Wall clock time and date at job start Tue Mar 31 2020 15:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.66955 * 2 1 4 4 C 1.54892 * 110.75419 * 236.76915 * 2 1 3 5 5 C 1.54269 * 104.19243 * 203.55365 * 4 2 1 6 6 C 1.53879 * 106.60025 * 23.61107 * 5 4 2 7 7 H 1.08995 * 110.03291 * 240.71551 * 6 5 4 8 8 C 1.53004 * 110.03144 * 119.32716 * 6 5 4 9 9 C 1.50707 * 109.46852 * 67.09659 * 8 6 5 10 10 O 1.21280 * 119.99648 * 359.97438 * 9 8 6 11 11 N 1.34771 * 119.99766 * 179.97438 * 9 8 6 12 12 C 1.46496 * 119.99822 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47197 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47337 * 180.02562 * 13 12 11 15 15 C 1.53044 * 109.45864 * 295.02520 * 14 13 12 16 16 C 1.53197 * 109.31151 * 178.60017 * 15 14 13 17 17 N 1.46927 * 108.76383 * 54.65857 * 16 15 14 18 18 C 1.36938 * 120.63088 * 126.40683 * 17 16 15 19 19 H 1.08001 * 119.99582 * 331.82395 * 18 17 16 20 20 C 1.38811 * 120.00024 * 151.82371 * 18 17 16 21 21 N 1.31620 * 120.00033 * 343.06973 * 20 18 17 22 22 Si 1.86799 * 119.99890 * 163.06754 * 20 18 17 23 23 H 1.48498 * 109.46981 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47029 * 119.99958 * 22 20 18 25 25 H 1.48504 * 109.47074 * 239.99970 * 22 20 18 26 26 C 1.46927 * 118.73792 * 306.37947 * 17 16 15 27 27 C 1.53042 * 109.46304 * 174.97012 * 14 13 12 28 28 C 1.54269 * 106.59706 * 0.02562 * 6 5 4 29 29 H 1.08998 * 109.47027 * 181.78309 * 1 2 3 30 30 H 1.09003 * 109.47118 * 301.77835 * 1 2 3 31 31 H 1.08997 * 109.47464 * 61.77945 * 1 2 3 32 32 H 1.08994 * 110.48810 * 84.87951 * 4 2 1 33 33 H 1.08998 * 110.59828 * 322.28834 * 4 2 1 34 34 H 1.09000 * 110.03694 * 264.32127 * 5 4 2 35 35 H 1.09006 * 110.06850 * 142.91470 * 5 4 2 36 36 H 1.09005 * 109.46951 * 187.08972 * 8 6 5 37 37 H 1.08995 * 109.47414 * 307.09156 * 8 6 5 38 38 H 0.97003 * 120.00404 * 0.02562 * 11 9 8 39 39 H 1.09004 * 109.47847 * 300.00214 * 12 11 9 40 40 H 1.08995 * 109.47142 * 60.00296 * 12 11 9 41 41 H 1.09005 * 109.46995 * 299.99946 * 13 12 11 42 42 H 1.08997 * 109.47553 * 60.00175 * 13 12 11 43 43 H 1.08996 * 109.46183 * 54.99623 * 14 13 12 44 44 H 1.08994 * 109.49624 * 298.56469 * 15 14 13 45 45 H 1.09002 * 109.49651 * 58.66573 * 15 14 13 46 46 H 1.09003 * 109.59745 * 294.86895 * 16 15 14 47 47 H 1.09002 * 109.69992 * 174.50788 * 16 15 14 48 48 H 0.96994 * 120.00047 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.58727 * 293.82502 * 26 17 16 50 50 H 1.08998 * 109.70285 * 173.46950 * 26 17 16 51 51 H 1.08992 * 109.49897 * 301.34115 * 27 14 13 52 52 H 1.09010 * 109.49362 * 61.40036 * 27 14 13 53 53 H 1.08997 * 110.48917 * 95.06781 * 28 6 5 54 54 H 1.09003 * 110.48249 * 217.71370 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0789 -0.7937 -1.2116 5 6 3.4949 -1.2213 -0.7735 6 6 3.4975 -1.2223 0.7653 7 1 4.2358 -0.5122 1.1379 8 6 3.8103 -2.6259 1.2879 9 6 5.2309 -2.9872 0.9378 10 8 5.9246 -2.1998 0.3297 11 7 5.7303 -4.1853 1.3004 12 6 7.1111 -4.5368 0.9596 13 6 7.4239 -5.9403 1.4823 14 6 8.8661 -6.3072 1.1269 15 6 9.0086 -6.3998 -0.3941 16 6 10.4616 -6.7328 -0.7474 17 7 10.8549 -7.9529 -0.0294 18 6 11.3803 -9.0216 -0.7054 19 1 11.1122 -9.1924 -1.7376 20 6 12.2575 -9.8853 -0.0641 21 7 12.8441 -9.5164 1.0549 22 14 12.6055 -11.5713 -0.7892 23 1 11.8271 -11.7414 -2.0423 24 1 14.0551 -11.6923 -1.0873 25 1 12.2112 -12.6202 0.1853 26 6 10.6742 -8.0042 1.4278 27 6 9.2191 -7.6566 1.7568 28 6 2.0828 -0.7960 1.2086 29 1 -0.3633 -1.0271 0.0320 30 1 -0.3633 0.5412 0.8736 31 1 -0.3634 0.4859 -0.9055 32 1 2.1288 -0.1563 -2.0943 33 1 1.4600 -1.6690 -1.4087 34 1 4.2320 -0.5108 -1.1477 35 1 3.7165 -2.2207 -1.1479 36 1 3.6866 -2.6463 2.3707 37 1 3.1295 -3.3439 0.8308 38 1 5.1754 -4.8152 1.7864 39 1 7.2345 -4.5169 -0.1233 40 1 7.7921 -3.8186 1.4161 41 1 7.3006 -5.9606 2.5651 42 1 6.7430 -6.6584 1.0255 43 1 9.5405 -5.5407 1.5088 44 1 8.3529 -7.1832 -0.7738 45 1 8.7346 -5.4454 -0.8439 46 1 11.1088 -5.9082 -0.4486 47 1 10.5504 -6.8962 -1.8215 48 1 13.4573 -10.1198 1.5029 49 1 11.3388 -7.2833 1.9040 50 1 10.9017 -9.0064 1.7912 51 1 9.0947 -7.5970 2.8380 52 1 8.5608 -8.4280 1.3569 53 1 1.4642 -1.6718 1.4045 54 1 2.1354 -0.1596 2.0920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698725066.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:01 Heat of formation + Delta-G solvation = -80.464105 kcal Electronic energy + Delta-G solvation = -27210.162816 eV Core-core repulsion = 23565.538137 eV Total energy + Delta-G solvation = -3644.624679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.99790 -39.63092 -39.00602 -36.66621 -35.03685 -33.57366 -32.98276 -31.61574 -30.68024 -29.93257 -28.15323 -26.71162 -25.16318 -24.39650 -23.56148 -22.14989 -21.67586 -20.87652 -20.65842 -20.25888 -18.70603 -17.84556 -17.25852 -16.86811 -16.77202 -16.44922 -15.73664 -15.42880 -15.30252 -15.22500 -14.93802 -14.89783 -14.50379 -14.37464 -14.10334 -13.93880 -13.80227 -13.60181 -13.14497 -13.00102 -12.92938 -12.82752 -12.73732 -12.57820 -12.23850 -12.13542 -11.96959 -11.92275 -11.81783 -11.75498 -11.54764 -11.51282 -11.47416 -11.34900 -11.28835 -11.10431 -10.99163 -10.68933 -10.53745 -10.00732 -8.67145 -7.87597 -5.33380 1.45044 1.46448 1.57551 1.73438 2.28917 2.50709 3.26435 3.63632 3.68384 3.71725 3.79809 3.85625 3.92907 4.04076 4.15732 4.25779 4.32532 4.37404 4.44601 4.50418 4.58245 4.64167 4.66762 4.73402 4.74352 4.75948 4.78194 4.80308 4.86421 4.89434 4.91413 5.02693 5.03626 5.07564 5.11669 5.16975 5.20205 5.24231 5.26874 5.35791 5.40129 5.40399 5.45470 5.46716 5.50725 5.55115 5.56624 5.62721 5.67012 5.80694 6.39371 6.65113 7.15242 7.35822 7.87086 8.38885 9.18570 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.037174 B = 0.001751 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.038035 B =15986.401742 C =16224.314573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.067 0.933 4 C -0.120 4.120 5 C -0.111 4.111 6 C -0.077 4.077 7 H 0.056 0.944 8 C -0.126 4.126 9 C 0.502 3.498 10 O -0.586 6.586 11 N -0.721 5.721 12 C 0.123 3.877 13 C -0.107 4.107 14 C -0.071 4.071 15 C -0.116 4.116 16 C 0.137 3.863 17 N -0.611 5.611 18 C -0.263 4.263 19 H 0.064 0.936 20 C -0.052 4.052 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.267 1.267 24 H -0.293 1.293 25 H -0.288 1.288 26 C 0.174 3.826 27 C -0.120 4.120 28 C -0.109 4.109 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.049 0.951 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.416 0.584 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.007 0.993 47 H 0.048 0.952 48 H 0.250 0.750 49 H -0.009 1.009 50 H 0.051 0.949 51 H 0.070 0.930 52 H 0.053 0.947 53 H 0.084 0.916 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.736 15.600 3.253 31.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.086 0.914 4 C -0.157 4.157 5 C -0.149 4.149 6 C -0.096 4.096 7 H 0.075 0.925 8 C -0.166 4.166 9 C 0.290 3.710 10 O -0.466 6.466 11 N -0.374 5.374 12 C -0.001 4.001 13 C -0.144 4.144 14 C -0.090 4.090 15 C -0.155 4.155 16 C 0.012 3.988 17 N -0.335 5.335 18 C -0.393 4.393 19 H 0.082 0.918 20 C -0.247 4.247 21 N -0.582 5.582 22 Si 0.796 3.204 23 H -0.191 1.191 24 H -0.220 1.220 25 H -0.214 1.214 26 C 0.048 3.952 27 C -0.159 4.159 28 C -0.146 4.146 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.253 0.747 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.025 0.975 47 H 0.067 0.933 48 H 0.059 0.941 49 H 0.009 0.991 50 H 0.070 0.930 51 H 0.089 0.911 52 H 0.072 0.928 53 H 0.103 0.897 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -27.125 16.063 2.891 31.657 hybrid contribution 1.143 -1.134 -0.236 1.627 sum -25.983 14.929 2.655 30.084 Atomic orbital electron populations 1.21733 0.93940 1.02248 1.01877 1.22108 0.96095 0.98808 0.94777 0.91421 1.22462 0.95392 0.99983 0.97875 1.22068 0.96832 1.00386 0.95579 1.21502 0.97730 0.95221 0.95164 0.92502 1.21870 0.91337 0.98696 1.04678 1.21441 0.90673 0.80949 0.77965 1.90701 1.62520 1.51006 1.42358 1.46016 1.14393 1.18064 1.58907 1.21273 0.82666 0.96238 0.99918 1.21685 0.95924 0.94731 1.02107 1.20890 0.96240 0.96659 0.95236 1.21960 0.96633 1.00765 0.96162 1.21077 0.94322 0.87904 0.95507 1.44344 1.72770 1.12736 1.03638 1.19561 1.19672 1.03062 0.97033 0.91828 1.25815 0.96663 1.03387 0.98867 1.70201 1.30974 1.36123 1.20947 0.85203 0.77113 0.80071 0.78041 1.19144 1.21976 1.21410 1.20617 0.92282 0.98969 0.83308 1.22014 0.97313 0.96820 0.99747 1.22491 0.94020 1.00400 0.97683 0.92074 0.92155 0.92725 0.92227 0.90891 0.94032 0.93238 0.86377 0.86677 0.74711 0.92661 0.93069 0.89776 0.90352 0.92483 0.92455 0.90968 0.97476 0.93337 0.94119 0.99106 0.93020 0.91127 0.92804 0.89725 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.28 71.98 0.67 -0.51 16 2 C -0.10 -1.11 3.49 -9.49 -0.03 -1.14 16 3 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 4 C -0.12 -1.60 6.27 31.67 0.20 -1.40 16 5 C -0.11 -2.00 5.37 31.32 0.17 -1.83 16 6 C -0.08 -1.16 2.55 -10.07 -0.03 -1.19 16 7 H 0.06 1.11 7.95 -2.39 -0.02 1.09 16 8 C -0.13 -1.51 4.85 29.85 0.14 -1.37 16 9 C 0.50 10.31 7.37 87.66 0.65 10.96 16 10 O -0.59 -17.82 15.10 -3.03 -0.05 -17.87 16 11 N -0.72 -12.45 5.56 -463.07 -2.57 -15.02 16 12 C 0.12 2.75 5.43 86.38 0.47 3.22 16 13 C -0.11 -2.26 4.80 30.59 0.15 -2.12 16 14 C -0.07 -2.16 2.15 -10.77 -0.02 -2.18 16 15 C -0.12 -3.88 5.14 30.67 0.16 -3.72 16 16 C 0.14 5.93 6.52 86.36 0.56 6.49 16 17 N -0.61 -31.57 2.99 -699.08 -2.09 -33.67 16 18 C -0.26 -14.86 9.58 84.03 0.81 -14.06 16 19 H 0.06 3.52 7.89 -2.91 -0.02 3.50 16 20 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 21 N -0.94 -56.43 11.19 21.65 0.24 -56.19 16 22 Si 0.97 45.50 29.59 68.60 2.03 47.53 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 25 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 26 C 0.17 8.49 5.30 86.36 0.46 8.95 16 27 C -0.12 -4.30 5.36 30.67 0.16 -4.13 16 28 C -0.11 -1.09 5.81 31.68 0.18 -0.90 16 29 H 0.06 0.45 8.13 -2.39 -0.02 0.43 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.85 8.05 -2.39 -0.02 0.83 16 34 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 0.98 7.36 -2.38 -0.02 0.96 16 36 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.42 4.26 8.47 -92.71 -0.79 3.48 16 39 H 0.06 1.42 6.54 -2.38 -0.02 1.41 16 40 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.07 2.12 6.50 -2.39 -0.02 2.11 16 46 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 47 H 0.05 2.07 7.93 -2.39 -0.02 2.06 16 48 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 49 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 50 H 0.05 2.86 6.07 -2.39 -0.01 2.84 16 51 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 52 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 53 H 0.08 0.60 7.76 -2.39 -0.02 0.58 16 54 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -71.70 409.30 2.72 -68.98 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.05 Total: 13.72 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 5.11 Total: -7.48 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -4.42 Total: -104.88 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.05 Total: -17.87 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -71.70 2.72 -68.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698725066.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.483 kcal (2) G-P(sol) polarization free energy of solvation -71.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds