Wall clock time and date at job start Tue Mar 31 2020 15:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.49726 * 2 1 4 4 C 1.53040 * 109.50220 * 120.10322 * 2 1 3 5 5 C 1.53044 * 109.53808 * 58.58459 * 4 2 1 6 6 C 1.52761 * 109.37925 * 61.23864 * 5 4 2 7 7 N 1.46919 * 109.01420 * 305.58937 * 6 5 4 8 8 C 1.34779 * 120.63322 * 233.58625 * 7 6 5 9 9 O 1.21276 * 119.99919 * 174.01616 * 8 7 6 10 10 C 1.50696 * 119.99913 * 354.01517 * 8 7 6 11 11 C 1.52995 * 109.47586 * 179.97438 * 10 8 7 12 12 C 1.53009 * 109.47057 * 64.99771 * 11 10 8 13 13 C 1.52998 * 109.47130 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46805 * 299.99741 * 13 12 11 15 15 C 1.53003 * 109.47291 * 60.00393 * 14 13 12 16 16 C 1.52994 * 109.47078 * 299.99835 * 15 14 13 17 17 C 1.46925 * 118.73750 * 53.30640 * 7 6 5 18 18 H 1.09007 * 109.58263 * 66.43648 * 17 7 6 19 19 C 1.53004 * 109.58957 * 186.85649 * 17 7 6 20 20 N 1.46500 * 109.46863 * 292.77650 * 19 17 7 21 21 C 1.36943 * 119.99561 * 185.79637 * 20 19 17 22 22 H 1.07997 * 120.00247 * 0.02562 * 21 20 19 23 23 C 1.38817 * 120.00011 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99521 * 0.02562 * 23 21 20 25 25 Si 1.86791 * 120.00110 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47257 * 90.00282 * 25 23 21 27 27 H 1.48497 * 109.47387 * 209.99967 * 25 23 21 28 28 H 1.48494 * 109.47295 * 330.00144 * 25 23 21 29 29 H 1.09005 * 109.46953 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46723 * 300.05489 * 1 2 3 31 31 H 1.08991 * 109.47508 * 60.05989 * 1 2 3 32 32 H 1.09004 * 109.45978 * 178.60434 * 4 2 1 33 33 H 1.08996 * 109.45588 * 298.56604 * 4 2 1 34 34 H 1.08994 * 109.49942 * 181.31971 * 5 4 2 35 35 H 1.09000 * 109.49361 * 301.38798 * 5 4 2 36 36 H 1.09009 * 109.50844 * 185.70677 * 6 5 4 37 37 H 1.09007 * 109.43144 * 65.43173 * 6 5 4 38 38 H 1.08998 * 109.47314 * 59.99943 * 10 8 7 39 39 H 1.09001 * 109.46936 * 300.00274 * 10 8 7 40 40 H 1.08998 * 109.47025 * 305.00114 * 11 10 8 41 41 H 1.09004 * 109.46690 * 300.00554 * 12 11 10 42 42 H 1.08998 * 109.46923 * 60.00280 * 12 11 10 43 43 H 1.09004 * 109.46712 * 180.02562 * 13 12 11 44 44 H 1.08998 * 109.47425 * 60.00053 * 13 12 11 45 45 H 1.08998 * 109.47383 * 300.00337 * 14 13 12 46 46 H 1.09000 * 109.46862 * 180.02562 * 14 13 12 47 47 H 1.08999 * 109.47571 * 179.97438 * 15 14 13 48 48 H 1.09008 * 109.46965 * 59.99801 * 15 14 13 49 49 H 1.08998 * 109.47103 * 299.99754 * 16 15 14 50 50 H 1.08994 * 109.47436 * 179.97438 * 16 15 14 51 51 H 1.09005 * 109.46616 * 52.77222 * 19 17 7 52 52 H 1.08992 * 109.47258 * 172.77358 * 19 17 7 53 53 H 0.96997 * 120.00386 * 5.79715 * 20 19 17 54 54 H 0.97008 * 119.99573 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7236 1.2480 5 6 1.5031 -2.1563 1.2652 6 6 2.0091 -2.9025 0.0320 7 7 1.6515 -2.1377 -1.1704 8 6 0.9739 -2.7210 -2.1790 9 8 0.5899 -2.0546 -3.1167 10 6 0.6934 -4.2011 -2.1414 11 6 -0.0845 -4.6049 -3.3955 12 6 0.7926 -4.3903 -4.6308 13 6 0.0145 -4.7934 -5.8849 14 6 -0.3788 -6.2689 -5.7887 15 6 -1.2558 -6.4835 -4.5535 16 6 -0.4778 -6.0803 -3.2994 17 6 2.0412 -0.7233 -1.2499 18 1 3.1274 -0.6458 -1.2984 19 6 1.4227 -0.0901 -2.4979 20 7 2.0291 -0.6777 -3.6951 21 6 1.7185 -0.1823 -4.9334 22 1 1.0269 0.6418 -5.0274 23 6 2.2935 -0.7386 -6.0678 24 7 3.1368 -1.7427 -5.9532 25 14 1.8704 -0.0623 -7.7568 26 1 2.8225 1.0216 -8.1088 27 1 1.9646 -1.1500 -8.7634 28 1 0.4877 0.4791 -7.7411 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5147 0.8896 31 1 -0.3634 0.5128 -0.8904 32 1 3.1306 -0.7449 1.2349 33 1 1.6988 -0.1966 2.1387 34 1 1.8481 -2.6636 2.1660 35 1 0.4133 -2.1359 1.2538 36 1 1.5473 -3.8889 -0.0116 37 1 3.0927 -3.0063 0.0903 38 1 0.1025 -4.4366 -1.2563 39 1 1.6353 -4.7486 -2.1057 40 1 -0.9835 -3.9941 -3.4777 41 1 1.0724 -3.3390 -4.6994 42 1 1.6916 -5.0010 -4.5486 43 1 0.6395 -4.6409 -6.7649 44 1 -0.8844 -4.1824 -5.9670 45 1 0.5201 -6.8799 -5.7067 46 1 -0.9327 -6.5562 -6.6824 47 1 -1.5363 -7.5346 -4.4852 48 1 -2.1548 -5.8725 -4.6356 49 1 0.4211 -6.6914 -3.2174 50 1 -1.1026 -6.2328 -2.4195 51 1 0.3488 -0.2767 -2.5057 52 1 1.6048 0.9844 -2.4884 53 1 2.6506 -1.4177 -3.6107 54 1 3.5383 -2.1317 -6.7460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698944072.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:01 Heat of formation + Delta-G solvation = -31.283179 kcal Electronic energy + Delta-G solvation = -30794.810605 eV Core-core repulsion = 27152.318571 eV Total energy + Delta-G solvation = -3642.492034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.65763 -39.59624 -38.13392 -36.34155 -34.51601 -33.71045 -33.10105 -31.74512 -31.44723 -28.90612 -27.53514 -27.15073 -25.54235 -24.13158 -23.39364 -22.97668 -22.05892 -20.68636 -20.43867 -19.48673 -18.71533 -17.50411 -16.77504 -16.72602 -16.27991 -16.07921 -15.75030 -15.44862 -15.17363 -15.03733 -14.90507 -14.83219 -14.73810 -14.16365 -14.06638 -13.82244 -13.70562 -13.25560 -13.12345 -12.95174 -12.85087 -12.80418 -12.67128 -12.59570 -12.42866 -12.30008 -12.06765 -11.96943 -11.90076 -11.80611 -11.75405 -11.55640 -11.27115 -11.20454 -11.13806 -10.90828 -10.80799 -10.68663 -9.52963 -9.26738 -8.46775 -7.76835 -4.92603 1.41623 1.43033 1.50397 2.19975 2.34326 2.63443 3.55579 3.72044 3.82984 3.84376 3.93227 3.93775 3.98826 4.16502 4.21660 4.32065 4.34663 4.40596 4.45241 4.51228 4.55475 4.60068 4.67216 4.67436 4.73657 4.75190 4.85557 4.87030 4.89631 4.91953 4.96409 4.96980 5.01837 5.06569 5.11800 5.16202 5.24673 5.29824 5.32768 5.34089 5.35308 5.37266 5.42684 5.45758 5.54226 5.57304 5.62609 5.71190 5.95004 6.03122 6.42681 6.88334 7.50487 7.82663 8.30820 8.55000 9.45860 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.006506 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3106.781003 B = 4302.536338 C = 6820.150487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.077 0.923 4 C -0.107 4.107 5 C -0.129 4.129 6 C 0.105 3.895 7 N -0.614 5.614 8 C 0.462 3.538 9 O -0.493 6.493 10 C -0.121 4.121 11 C -0.059 4.059 12 C -0.113 4.113 13 C -0.112 4.112 14 C -0.112 4.112 15 C -0.113 4.113 16 C -0.105 4.105 17 C 0.152 3.848 18 H 0.050 0.950 19 C 0.168 3.832 20 N -0.695 5.695 21 C -0.206 4.206 22 H 0.052 0.948 23 C -0.069 4.069 24 N -0.955 5.955 25 Si 0.949 3.051 26 H -0.291 1.291 27 H -0.299 1.299 28 H -0.284 1.284 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.036 0.964 43 H 0.028 0.972 44 H 0.040 0.960 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.083 0.917 48 H 0.054 0.946 49 H 0.067 0.933 50 H 0.082 0.918 51 H 0.029 0.971 52 H -0.001 1.001 53 H 0.368 0.632 54 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.884 -9.206 18.304 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 H 0.095 0.905 4 C -0.145 4.145 5 C -0.167 4.167 6 C -0.017 4.017 7 N -0.352 5.352 8 C 0.249 3.751 9 O -0.365 6.365 10 C -0.161 4.161 11 C -0.078 4.078 12 C -0.151 4.151 13 C -0.149 4.149 14 C -0.149 4.149 15 C -0.151 4.151 16 C -0.142 4.142 17 C 0.048 3.952 18 H 0.068 0.932 19 C 0.042 3.958 20 N -0.336 5.336 21 C -0.340 4.340 22 H 0.070 0.930 23 C -0.261 4.261 24 N -0.608 5.608 25 Si 0.781 3.219 26 H -0.219 1.219 27 H -0.226 1.226 28 H -0.210 1.210 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.082 0.918 38 H 0.131 0.869 39 H 0.108 0.892 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.047 0.953 44 H 0.059 0.941 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.102 0.898 48 H 0.073 0.927 49 H 0.086 0.914 50 H 0.100 0.900 51 H 0.047 0.953 52 H 0.017 0.983 53 H 0.201 0.799 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.212 -8.726 17.655 20.650 hybrid contribution 0.385 0.601 -1.800 1.936 sum -5.827 -8.125 15.855 18.744 Atomic orbital electron populations 1.21762 0.94842 1.01611 1.01027 1.21428 0.96592 0.99286 0.94127 0.90474 1.21507 1.00546 0.95953 0.96463 1.21865 1.01449 0.95686 0.97719 1.21800 1.00476 0.95752 0.83713 1.47976 1.57871 1.10257 1.19090 1.21213 0.80679 0.91174 0.81999 1.91096 1.48040 1.63936 1.33409 1.21697 1.02308 0.91914 1.00140 1.20781 0.97194 0.96816 0.93028 1.21553 0.96750 1.02381 0.94408 1.21387 0.98725 0.97361 0.97467 1.21517 0.99988 0.94539 0.98881 1.21499 0.97821 1.01754 0.93995 1.21557 1.00508 0.93853 0.98313 1.21244 0.97180 0.81680 0.95065 0.93218 1.20888 0.96680 0.92729 0.85504 1.42267 1.51420 1.39035 1.00912 1.19305 1.18469 1.10308 0.85868 0.92993 1.25078 1.01591 0.99879 0.99534 1.69781 1.35545 1.28147 1.27330 0.85477 0.77370 0.76868 0.82201 1.21854 1.22608 1.20978 0.92867 0.91097 0.94876 0.91738 0.89979 0.88361 0.91403 0.88222 0.91775 0.86922 0.89216 0.93413 0.91793 0.94552 0.95275 0.94145 0.91986 0.91788 0.89837 0.92746 0.91393 0.89980 0.95348 0.98335 0.79947 0.95041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.21 71.98 0.59 -2.78 16 2 C -0.09 -2.34 2.81 -10.72 -0.03 -2.37 16 3 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 4 C -0.11 -1.87 5.43 30.62 0.17 -1.71 16 5 C -0.13 -1.97 5.72 30.53 0.17 -1.80 16 6 C 0.10 2.07 6.30 86.22 0.54 2.62 16 7 N -0.61 -18.59 2.42 -795.84 -1.92 -20.52 16 8 C 0.46 16.76 6.69 87.66 0.59 17.34 16 9 O -0.49 -23.32 7.63 -3.02 -0.02 -23.34 16 10 C -0.12 -3.34 3.60 29.84 0.11 -3.24 16 11 C -0.06 -1.86 1.84 -10.79 -0.02 -1.88 16 12 C -0.11 -4.63 4.94 30.60 0.15 -4.48 16 13 C -0.11 -4.28 5.92 30.59 0.18 -4.10 16 14 C -0.11 -3.13 5.92 30.60 0.18 -2.95 16 15 C -0.11 -2.61 5.92 30.59 0.18 -2.42 16 16 C -0.10 -2.39 5.20 30.59 0.16 -2.23 16 17 C 0.15 5.14 2.66 44.98 0.12 5.26 16 18 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 19 C 0.17 7.52 4.13 86.38 0.36 7.88 16 20 N -0.70 -37.98 3.16 -343.44 -1.08 -39.06 16 21 C -0.21 -12.56 9.69 84.03 0.81 -11.75 16 22 H 0.05 3.18 7.83 -2.91 -0.02 3.16 16 23 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 24 N -0.96 -60.73 13.06 21.65 0.28 -60.45 16 25 Si 0.95 50.50 29.55 68.60 2.03 52.52 16 26 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 27 H -0.30 -15.99 7.11 99.48 0.71 -15.28 16 28 H -0.28 -14.80 7.11 99.48 0.71 -14.10 16 29 H 0.05 1.36 5.97 -2.38 -0.01 1.35 16 30 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.03 1.00 6.51 -2.39 -0.02 0.98 16 32 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 1.10 6.33 -2.39 -0.02 1.08 16 36 H 0.10 1.57 5.97 -2.38 -0.01 1.55 16 37 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.11 2.26 7.44 -2.39 -0.02 2.24 16 39 H 0.09 2.33 8.13 -2.39 -0.02 2.31 16 40 H 0.05 1.72 7.96 -2.39 -0.02 1.70 16 41 H 0.06 3.40 5.95 -2.38 -0.01 3.38 16 42 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 49 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 51 H 0.03 1.38 5.10 -2.38 -0.01 1.37 16 52 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 53 H 0.37 21.43 6.83 -92.71 -0.63 20.79 16 54 H 0.24 15.09 8.31 -92.70 -0.77 14.32 16 Total: -1.00 -74.43 388.36 4.23 -70.20 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: 0.22 Total: 33.02 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 4.73 Total: -12.38 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -2.72 Total: -120.03 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.02 Total: -23.34 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 2.03 Total: 52.52 kcal Total: -74.43 4.23 -70.20 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698944072.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.917 kcal (2) G-P(sol) polarization free energy of solvation -74.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds