Wall clock time and date at job start Tue Mar 31 2020 15:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.52117 * 2 1 4 4 C 1.53041 * 109.50204 * 120.08456 * 2 1 3 5 5 C 1.53032 * 109.54037 * 181.31913 * 4 2 1 6 6 C 1.53632 * 109.24054 * 298.50721 * 5 4 2 7 7 N 1.46930 * 108.53936 * 54.85892 * 6 5 4 8 8 C 1.34777 * 120.62752 * 126.37028 * 7 6 5 9 9 O 1.21284 * 119.99716 * 173.79127 * 8 7 6 10 10 C 1.50699 * 120.00252 * 353.78977 * 8 7 6 11 11 C 1.53001 * 109.47109 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46936 * 65.00243 * 11 10 8 13 13 C 1.53001 * 109.46936 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.47215 * 299.99914 * 13 12 11 15 15 C 1.53001 * 109.47241 * 59.99845 * 14 13 12 16 16 C 1.52998 * 109.47021 * 184.99832 * 11 10 8 17 17 C 1.46917 * 118.73773 * 306.09207 * 7 6 5 18 18 H 1.09002 * 109.58926 * 294.07064 * 17 7 6 19 19 C 1.52998 * 109.58567 * 173.65194 * 17 7 6 20 20 N 1.46493 * 109.47299 * 301.75024 * 19 17 7 21 21 C 1.36944 * 120.00400 * 185.38696 * 20 19 17 22 22 H 1.07992 * 119.99755 * 0.02562 * 21 20 19 23 23 C 1.38812 * 120.00203 * 180.02562 * 21 20 19 24 24 N 1.31629 * 119.99652 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00152 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46989 * 90.00231 * 25 23 21 27 27 H 1.48496 * 109.47452 * 210.00017 * 25 23 21 28 28 H 1.48492 * 109.47109 * 330.00364 * 25 23 21 29 29 H 1.08999 * 109.46579 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47016 * 300.07510 * 1 2 3 31 31 H 1.09000 * 109.47002 * 60.08210 * 1 2 3 32 32 H 1.09000 * 109.45337 * 301.33695 * 4 2 1 33 33 H 1.09004 * 109.45792 * 61.30475 * 4 2 1 34 34 H 1.09005 * 109.50082 * 58.58121 * 5 4 2 35 35 H 1.08999 * 109.50002 * 178.67910 * 5 4 2 36 36 H 1.08994 * 109.74075 * 295.12006 * 6 5 4 37 37 H 1.09000 * 109.66085 * 174.54557 * 6 5 4 38 38 H 1.08999 * 109.47269 * 60.00268 * 10 8 7 39 39 H 1.08999 * 109.47189 * 300.00224 * 10 8 7 40 40 H 1.09001 * 109.47288 * 304.99896 * 11 10 8 41 41 H 1.09004 * 109.46628 * 299.99644 * 12 11 10 42 42 H 1.09002 * 109.47179 * 60.00226 * 12 11 10 43 43 H 1.08993 * 109.47137 * 179.97438 * 13 12 11 44 44 H 1.09001 * 109.47288 * 59.99653 * 13 12 11 45 45 H 1.09002 * 109.47302 * 300.00020 * 14 13 12 46 46 H 1.09004 * 109.47688 * 180.02562 * 14 13 12 47 47 H 1.09003 * 109.47475 * 180.02562 * 15 14 13 48 48 H 1.09001 * 109.47066 * 60.00381 * 15 14 13 49 49 H 1.09002 * 109.47665 * 300.00124 * 16 11 10 50 50 H 1.09009 * 109.47162 * 60.00457 * 16 11 10 51 51 H 1.08997 * 109.47365 * 61.75536 * 19 17 7 52 52 H 1.09010 * 109.47197 * 181.74896 * 19 17 7 53 53 H 0.97000 * 120.00050 * 5.38938 * 20 19 17 54 54 H 0.97003 * 119.99413 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7231 1.2483 5 6 3.5709 -0.6950 1.2659 6 6 4.1051 -1.4318 0.0282 7 7 3.5046 -0.8290 -1.1697 8 6 4.2811 -0.3863 -2.1784 9 8 3.7731 0.0053 -3.2078 10 6 5.7805 -0.3777 -2.0273 11 6 6.4189 0.1670 -3.3066 12 6 6.0222 1.6333 -3.4901 13 6 6.6602 2.1779 -4.7697 14 6 8.1828 2.0706 -4.6660 15 6 8.5795 0.6044 -4.4825 16 6 7.9416 0.0599 -3.2022 17 6 2.0414 -0.7237 -1.2496 18 1 1.6053 -1.7215 -1.2982 19 6 1.6518 0.0706 -2.4979 20 7 2.2675 1.3987 -2.4435 21 6 1.9713 2.3306 -3.4023 22 1 1.2835 2.0865 -4.1982 23 6 2.5552 3.5889 -3.3510 24 7 3.3932 3.8865 -2.3805 25 14 2.1517 4.8598 -4.6592 26 1 0.9779 5.6599 -4.2266 27 1 3.3183 5.7578 -4.8535 28 1 1.8381 4.1721 -5.9373 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5150 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 1.6583 -0.2245 2.1388 33 1 1.6970 -1.7574 1.2351 34 1 3.9160 0.3389 1.2540 35 1 3.9335 -1.1896 2.1670 36 1 3.8340 -2.4861 0.0818 37 1 5.1897 -1.3331 -0.0177 38 1 6.1336 -1.3935 -1.8496 39 1 6.0571 0.2557 -1.1845 40 1 6.0716 -0.4131 -4.1615 41 1 4.9374 1.7096 -3.5644 42 1 6.3696 2.2135 -2.6351 43 1 6.3772 3.2223 -4.9007 44 1 6.3124 1.5977 -5.6244 45 1 8.5306 2.6508 -3.8113 46 1 8.6374 2.4590 -5.5775 47 1 9.6643 0.5280 -4.4082 48 1 8.2318 0.0242 -5.3372 49 1 8.2890 0.6400 -2.3473 50 1 8.2242 -0.9847 -3.0715 51 1 2.0002 -0.4554 -3.3867 52 1 0.5674 0.1742 -2.5389 53 1 2.8850 1.6181 -1.7284 54 1 3.8014 4.7657 -2.3449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698944071.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:57 Heat of formation + Delta-G solvation = -38.646923 kcal Electronic energy + Delta-G solvation = -30912.073565 eV Core-core repulsion = 27269.262215 eV Total energy + Delta-G solvation = -3642.811350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.59509 -39.54522 -38.08024 -36.34622 -34.60735 -33.69943 -33.18409 -31.69944 -31.43429 -29.11533 -27.45388 -26.97900 -25.43455 -24.06188 -23.38155 -22.58293 -22.18415 -20.93835 -20.45916 -19.46951 -19.08745 -17.54650 -16.94274 -16.42315 -16.22473 -15.98941 -15.69171 -15.49336 -15.27308 -15.01987 -14.87047 -14.71109 -14.61799 -14.48344 -13.94911 -13.76615 -13.36715 -13.29067 -13.13896 -13.03684 -12.89366 -12.77142 -12.72401 -12.61049 -12.44098 -12.26699 -12.12259 -11.97869 -11.90436 -11.77662 -11.66777 -11.58352 -11.40334 -11.26219 -11.06028 -10.94924 -10.81602 -10.63559 -9.57666 -9.27869 -8.51661 -7.76197 -4.92517 1.41033 1.42427 1.49405 2.11193 2.35702 2.63872 3.56132 3.73453 3.84014 3.91053 3.94296 3.94969 4.02121 4.16121 4.17682 4.31343 4.33449 4.38947 4.42514 4.50563 4.56633 4.66275 4.66607 4.68280 4.71259 4.74978 4.85360 4.88270 4.91353 4.93403 4.94072 4.97571 5.01381 5.09100 5.10978 5.18470 5.24720 5.26030 5.33296 5.33764 5.37888 5.42102 5.47457 5.52271 5.55381 5.58448 5.66087 5.72536 5.94257 6.03992 6.43962 6.84027 7.52540 7.76930 8.33220 8.59086 9.46149 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.009329 B = 0.006725 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.817940 B = 4162.806959 C = 6494.209429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 H 0.038 0.962 4 C -0.105 4.105 5 C -0.133 4.133 6 C 0.107 3.893 7 N -0.620 5.620 8 C 0.481 3.519 9 O -0.510 6.510 10 C -0.122 4.122 11 C -0.060 4.060 12 C -0.109 4.109 13 C -0.113 4.113 14 C -0.113 4.113 15 C -0.112 4.112 16 C -0.106 4.106 17 C 0.154 3.846 18 H 0.085 0.915 19 C 0.157 3.843 20 N -0.697 5.697 21 C -0.206 4.206 22 H 0.050 0.950 23 C -0.064 4.064 24 N -0.952 5.952 25 Si 0.943 3.057 26 H -0.292 1.292 27 H -0.300 1.300 28 H -0.286 1.286 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.066 0.934 42 H 0.029 0.971 43 H 0.026 0.974 44 H 0.046 0.954 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.058 0.942 49 H 0.063 0.937 50 H 0.084 0.916 51 H 0.023 0.977 52 H 0.007 0.993 53 H 0.372 0.628 54 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.772 -15.516 8.071 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.116 4.116 3 H 0.057 0.943 4 C -0.143 4.143 5 C -0.171 4.171 6 C -0.015 4.015 7 N -0.356 5.356 8 C 0.269 3.731 9 O -0.384 6.384 10 C -0.162 4.162 11 C -0.079 4.079 12 C -0.147 4.147 13 C -0.151 4.151 14 C -0.150 4.150 15 C -0.149 4.149 16 C -0.143 4.143 17 C 0.051 3.949 18 H 0.103 0.897 19 C 0.030 3.970 20 N -0.339 5.339 21 C -0.339 4.339 22 H 0.068 0.932 23 C -0.256 4.256 24 N -0.605 5.605 25 Si 0.776 3.224 26 H -0.220 1.220 27 H -0.227 1.227 28 H -0.212 1.212 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.134 0.866 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.045 0.955 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.102 0.898 51 H 0.041 0.959 52 H 0.025 0.975 53 H 0.205 0.795 54 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 7.421 -15.262 7.327 18.485 hybrid contribution -0.471 1.798 -0.828 2.035 sum 6.951 -13.464 6.499 16.487 Atomic orbital electron populations 1.21713 0.94199 1.02239 1.01233 1.21389 0.96351 0.98805 0.95040 0.94304 1.21541 0.95526 1.01039 0.96180 1.21991 0.95951 1.00437 0.98714 1.22014 0.99031 0.97335 0.83086 1.48135 1.05637 1.62626 1.19243 1.21124 0.90326 0.77668 0.83958 1.90888 1.74211 1.43645 1.29632 1.21707 0.90888 1.03777 0.99818 1.20800 0.95666 0.95193 0.96218 1.21507 1.02108 0.95302 0.95766 1.21411 0.96824 0.98754 0.98072 1.21517 0.93954 0.98046 1.01490 1.21501 1.00757 0.94735 0.97942 1.21577 0.92776 1.01867 0.98107 1.21367 0.80531 0.98259 0.94780 0.89695 1.20980 0.93388 0.86802 0.95796 1.42139 1.52965 1.09021 1.29788 1.19282 1.18547 0.92549 1.03498 0.93217 1.24989 1.01269 0.98970 1.00393 1.69765 1.35461 1.20590 1.34657 0.85560 0.76409 0.80304 0.80146 1.22040 1.22658 1.21161 0.90775 0.92173 0.94576 0.91454 0.89943 0.94001 0.87993 0.89414 0.88506 0.86600 0.89584 0.92915 0.91568 0.95243 0.95478 0.93560 0.92460 0.91635 0.89902 0.92349 0.91818 0.89786 0.95902 0.97515 0.79499 0.95080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 8.97 71.98 0.65 -3.18 16 2 C -0.10 -2.95 2.24 -10.71 -0.02 -2.98 16 3 H 0.04 1.58 6.92 -2.39 -0.02 1.56 16 4 C -0.11 -2.28 5.16 30.62 0.16 -2.12 16 5 C -0.13 -2.67 6.10 30.82 0.19 -2.49 16 6 C 0.11 2.17 6.38 86.51 0.55 2.72 16 7 N -0.62 -19.10 2.84 -794.19 -2.26 -21.36 16 8 C 0.48 17.75 6.26 87.66 0.55 18.30 16 9 O -0.51 -24.09 8.34 -3.04 -0.03 -24.11 16 10 C -0.12 -3.52 3.53 29.85 0.11 -3.41 16 11 C -0.06 -1.91 1.84 -10.79 -0.02 -1.93 16 12 C -0.11 -4.59 4.94 30.60 0.15 -4.43 16 13 C -0.11 -4.35 5.92 30.59 0.18 -4.17 16 14 C -0.11 -3.23 5.92 30.59 0.18 -3.05 16 15 C -0.11 -2.60 5.92 30.61 0.18 -2.42 16 16 C -0.11 -2.49 5.21 30.61 0.16 -2.33 16 17 C 0.15 5.10 2.62 44.98 0.12 5.22 16 18 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 19 C 0.16 6.97 4.82 86.38 0.42 7.39 16 20 N -0.70 -36.97 2.90 -343.46 -1.00 -37.97 16 21 C -0.21 -12.34 9.83 84.03 0.83 -11.51 16 22 H 0.05 3.03 7.83 -2.91 -0.02 3.01 16 23 C -0.06 -3.87 5.50 84.86 0.47 -3.41 16 24 N -0.95 -59.34 13.06 21.65 0.28 -59.06 16 25 Si 0.94 50.19 29.55 68.60 2.03 52.22 16 26 H -0.29 -15.25 7.11 99.48 0.71 -14.54 16 27 H -0.30 -16.03 7.11 99.48 0.71 -15.32 16 28 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.04 1.22 6.58 -2.39 -0.02 1.20 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.10 1.64 5.93 -2.39 -0.01 1.63 16 38 H 0.12 2.37 7.69 -2.39 -0.02 2.35 16 39 H 0.09 2.45 7.94 -2.39 -0.02 2.43 16 40 H 0.05 1.86 7.96 -2.39 -0.02 1.85 16 41 H 0.07 3.55 5.95 -2.38 -0.01 3.53 16 42 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 51 H 0.02 1.14 6.22 -2.39 -0.01 1.13 16 52 H 0.01 0.32 6.56 -2.38 -0.02 0.31 16 53 H 0.37 20.80 5.76 -92.71 -0.53 20.27 16 54 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -73.73 391.24 4.18 -69.55 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: 0.32 Total: 34.54 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 4.83 Total: -13.80 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -2.97 Total: -118.39 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.03 Total: -24.11 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 2.03 Total: 52.22 kcal Total: -73.73 4.18 -69.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698944071.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.903 kcal (2) G-P(sol) polarization free energy of solvation -73.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds