0987 21 7 14.1909 -4.1555 1.7190 22 14 16.2411 -2.3032 1.9325 23 1 16.7703 -1.2485 1.0309 24 1 15.7694 -1.6824 3.1963 25 1 17.3157 -3.2829 2.2331 26 6 12.9550 -3.3309 -2.0878 27 6 11.7512 -2.4757 -2.4951 28 6 2.0699 -0.7789 -1.2172 29 1 -0.3633 0.4957 0.9002 30 1 -0.3633 0.5317 -0.8794 31 1 -0.3634 -1.0275 -0.0207 32 1 1.4580 -1.6600 1.4223 33 1 2.1251 -0.1382 2.1001 34 1 3.8315 -2.0721 1.3147 35 1 4.1915 -0.3722 0.8829 36 1 4.3672 -1.2277 -2.5885 37 1 4.7373 -0.0321 -1.3228 38 1 7.0406 -0.9875 -2.3439 39 1 8.2859 -2.3281 -0.1925 40 1 7.9157 -3.5229 -1.4590 41 1 9.1573 -2.1553 -3.1129 42 1 9.5277 -0.9602 -1.8468 43 1 10.3262 -3.9025 -1.7368 44 1 11.1262 -1.4938 -0.0408 45 1 10.0137 -2.7882 0.4664 46 1 11.7940 -4.4592 0.2535 47 1 12.3705 -3.1294 1.2912 48 1 14.4692 -4.4218 2.6093 49 1 12.7499 -4.3787 -2.3074 50 1 13.8374 -3.0059 -2.6391 51 1 11.5093 -2.6627 -3.5414 52 1 11.9912 -1.4211 -2.3602 53 1 2.3412 -0.0857 -2.0136 54 1 1.3176 -1.4822 -1.5741 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698725065.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:57 Heat of formation + Delta-G solvation = -80.383432 kcal Electronic energy + Delta-G solvation = -27284.791776 eV Core-core repulsion = 23640.170595 eV Total energy + Delta-G solvation = -3644.621181 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.99338 -39.63147 -39.02329 -36.66451 -35.05101 -33.58751 -33.00425 -31.49362 -30.77015 -29.98856 -28.09104 -26.69815 -25.15662 -24.33530 -23.63722 -22.12347 -21.69519 -21.06436 -20.58991 -20.19565 -18.71017 -18.05736 -17.12692 -16.81602 -16.67525 -16.13352 -15.99353 -15.67308 -15.31286 -15.29472 -14.91821 -14.57591 -14.49172 -14.39689 -14.14300 -13.92958 -13.83655 -13.72641 -13.23237 -13.04885 -12.93475 -12.71961 -12.59836 -12.57061 -12.33357 -12.15874 -11.97443 -11.89278 -11.78552 -11.66870 -11.60951 -11.52924 -11.52514 -11.42692 -11.22053 -11.09070 -10.99577 -10.66302 -10.54422 -10.01329 -8.68304 -7.87687 -5.33011 1.44283 1.45868 1.56800 1.73311 2.28578 2.50373 3.26405 3.64034 3.68517 3.71959 3.80316 3.85089 3.95079 4.03544 4.16939 4.22844 4.32688 4.36508 4.44199 4.57169 4.57852 4.62250 4.67715 4.69560 4.73812 4.75951 4.78819 4.81058 4.82688 4.89307 4.97987 5.03125 5.03998 5.08315 5.11837 5.14167 5.20739 5.23853 5.30365 5.35089 5.37488 5.40711 5.42046 5.45152 5.53231 5.56641 5.58671 5.61081 5.66533 5.79061 6.38712 6.65424 7.14352 7.36612 7.87360 8.38793 9.18525 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.001902 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.992752 B =14714.037622 C =15433.864522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.079 0.921 4 C -0.122 4.122 5 C -0.115 4.115 6 C -0.077 4.077 7 H 0.056 0.944 8 C -0.126 4.126 9 C 0.500 3.500 10 O -0.587 6.587 11 N -0.720 5.720 12 C 0.121 3.879 13 C -0.105 4.105 14 C -0.072 4.072 15 C -0.123 4.123 16 C 0.175 3.825 17 N -0.611 5.611 18 C -0.260 4.260 19 H 0.068 0.932 20 C -0.056 4.056 21 N -0.938 5.938 22 Si 0.967 3.033 23 H -0.264 1.264 24 H -0.291 1.291 25 H -0.292 1.292 26 C 0.136 3.864 27 C -0.112 4.112 28 C -0.111 4.111 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.417 0.583 39 H 0.047 0.953 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.057 0.943 46 H -0.011 1.011 47 H 0.048 0.952 48 H 0.249 0.751 49 H 0.009 0.991 50 H 0.053 0.947 51 H 0.086 0.914 52 H 0.058 0.942 53 H 0.084 0.916 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.591 11.857 -11.213 31.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.098 0.902 4 C -0.160 4.160 5 C -0.153 4.153 6 C -0.096 4.096 7 H 0.075 0.925 8 C -0.165 4.165 9 C 0.288 3.712 10 O -0.467 6.467 11 N -0.373 5.373 12 C -0.003 4.003 13 C -0.143 4.143 14 C -0.091 4.091 15 C -0.162 4.162 16 C 0.049 3.951 17 N -0.335 5.335 18 C -0.391 4.391 19 H 0.086 0.914 20 C -0.251 4.251 21 N -0.585 5.585 22 Si 0.795 3.205 23 H -0.188 1.188 24 H -0.218 1.218 25 H -0.219 1.219 26 C 0.010 3.990 27 C -0.151 4.151 28 C -0.148 4.148 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.254 0.746 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.007 0.993 47 H 0.066 0.934 48 H 0.058 0.942 49 H 0.027 0.973 50 H 0.072 0.928 51 H 0.104 0.896 52 H 0.077 0.923 53 H 0.103 0.897 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -26.614 11.190 -10.501 30.721 hybrid contribution 1.309 -0.181 0.949 1.626 sum -25.306 11.008 -9.552 29.203 Atomic orbital electron populations 1.21796 0.94441 1.01773 1.02041 1.21979 0.95891 0.99275 0.94289 0.90220 1.22599 0.95504 0.99736 0.98135 1.22337 0.97083 0.99964 0.95936 1.21496 0.93979 0.99677 0.94433 0.92531 1.21904 0.90756 1.00757 1.03081 1.21500 0.85355 0.83645 0.80667 1.90703 1.85817 1.36008 1.34194 1.45995 1.08083 1.39782 1.43402 1.21272 0.85201 0.95003 0.98805 1.21687 0.91598 1.00404 1.00599 1.20907 0.94626 0.99289 0.94288 1.22081 0.97424 0.99751 0.96953 1.20581 0.86429 0.93942 0.94157 1.44353 1.07260 1.80326 1.01579 1.19592 0.94240 1.25527 0.99702 0.91407 1.25832 1.01229 0.97652 1.00362 1.70212 1.45024 1.28873 1.14364 0.85207 0.78830 0.78160 0.78276 1.18794 1.21805 1.21948 1.21124 0.97138 0.96214 0.84486 1.21889 0.94354 0.99758 0.99116 1.22283 0.95674 0.98874 0.97969 0.92642 0.91829 0.92949 0.92031 0.91629 0.94024 0.92301 0.86176 0.86648 0.74612 0.93460 0.93115 0.88984 0.90434 0.92500 0.92994 0.92471 0.99298 0.93368 0.94238 0.97288 0.92837 0.89561 0.92330 0.89715 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.12 71.98 0.66 -0.70 16 2 C -0.10 -1.07 3.46 -9.72 -0.03 -1.11 16 3 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 4 C -0.12 -1.85 6.33 31.89 0.20 -1.65 16 5 C -0.12 -2.22 5.36 31.67 0.17 -2.05 16 6 C -0.08 -1.22 2.56 -10.07 -0.03 -1.24 16 7 H 0.06 1.15 7.97 -2.39 -0.02 1.13 16 8 C -0.13 -1.58 4.83 29.85 0.14 -1.43 16 9 C 0.50 10.84 7.60 87.66 0.67 11.51 16 10 O -0.59 -18.87 14.75 -3.03 -0.04 -18.91 16 11 N -0.72 -13.04 5.56 -463.05 -2.57 -15.61 16 12 C 0.12 2.90 5.43 86.38 0.47 3.37 16 13 C -0.11 -2.21 4.80 30.59 0.15 -2.07 16 14 C -0.07 -2.17 2.15 -10.77 -0.02 -2.20 16 15 C -0.12 -4.69 5.15 30.67 0.16 -4.53 16 16 C 0.17 8.81 5.31 86.36 0.46 9.27 16 17 N -0.61 -31.52 2.99 -699.11 -2.09 -33.61 16 18 C -0.26 -14.68 9.59 84.03 0.81 -13.87 16 19 H 0.07 3.70 7.89 -2.91 -0.02 3.68 16 20 C -0.06 -3.21 4.91 84.86 0.42 -2.80 16 21 N -0.94 -57.62 11.19 21.65 0.24 -57.38 16 22 Si 0.97 45.92 29.59 68.60 2.03 47.95 16 23 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 26 C 0.14 5.61 6.51 86.36 0.56 6.18 16 27 C -0.11 -3.47 5.36 30.67 0.16 -3.30 16 28 C -0.11 -1.17 6.03 31.32 0.19 -0.98 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.53 8.11 -2.38 -0.02 0.51 16 32 H 0.06 0.98 8.06 -2.39 -0.02 0.96 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.04 1.06 7.60 -2.39 -0.02 1.04 16 35 H 0.06 1.12 7.78 -2.39 -0.02 1.10 16 36 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.12 0.97 8.04 -2.39 -0.02 0.96 16 38 H 0.42 4.35 8.47 -92.70 -0.79 3.56 16 39 H 0.05 1.38 6.53 -2.39 -0.02 1.36 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.06 2.07 6.50 -2.38 -0.02 2.05 16 46 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 47 H 0.05 2.77 6.04 -2.39 -0.01 2.75 16 48 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 49 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 50 H 0.05 2.16 7.93 -2.38 -0.02 2.14 16 51 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 52 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 53 H 0.08 0.59 7.67 -2.38 -0.02 0.57 16 54 H 0.07 0.71 7.81 -2.39 -0.02 0.69 16 Total: -1.00 -73.55 408.59 2.74 -70.81 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.05 Total: 14.36 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 5.13 Total: -7.60 kcal Atomic # 7 Polarization: -102.18 SS G_CDS: -4.42 Total: -106.61 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.04 Total: -18.91 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -73.55 2.74 -70.81 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698725065.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.574 kcal (2) G-P(sol) polarization free energy of solvation -73.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds