Wall clock time and date at job start Tue Mar 31 2020 15:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.49964 * 2 1 4 4 C 1.53044 * 109.49928 * 239.93766 * 2 1 3 5 5 C 1.53042 * 109.53901 * 301.38453 * 4 2 1 6 6 C 1.53194 * 109.30960 * 298.63294 * 5 4 2 7 7 N 1.46924 * 108.77525 * 54.63475 * 6 5 4 8 8 C 1.34779 * 120.63119 * 126.41545 * 7 6 5 9 9 O 1.21279 * 120.00251 * 174.86567 * 8 7 6 10 10 C 1.50703 * 119.99871 * 354.86381 * 8 7 6 11 11 C 1.52996 * 109.46952 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47613 * 295.00140 * 11 10 8 13 13 C 1.52997 * 109.47255 * 179.97438 * 12 11 10 14 14 C 1.53005 * 109.47240 * 60.00284 * 13 12 11 15 15 C 1.52996 * 109.46765 * 300.00016 * 14 13 12 16 16 C 1.52996 * 109.47613 * 59.99880 * 15 14 13 17 17 C 1.46929 * 118.74054 * 306.38705 * 7 6 5 18 18 H 1.08997 * 109.58541 * 293.82820 * 17 7 6 19 19 C 1.52997 * 109.58760 * 173.39663 * 17 7 6 20 20 N 1.46499 * 109.46753 * 73.32072 * 19 17 7 21 21 C 1.36945 * 120.00026 * 174.76830 * 20 19 17 22 22 H 1.08006 * 119.99487 * 0.02562 * 21 20 19 23 23 C 1.38808 * 120.00011 * 180.02562 * 21 20 19 24 24 N 1.31618 * 120.00105 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99603 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46969 * 60.00681 * 25 23 21 27 27 H 1.48508 * 109.46850 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47403 * 300.00054 * 25 23 21 29 29 H 1.08995 * 109.47637 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47100 * 299.99942 * 1 2 3 31 31 H 1.09005 * 109.47207 * 59.99193 * 1 2 3 32 32 H 1.09007 * 109.45434 * 61.40368 * 4 2 1 33 33 H 1.08996 * 109.46518 * 181.36953 * 4 2 1 34 34 H 1.09006 * 109.49200 * 58.58062 * 5 4 2 35 35 H 1.08997 * 109.50008 * 178.67709 * 5 4 2 36 36 H 1.08997 * 109.58474 * 174.41958 * 6 5 4 37 37 H 1.08995 * 109.58516 * 294.70090 * 6 5 4 38 38 H 1.08998 * 109.46960 * 300.00504 * 10 8 7 39 39 H 1.08998 * 109.46799 * 60.00032 * 10 8 7 40 40 H 1.08997 * 109.46926 * 55.00416 * 11 10 8 41 41 H 1.09003 * 109.46828 * 300.00300 * 12 11 10 42 42 H 1.08998 * 109.47102 * 60.00041 * 12 11 10 43 43 H 1.08997 * 109.47197 * 300.00222 * 13 12 11 44 44 H 1.09006 * 109.47221 * 179.97438 * 13 12 11 45 45 H 1.08994 * 109.47070 * 179.97438 * 14 13 12 46 46 H 1.09003 * 109.47105 * 59.99426 * 14 13 12 47 47 H 1.08997 * 109.47200 * 299.99772 * 15 14 13 48 48 H 1.08998 * 109.47102 * 179.97438 * 15 14 13 49 49 H 1.08997 * 109.47771 * 180.02562 * 16 15 14 50 50 H 1.09003 * 109.47268 * 59.99970 * 16 15 14 51 51 H 1.08995 * 109.47065 * 193.31840 * 19 17 7 52 52 H 1.09003 * 109.47509 * 313.32576 * 19 17 7 53 53 H 0.96999 * 120.00718 * 354.77699 * 20 19 17 54 54 H 0.97001 * 119.99753 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 -1.2486 5 6 1.5036 -2.1556 -1.2664 6 6 2.0153 -2.9038 -0.0314 7 7 1.6527 -2.1383 1.1692 8 6 0.9765 -2.7226 2.1780 9 8 0.7644 -2.1082 3.2019 10 6 0.4840 -4.1396 2.0337 11 6 -0.2457 -4.5584 3.3116 12 6 0.7449 -4.5909 4.4772 13 6 0.0150 -5.0092 5.7552 14 6 -0.5927 -6.4002 5.5635 15 6 -1.5832 -6.3677 4.3979 16 6 -0.8535 -5.9494 3.1199 17 6 2.0420 -0.7238 1.2493 18 1 3.1281 -0.6458 1.2974 19 6 1.4236 -0.0916 2.4978 20 7 2.1294 -0.5712 3.6886 21 6 1.8210 -0.0584 4.9204 22 1 1.0571 0.6994 5.0140 23 6 2.4902 -0.5125 6.0486 24 7 3.4214 -1.4356 5.9344 25 14 2.0689 0.1867 7.7289 26 1 0.6388 -0.0762 8.0300 27 1 2.9194 -0.4590 8.7610 28 1 2.3143 1.6512 7.7314 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 1.6982 -0.1953 -2.1390 33 1 3.1304 -0.7437 -1.2358 34 1 0.4138 -2.1357 -1.2541 35 1 1.8485 -2.6624 -2.1676 36 1 1.5571 -3.8918 0.0131 37 1 3.0989 -3.0058 -0.0889 38 1 -0.1999 -4.2021 1.1873 39 1 1.3318 -4.8036 1.8656 40 1 -1.0385 -3.8426 3.5285 41 1 1.5378 -5.3067 4.2603 42 1 1.1775 -3.5999 4.6141 43 1 -0.7776 -4.2931 5.9719 44 1 0.7208 -5.0328 6.5856 45 1 -1.1123 -6.6983 6.4741 46 1 0.2000 -7.1163 5.3468 47 1 -2.3759 -5.6516 4.6146 48 1 -2.0159 -7.3587 4.2610 49 1 -1.5592 -5.9258 2.2896 50 1 -0.0608 -6.6655 2.9032 51 1 1.5100 0.9932 2.4366 52 1 0.3715 -0.3693 2.5627 53 1 2.8153 -1.2520 3.6047 54 1 3.8892 -1.7526 6.7228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698944070.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:53 Heat of formation + Delta-G solvation = -35.720855 kcal Electronic energy + Delta-G solvation = -30587.969802 eV Core-core repulsion = 26945.285336 eV Total energy + Delta-G solvation = -3642.684466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.65188 -39.63221 -38.15142 -36.36665 -34.53332 -33.72465 -33.12692 -31.75936 -31.49994 -28.93421 -27.55119 -27.15371 -25.53091 -24.19079 -23.44678 -22.99780 -22.06630 -20.69373 -20.45552 -19.49502 -18.73674 -17.54061 -16.86515 -16.71534 -16.31090 -16.09890 -15.73345 -15.47199 -15.15601 -15.03375 -14.91157 -14.83222 -14.76533 -14.25380 -14.02598 -13.91317 -13.74613 -13.26605 -13.12861 -12.97045 -12.87077 -12.79230 -12.71458 -12.60134 -12.38157 -12.35282 -12.11638 -11.98772 -11.93608 -11.82828 -11.74994 -11.58370 -11.29840 -11.22113 -11.15253 -10.93865 -10.83107 -10.77186 -9.63294 -9.21717 -8.55761 -7.79372 -4.95971 1.40340 1.44247 1.49260 2.16141 2.30393 2.62349 3.52703 3.69537 3.79603 3.82672 3.90266 3.92015 3.97737 4.13801 4.19900 4.30188 4.32166 4.38251 4.43777 4.49295 4.53457 4.59235 4.63345 4.65215 4.70842 4.73705 4.81450 4.84785 4.88549 4.90532 4.93020 4.95488 5.01124 5.05700 5.09854 5.15971 5.23173 5.28178 5.29575 5.32560 5.34478 5.35498 5.39942 5.41424 5.49206 5.54106 5.61094 5.67111 5.78963 5.98482 6.40800 6.84897 7.47934 7.79799 8.30631 8.53678 9.44591 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.008087 B = 0.006697 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3461.717822 B = 4179.695691 C = 7012.155442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.076 0.924 4 C -0.108 4.108 5 C -0.128 4.128 6 C 0.103 3.897 7 N -0.613 5.613 8 C 0.463 3.537 9 O -0.498 6.498 10 C -0.121 4.121 11 C -0.060 4.060 12 C -0.112 4.112 13 C -0.115 4.115 14 C -0.111 4.111 15 C -0.115 4.115 16 C -0.104 4.104 17 C 0.152 3.848 18 H 0.047 0.953 19 C 0.172 3.828 20 N -0.697 5.697 21 C -0.205 4.205 22 H 0.054 0.946 23 C -0.077 4.077 24 N -0.966 5.966 25 Si 0.955 3.045 26 H -0.291 1.291 27 H -0.296 1.296 28 H -0.280 1.280 29 H 0.055 0.945 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.045 0.955 41 H 0.048 0.952 42 H 0.044 0.956 43 H 0.038 0.962 44 H 0.036 0.964 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.051 0.949 48 H 0.084 0.916 49 H 0.081 0.919 50 H 0.072 0.928 51 H 0.001 0.999 52 H 0.024 0.976 53 H 0.367 0.633 54 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.688 -10.103 -18.783 22.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 H 0.094 0.906 4 C -0.145 4.145 5 C -0.166 4.166 6 C -0.019 4.019 7 N -0.350 5.350 8 C 0.250 3.750 9 O -0.370 6.370 10 C -0.161 4.161 11 C -0.079 4.079 12 C -0.150 4.150 13 C -0.153 4.153 14 C -0.149 4.149 15 C -0.153 4.153 16 C -0.141 4.141 17 C 0.048 3.952 18 H 0.065 0.935 19 C 0.045 3.955 20 N -0.338 5.338 21 C -0.338 4.338 22 H 0.072 0.928 23 C -0.269 4.269 24 N -0.619 5.619 25 Si 0.787 3.213 26 H -0.219 1.219 27 H -0.222 1.222 28 H -0.207 1.207 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.131 0.869 39 H 0.115 0.885 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.070 0.930 48 H 0.102 0.898 49 H 0.099 0.901 50 H 0.091 0.909 51 H 0.019 0.981 52 H 0.041 0.959 53 H 0.198 0.802 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -7.917 -9.652 -18.094 21.983 hybrid contribution 0.462 0.624 1.773 1.936 sum -7.454 -9.028 -16.321 20.086 Atomic orbital electron populations 1.21765 0.94657 1.01757 1.01130 1.21432 0.96736 0.99213 0.94019 0.90574 1.21515 1.00492 0.96072 0.96456 1.21939 1.01555 0.95506 0.97634 1.21909 1.00377 0.95833 0.83756 1.48051 1.57527 1.10176 1.19226 1.21405 0.80135 0.90260 0.83168 1.91177 1.54081 1.63895 1.27888 1.21725 1.01854 0.92605 0.99920 1.20781 0.96589 0.97407 0.93123 1.21527 0.97561 1.00790 0.95096 1.21429 0.98731 0.97811 0.97307 1.21512 0.99017 0.95235 0.99089 1.21512 0.97448 1.01842 0.94473 1.21556 1.00003 0.94617 0.97970 1.21226 0.97187 0.81701 0.95053 0.93493 1.20825 0.95759 0.93277 0.85635 1.42215 1.43358 1.46359 1.01844 1.19339 1.13619 1.14227 0.86600 0.92765 1.25185 1.00609 1.00982 1.00103 1.69798 1.29334 1.34797 1.27997 0.85455 0.76688 0.77803 0.81395 1.21872 1.22198 1.20705 0.92604 0.94931 0.90942 0.89874 0.91914 0.91083 0.88378 0.88003 0.91885 0.86887 0.88523 0.93680 0.93287 0.93743 0.94346 0.94549 0.91732 0.91476 0.93026 0.89764 0.90086 0.90903 0.98146 0.95853 0.80163 0.94971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.23 71.98 0.59 -2.71 16 2 C -0.09 -2.34 2.77 -10.72 -0.03 -2.37 16 3 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 4 C -0.11 -1.88 5.43 30.62 0.17 -1.71 16 5 C -0.13 -1.90 5.74 30.67 0.18 -1.72 16 6 C 0.10 2.02 6.35 86.36 0.55 2.57 16 7 N -0.61 -18.48 2.41 -795.03 -1.92 -20.39 16 8 C 0.46 16.60 7.03 87.66 0.62 17.22 16 9 O -0.50 -23.86 7.70 -3.02 -0.02 -23.88 16 10 C -0.12 -3.17 3.53 29.85 0.11 -3.06 16 11 C -0.06 -1.79 1.84 -10.79 -0.02 -1.81 16 12 C -0.11 -4.28 4.94 30.59 0.15 -4.13 16 13 C -0.12 -4.12 5.92 30.59 0.18 -3.94 16 14 C -0.11 -2.85 5.92 30.59 0.18 -2.67 16 15 C -0.12 -2.48 5.92 30.59 0.18 -2.30 16 16 C -0.10 -2.19 5.21 30.60 0.16 -2.03 16 17 C 0.15 5.20 2.61 44.97 0.12 5.32 16 18 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 19 C 0.17 7.75 3.94 86.38 0.34 8.09 16 20 N -0.70 -39.03 3.20 -343.45 -1.10 -40.13 16 21 C -0.20 -12.70 9.73 84.03 0.82 -11.89 16 22 H 0.05 3.35 7.83 -2.91 -0.02 3.33 16 23 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 24 N -0.97 -63.54 13.06 21.65 0.28 -63.26 16 25 Si 0.96 51.15 29.55 68.60 2.03 53.17 16 26 H -0.29 -15.46 7.11 99.48 0.71 -14.76 16 27 H -0.30 -15.75 7.11 99.48 0.71 -15.05 16 28 H -0.28 -14.38 7.11 99.48 0.71 -13.67 16 29 H 0.05 1.36 5.97 -2.39 -0.01 1.34 16 30 H 0.03 0.96 6.66 -2.38 -0.02 0.94 16 31 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.08 1.14 8.14 -2.38 -0.02 1.13 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.07 6.33 -2.38 -0.02 1.06 16 35 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 36 H 0.10 1.54 5.93 -2.39 -0.01 1.52 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 2.16 7.90 -2.39 -0.02 2.14 16 39 H 0.10 2.22 7.73 -2.39 -0.02 2.20 16 40 H 0.04 1.60 7.95 -2.39 -0.02 1.58 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.04 2.28 5.95 -2.39 -0.01 2.27 16 43 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.00 0.04 8.09 -2.39 -0.02 0.02 16 52 H 0.02 1.15 5.36 -2.39 -0.01 1.14 16 53 H 0.37 22.06 7.24 -92.71 -0.67 21.39 16 54 H 0.24 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -77.77 389.40 4.20 -73.56 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.18 Total: 32.49 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 4.75 Total: -11.56 kcal Atomic # 7 Polarization: -121.05 SS G_CDS: -2.73 Total: -123.78 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.02 Total: -23.88 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 2.03 Total: 53.17 kcal Total: -77.77 4.20 -73.56 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698944070.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.840 kcal (2) G-P(sol) polarization free energy of solvation -77.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds