Wall clock time and date at job start Tue Mar 31 2020 15:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.52653 * 2 1 4 4 C 1.53039 * 109.49682 * 239.91658 * 2 1 3 5 5 C 1.53038 * 109.54062 * 178.68515 * 4 2 1 6 6 C 1.52763 * 109.38249 * 61.23843 * 5 4 2 7 7 N 1.46921 * 109.00814 * 305.59239 * 6 5 4 8 8 C 1.34780 * 120.62961 * 233.57970 * 7 6 5 9 9 O 1.21278 * 120.00186 * 175.14297 * 8 7 6 10 10 C 1.50702 * 119.99796 * 355.14772 * 8 7 6 11 11 C 1.53004 * 109.47086 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.46760 * 64.99666 * 11 10 8 13 13 C 1.53004 * 109.46760 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47088 * 300.00185 * 13 12 11 15 15 C 1.52998 * 109.47253 * 60.00245 * 14 13 12 16 16 C 1.52997 * 109.47088 * 184.99851 * 11 10 8 17 17 C 1.46924 * 118.74007 * 53.30914 * 7 6 5 18 18 H 1.08996 * 109.58575 * 66.43174 * 17 7 6 19 19 C 1.53003 * 109.58774 * 186.85525 * 17 7 6 20 20 N 1.46499 * 109.47055 * 62.28985 * 19 17 7 21 21 C 1.36935 * 120.00127 * 181.43222 * 20 19 17 22 22 H 1.08005 * 119.99915 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00294 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99854 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00150 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47115 * 89.99679 * 25 23 21 27 27 H 1.48493 * 109.46991 * 210.00413 * 25 23 21 28 28 H 1.48501 * 109.46913 * 329.99823 * 25 23 21 29 29 H 1.09004 * 109.46815 * 299.92244 * 1 2 3 30 30 H 1.08998 * 109.46927 * 59.91840 * 1 2 3 31 31 H 1.08993 * 109.47399 * 179.91652 * 1 2 3 32 32 H 1.09002 * 109.46522 * 298.70637 * 4 2 1 33 33 H 1.09004 * 109.46035 * 58.66437 * 4 2 1 34 34 H 1.09001 * 109.50289 * 181.32080 * 5 4 2 35 35 H 1.09008 * 109.49916 * 301.41431 * 5 4 2 36 36 H 1.09000 * 109.51156 * 185.70837 * 6 5 4 37 37 H 1.08997 * 109.42999 * 65.43140 * 6 5 4 38 38 H 1.08991 * 109.47573 * 59.99623 * 10 8 7 39 39 H 1.09002 * 109.46893 * 299.99578 * 10 8 7 40 40 H 1.08999 * 109.46972 * 305.00012 * 11 10 8 41 41 H 1.08999 * 109.47299 * 300.00083 * 12 11 10 42 42 H 1.08999 * 109.47096 * 60.00421 * 12 11 10 43 43 H 1.08999 * 109.47098 * 179.97438 * 13 12 11 44 44 H 1.08999 * 109.46972 * 60.00346 * 13 12 11 45 45 H 1.08999 * 109.47345 * 299.99932 * 14 13 12 46 46 H 1.09009 * 109.47126 * 179.97438 * 14 13 12 47 47 H 1.08999 * 109.47081 * 179.97438 * 15 14 13 48 48 H 1.08999 * 109.47651 * 59.99885 * 15 14 13 49 49 H 1.08999 * 109.46886 * 299.99661 * 16 11 10 50 50 H 1.08991 * 109.47096 * 59.99871 * 16 11 10 51 51 H 1.08991 * 109.47269 * 182.29515 * 19 17 7 52 52 H 1.08998 * 109.46843 * 302.29670 * 19 17 7 53 53 H 0.96998 * 119.99753 * 1.44139 * 20 19 17 54 54 H 0.96996 * 119.99681 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5708 -0.6951 -1.2660 6 6 4.1054 -1.4217 -0.0332 7 7 3.5045 -0.8292 1.1695 8 6 4.2811 -0.3857 2.1779 9 8 3.7794 0.1808 3.1257 10 6 5.7729 -0.5936 2.1276 11 6 6.4131 -0.0004 3.3843 12 6 5.9374 -0.7767 4.6140 13 6 6.5781 -0.1839 5.8706 14 6 8.1010 -0.2837 5.7621 15 6 8.5767 0.4925 4.5324 16 6 7.9361 -0.0997 3.2761 17 6 2.0413 -0.7238 1.2496 18 1 1.6052 -1.7216 1.2980 19 6 1.6517 0.0705 2.4978 20 7 2.1873 1.4304 2.3982 21 6 1.9892 2.3209 3.4194 22 1 1.4384 2.0206 4.2985 23 6 2.4963 3.6097 3.3247 24 7 3.1671 3.9758 2.2531 25 14 2.2266 4.8242 4.7181 26 1 3.3463 4.7214 5.6881 27 1 2.1719 6.2029 4.1693 28 1 0.9469 4.5137 5.4047 29 1 -0.3633 0.5127 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3634 -1.0276 -0.0015 32 1 1.6967 -1.7573 -1.2353 33 1 1.6581 -0.2245 -2.1389 34 1 3.9334 -1.1898 -2.1671 35 1 3.9160 0.3388 -1.2541 36 1 5.1895 -1.3161 0.0101 37 1 3.8412 -2.4775 -0.0915 38 1 6.1791 -0.0992 1.2453 39 1 5.9895 -1.6608 2.0782 40 1 6.1231 1.0459 3.4805 41 1 4.8524 -0.7059 4.6910 42 1 6.2274 -1.8230 4.5178 43 1 6.2389 -0.7365 6.7467 44 1 6.2885 0.8625 5.9670 45 1 8.3906 -1.3301 5.6657 46 1 8.5575 0.1391 6.6571 47 1 9.6616 0.4218 4.4554 48 1 8.2872 1.5389 4.6288 49 1 8.2260 -1.1460 3.1800 50 1 8.2749 0.4532 2.4001 51 1 0.5655 0.1127 2.5773 52 1 2.0620 -0.4176 3.3818 53 1 2.6822 1.7000 1.6087 54 1 3.5211 4.8765 2.1869 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698944073.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:05 Heat of formation + Delta-G solvation = -37.893026 kcal Electronic energy + Delta-G solvation = -30542.644306 eV Core-core repulsion = 26899.865647 eV Total energy + Delta-G solvation = -3642.778658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.58567 -39.61765 -38.08940 -36.41066 -34.60860 -33.70888 -33.21409 -31.75153 -31.54502 -29.14388 -27.47682 -26.99988 -25.43225 -24.15638 -23.46817 -22.62059 -22.18293 -20.95773 -20.52770 -19.42916 -19.09095 -17.58722 -16.91174 -16.50759 -16.26926 -16.08921 -15.78010 -15.56038 -15.17413 -15.08298 -14.93642 -14.74752 -14.69438 -14.17758 -14.10235 -13.93934 -13.39803 -13.24913 -13.14208 -13.06799 -12.91654 -12.82969 -12.75438 -12.68424 -12.47004 -12.32385 -12.12885 -12.01854 -11.95903 -11.78934 -11.69838 -11.56406 -11.38710 -11.29786 -11.08496 -10.97353 -10.86492 -10.78877 -9.54851 -9.27639 -8.53280 -7.81207 -4.97039 1.38974 1.42284 1.48807 2.13961 2.34299 2.62000 3.52036 3.70661 3.78051 3.88773 3.90609 3.93532 3.99490 4.14564 4.17102 4.28078 4.32658 4.38086 4.39499 4.47608 4.51806 4.60307 4.64722 4.68335 4.69438 4.71693 4.79367 4.86028 4.87680 4.90053 4.93621 4.94963 5.00438 5.06132 5.09520 5.17274 5.18447 5.23407 5.27809 5.32973 5.36153 5.37830 5.43707 5.45774 5.50187 5.54131 5.62738 5.65216 5.70600 5.97985 6.40684 6.84643 7.47822 7.79180 8.30423 8.53908 9.43560 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.008649 B = 0.006298 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3236.578553 B = 4444.523041 C = 6781.506405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 H 0.036 0.964 4 C -0.105 4.105 5 C -0.134 4.134 6 C 0.108 3.892 7 N -0.618 5.618 8 C 0.470 3.530 9 O -0.501 6.501 10 C -0.120 4.120 11 C -0.067 4.067 12 C -0.107 4.107 13 C -0.120 4.120 14 C -0.110 4.110 15 C -0.121 4.121 16 C -0.104 4.104 17 C 0.154 3.846 18 H 0.089 0.911 19 C 0.161 3.839 20 N -0.695 5.695 21 C -0.190 4.190 22 H 0.054 0.946 23 C -0.084 4.084 24 N -0.972 5.972 25 Si 0.955 3.045 26 H -0.301 1.301 27 H -0.296 1.296 28 H -0.275 1.275 29 H 0.034 0.966 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.038 0.962 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.024 0.976 41 H 0.045 0.955 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.026 0.974 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.082 0.918 48 H 0.035 0.965 49 H 0.086 0.914 50 H 0.062 0.938 51 H 0.005 0.995 52 H 0.025 0.975 53 H 0.369 0.631 54 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.978 -18.234 -6.473 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.118 4.118 3 H 0.055 0.945 4 C -0.142 4.142 5 C -0.172 4.172 6 C -0.013 4.013 7 N -0.355 5.355 8 C 0.257 3.743 9 O -0.374 6.374 10 C -0.160 4.160 11 C -0.086 4.086 12 C -0.144 4.144 13 C -0.158 4.158 14 C -0.147 4.147 15 C -0.159 4.159 16 C -0.141 4.141 17 C 0.050 3.950 18 H 0.107 0.893 19 C 0.034 3.966 20 N -0.336 5.336 21 C -0.324 4.324 22 H 0.072 0.928 23 C -0.275 4.275 24 N -0.627 5.627 25 Si 0.787 3.213 26 H -0.229 1.229 27 H -0.223 1.223 28 H -0.200 1.200 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.057 0.943 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.133 0.867 40 H 0.042 0.958 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.045 0.955 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.100 0.900 48 H 0.054 0.946 49 H 0.105 0.895 50 H 0.081 0.919 51 H 0.022 0.978 52 H 0.043 0.957 53 H 0.202 0.798 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 7.624 -17.897 -5.755 20.286 hybrid contribution -0.277 1.855 0.744 2.017 sum 7.347 -16.042 -5.011 18.342 Atomic orbital electron populations 1.21702 0.94158 1.02284 1.01196 1.21413 0.96432 0.98739 0.95238 0.94503 1.21536 0.95444 1.01113 0.96129 1.21856 0.96066 1.00412 0.98876 1.21810 0.98913 0.97628 0.82996 1.48115 1.05547 1.62964 1.18888 1.21242 0.90315 0.79065 0.83674 1.91005 1.74029 1.37620 1.34721 1.21689 0.90853 1.03793 0.99624 1.20790 0.95683 0.98087 0.94019 1.21536 0.99973 0.98936 0.93999 1.21503 0.96853 0.99442 0.97956 1.21495 0.94035 1.01276 0.97897 1.21535 1.00635 0.98613 0.95076 1.21524 0.92633 1.02237 0.97752 1.21371 0.80627 0.98303 0.94660 0.89314 1.20959 0.93546 0.86159 0.95920 1.42193 1.64333 1.07791 1.19288 1.19356 1.24304 0.91742 0.96958 0.92845 1.25174 1.03173 0.99246 0.99908 1.69793 1.44952 1.18197 1.29730 0.85361 0.77351 0.79047 0.79546 1.22918 1.22264 1.20025 0.94648 0.92263 0.90613 0.89743 0.91513 0.87827 0.94327 0.88664 0.89296 0.89178 0.86661 0.95778 0.93632 0.90808 0.91877 0.95467 0.90175 0.91795 0.89952 0.94612 0.89536 0.91926 0.97774 0.95705 0.79765 0.95038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 8.97 71.98 0.65 -3.24 16 2 C -0.10 -3.08 2.21 -10.72 -0.02 -3.10 16 3 H 0.04 1.54 6.52 -2.39 -0.02 1.52 16 4 C -0.10 -2.30 5.17 30.62 0.16 -2.14 16 5 C -0.13 -2.76 6.06 30.53 0.19 -2.57 16 6 C 0.11 2.21 6.30 86.22 0.54 2.75 16 7 N -0.62 -19.12 2.92 -795.86 -2.33 -21.44 16 8 C 0.47 17.40 6.84 87.66 0.60 18.00 16 9 O -0.50 -24.11 7.68 -3.02 -0.02 -24.13 16 10 C -0.12 -3.36 3.57 29.85 0.11 -3.25 16 11 C -0.07 -2.12 1.84 -10.79 -0.02 -2.14 16 12 C -0.11 -3.36 4.95 30.60 0.15 -3.21 16 13 C -0.12 -3.59 5.92 30.59 0.18 -3.41 16 14 C -0.11 -2.51 5.92 30.59 0.18 -2.33 16 15 C -0.12 -2.87 5.92 30.58 0.18 -2.69 16 16 C -0.10 -2.44 5.20 30.58 0.16 -2.28 16 17 C 0.15 5.11 2.64 44.98 0.12 5.22 16 18 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 19 C 0.16 7.18 4.75 86.38 0.41 7.59 16 20 N -0.69 -37.94 2.99 -343.46 -1.03 -38.97 16 21 C -0.19 -11.73 9.42 84.03 0.79 -10.94 16 22 H 0.05 3.31 7.83 -2.91 -0.02 3.28 16 23 C -0.08 -5.32 5.50 84.86 0.47 -4.86 16 24 N -0.97 -64.06 13.06 21.65 0.28 -63.78 16 25 Si 0.95 51.48 29.55 68.60 2.03 53.51 16 26 H -0.30 -16.32 7.11 99.48 0.71 -15.61 16 27 H -0.30 -15.78 7.11 99.48 0.71 -15.08 16 28 H -0.27 -14.12 7.11 99.48 0.71 -13.41 16 29 H 0.03 1.22 6.67 -2.38 -0.02 1.20 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.10 1.64 5.96 -2.39 -0.01 1.62 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 2.35 7.49 -2.39 -0.02 2.33 16 39 H 0.12 2.35 8.11 -2.39 -0.02 2.33 16 40 H 0.02 1.04 7.96 -2.39 -0.02 1.02 16 41 H 0.04 1.81 5.95 -2.39 -0.01 1.79 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 47 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.00 0.21 6.75 -2.39 -0.02 0.20 16 52 H 0.03 1.23 6.24 -2.39 -0.01 1.22 16 53 H 0.37 21.53 5.87 -92.71 -0.54 20.99 16 54 H 0.24 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -78.25 390.76 4.07 -74.17 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: 0.31 Total: 33.25 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 4.84 Total: -12.61 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -3.07 Total: -124.19 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.02 Total: -24.13 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.03 Total: 53.51 kcal Total: -78.25 4.07 -74.17 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698944073.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.278 kcal (2) G-P(sol) polarization free energy of solvation -78.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds