Wall clock time and date at job start Tue Mar 31 2020 15:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47375 * 2 1 4 4 C 1.53003 * 109.47005 * 119.99963 * 2 1 3 5 5 C 1.52996 * 109.47346 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47006 * 300.00276 * 5 4 2 7 7 H 1.08999 * 109.47240 * 299.99328 * 6 5 4 8 8 C 1.50706 * 109.46912 * 179.97438 * 6 5 4 9 9 O 1.21280 * 120.00268 * 359.97438 * 8 6 5 10 10 N 1.34777 * 120.00082 * 180.02562 * 8 6 5 11 11 C 1.46496 * 120.00336 * 180.02562 * 10 8 6 12 12 H 1.09000 * 109.46684 * 324.99535 * 11 10 8 13 13 C 1.53002 * 109.47428 * 84.99288 * 11 10 8 14 14 C 1.52996 * 109.46972 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47165 * 300.00293 * 14 13 11 16 16 C 1.52999 * 109.47592 * 60.00300 * 15 14 13 17 17 C 1.52997 * 109.47079 * 204.99808 * 11 10 8 18 18 H 1.09000 * 109.47140 * 299.99448 * 17 11 10 19 19 C 1.52999 * 109.47269 * 59.99995 * 17 11 10 20 20 N 1.46500 * 109.47177 * 185.00061 * 19 17 11 21 21 C 1.36936 * 119.99904 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00414 * 359.97438 * 21 20 19 23 23 C 1.38820 * 120.00043 * 179.97438 * 21 20 19 24 24 N 1.31626 * 119.99652 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00187 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46993 * 60.00155 * 25 23 21 27 27 H 1.48499 * 109.47072 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47303 * 300.00239 * 25 23 21 29 29 C 1.52991 * 109.47547 * 59.99821 * 6 5 4 30 30 C 1.52995 * 109.47050 * 239.99657 * 2 1 3 31 31 H 1.09006 * 109.47232 * 300.00537 * 1 2 3 32 32 H 1.09002 * 109.47204 * 59.99752 * 1 2 3 33 33 H 1.09002 * 109.47375 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47024 * 59.99821 * 4 2 1 35 35 H 1.09007 * 109.47175 * 300.00083 * 4 2 1 36 36 H 1.08994 * 109.47148 * 179.97438 * 5 4 2 37 37 H 1.09002 * 109.47071 * 60.00015 * 5 4 2 38 38 H 0.97005 * 119.99682 * 359.97438 * 10 8 6 39 39 H 1.08992 * 109.46974 * 300.00496 * 13 11 10 40 40 H 1.08996 * 109.46550 * 60.00602 * 13 11 10 41 41 H 1.09000 * 109.47054 * 60.00300 * 14 13 11 42 42 H 1.09001 * 109.46997 * 180.02562 * 14 13 11 43 43 H 1.09000 * 109.47140 * 299.99954 * 15 14 13 44 44 H 1.09002 * 109.47045 * 180.02562 * 15 14 13 45 45 H 1.08993 * 109.47839 * 180.02562 * 16 15 14 46 46 H 1.09000 * 109.47160 * 59.99666 * 16 15 14 47 47 H 1.09000 * 109.46738 * 304.99766 * 19 17 11 48 48 H 1.08994 * 109.47465 * 64.99853 * 19 17 11 49 49 H 0.97003 * 120.00376 * 359.97438 * 20 19 17 50 50 H 0.96993 * 119.99659 * 180.02562 * 24 23 21 51 51 H 1.08999 * 109.47253 * 59.99515 * 29 6 5 52 52 H 1.08997 * 109.47385 * 179.97438 * 29 6 5 53 53 H 1.08999 * 109.47559 * 299.99924 * 30 2 1 54 54 H 1.09003 * 109.47335 * 60.00503 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5699 -0.7219 1.2490 6 6 4.0794 -1.4434 -0.0002 7 1 3.7157 -2.4710 0.0000 8 6 5.5864 -1.4435 -0.0007 9 8 6.1932 -0.9177 0.9083 10 7 6.2600 -2.0269 -1.0119 11 6 7.7249 -2.0274 -1.0122 12 1 8.0886 -1.0963 -0.5776 13 6 8.2347 -3.2095 -0.1853 14 6 9.7647 -3.2096 -0.1851 15 6 10.2748 -3.3347 -1.6221 16 6 9.7651 -2.1526 -2.4490 17 6 8.2346 -2.1528 -2.4493 18 1 7.8709 -3.0839 -2.8839 19 6 7.7249 -0.9707 -3.2762 20 7 8.1121 -1.1518 -4.6774 21 6 7.7627 -0.2130 -5.6111 22 1 7.2014 0.6607 -5.3146 23 6 8.1301 -0.3844 -6.9388 24 7 8.8138 -1.4495 -7.3002 25 14 7.6529 0.8959 -8.2126 26 1 8.2450 2.2066 -7.8429 27 1 8.1613 0.4818 -9.5450 28 1 6.1738 1.0173 -8.2625 29 6 3.5695 -0.7223 -1.2494 30 6 2.0399 -0.7213 -1.2492 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6766 -1.7489 1.2493 35 1 1.6766 -0.2074 2.1393 36 1 3.9332 -1.2353 2.1392 37 1 3.9336 0.3057 1.2488 38 1 5.7746 -2.4471 -1.7391 39 1 7.8716 -3.1201 0.8385 40 1 7.8710 -4.1405 -0.6199 41 1 10.1280 -2.2785 0.2497 42 1 10.1279 -4.0520 0.4036 43 1 9.9115 -4.2658 -2.0569 44 1 11.3648 -3.3352 -1.6219 45 1 10.1281 -2.2419 -3.4728 46 1 10.1285 -1.2215 -2.0142 47 1 6.6386 -0.9179 -3.2033 48 1 8.1598 -0.0466 -2.8956 49 1 8.6159 -1.9367 -4.9439 50 1 9.0707 -1.5690 -8.2278 51 1 3.9331 0.3053 -1.2496 52 1 3.9328 -1.2361 -2.1394 53 1 1.6766 -1.7490 -1.2492 54 1 1.6767 -0.2075 -2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699486254.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:49 Heat of formation + Delta-G solvation = -99.338521 kcal Electronic energy + Delta-G solvation = -28728.811886 eV Core-core repulsion = 25083.368751 eV Total energy + Delta-G solvation = -3645.443135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 4.22 seconds Orbital eigenvalues (eV) -41.50100 -39.93530 -38.62655 -36.42436 -35.23037 -33.73283 -33.62636 -31.69477 -31.22687 -30.42893 -27.74043 -26.85391 -24.73460 -23.98553 -23.54711 -22.51424 -21.99572 -21.29981 -20.80423 -20.43111 -19.26330 -18.02937 -17.32548 -16.73898 -16.43154 -16.02218 -15.57998 -15.40390 -15.26804 -15.16338 -15.11163 -14.96046 -14.81780 -14.52800 -14.13969 -14.11999 -13.65084 -13.42823 -13.32087 -13.12622 -13.07035 -12.92303 -12.72739 -12.68879 -12.36236 -12.22897 -12.12976 -12.00648 -11.94385 -11.88793 -11.85844 -11.59123 -11.48225 -11.34282 -11.24279 -11.12615 -10.93975 -10.90285 -10.54840 -9.95965 -8.98927 -7.95212 -5.23381 1.46626 1.48995 1.55258 1.67165 2.23803 2.55378 3.37974 3.53689 3.64415 3.71333 3.74939 3.80573 3.92696 4.08864 4.15354 4.17417 4.21740 4.28240 4.38987 4.44347 4.45701 4.49530 4.51297 4.54233 4.56858 4.58744 4.64524 4.84332 4.84785 4.87949 4.94452 5.00775 5.03516 5.05345 5.11212 5.15727 5.16666 5.20824 5.24114 5.27252 5.29056 5.30823 5.33578 5.42860 5.43254 5.46361 5.47636 5.51827 5.60829 5.63817 6.26998 6.59262 7.28799 7.34131 8.09105 8.34360 9.27814 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.008705 B = 0.003876 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.859937 B = 7221.808835 C =10096.828932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.058 0.942 4 C -0.106 4.106 5 C -0.095 4.095 6 C -0.097 4.097 7 H 0.119 0.881 8 C 0.514 3.486 9 O -0.584 6.584 10 N -0.715 5.715 11 C 0.161 3.839 12 H 0.062 0.938 13 C -0.117 4.117 14 C -0.111 4.111 15 C -0.113 4.113 16 C -0.105 4.105 17 C -0.084 4.084 18 H 0.079 0.921 19 C 0.162 3.838 20 N -0.738 5.738 21 C -0.247 4.247 22 H 0.069 0.931 23 C -0.069 4.069 24 N -0.966 5.966 25 Si 0.969 3.031 26 H -0.282 1.282 27 H -0.293 1.293 28 H -0.277 1.277 29 C -0.110 4.110 30 C -0.108 4.108 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.409 0.591 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.024 0.976 48 H 0.001 0.999 49 H 0.376 0.624 50 H 0.252 0.748 51 H 0.048 0.952 52 H 0.070 0.930 53 H 0.078 0.922 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.206 -4.976 18.025 22.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.076 0.924 4 C -0.144 4.144 5 C -0.133 4.133 6 C -0.118 4.118 7 H 0.137 0.863 8 C 0.302 3.698 9 O -0.464 6.464 10 N -0.365 5.365 11 C 0.056 3.944 12 H 0.080 0.920 13 C -0.156 4.156 14 C -0.149 4.149 15 C -0.151 4.151 16 C -0.144 4.144 17 C -0.104 4.104 18 H 0.097 0.903 19 C 0.035 3.965 20 N -0.382 5.382 21 C -0.379 4.379 22 H 0.087 0.913 23 C -0.262 4.262 24 N -0.616 5.616 25 Si 0.798 3.202 26 H -0.208 1.208 27 H -0.219 1.219 28 H -0.203 1.203 29 C -0.148 4.148 30 C -0.145 4.145 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.245 0.755 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.042 0.958 48 H 0.019 0.981 49 H 0.209 0.791 50 H 0.061 0.939 51 H 0.067 0.933 52 H 0.088 0.912 53 H 0.097 0.903 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.858 -4.443 18.604 22.504 hybrid contribution 0.195 0.586 -1.487 1.610 sum -11.663 -3.857 17.116 21.068 Atomic orbital electron populations 1.21797 0.94168 1.02313 1.01847 1.21173 0.96236 0.99184 0.94839 0.92374 1.21578 0.93367 1.01571 0.97842 1.21290 0.96283 0.99897 0.95879 1.21364 0.89074 1.03290 0.98047 0.86325 1.21221 0.91194 0.76406 0.80956 1.90652 1.71428 1.46769 1.37533 1.46116 1.07035 1.58107 1.25259 1.20809 0.79624 0.99244 0.94761 0.91960 1.21813 0.96531 0.97792 0.99422 1.21472 0.94224 1.02483 0.96686 1.21535 1.00816 0.97724 0.94999 1.21446 0.93727 0.99084 1.00107 1.21433 0.96668 0.98680 0.93589 0.90255 1.20740 0.96555 0.95343 0.83871 1.42495 1.66760 1.25666 1.03232 1.19532 1.28014 1.01171 0.89198 0.91305 1.25483 1.01588 1.00016 0.99092 1.69792 1.44919 1.29960 1.16967 0.85281 0.78008 0.78621 0.78277 1.20822 1.21924 1.20281 1.21507 0.97395 1.00044 0.95864 1.21559 0.93246 1.01788 0.97942 0.92346 0.92741 0.91936 0.90574 0.91136 0.91989 0.93397 0.75453 0.92334 0.90613 0.92463 0.89888 0.91310 0.91008 0.93054 0.92924 0.95771 0.98120 0.79092 0.93936 0.93280 0.91159 0.90324 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.19 71.98 0.66 -1.09 16 2 C -0.10 -1.43 2.72 -10.80 -0.03 -1.46 16 3 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 4 C -0.11 -1.54 5.20 30.59 0.16 -1.38 16 5 C -0.10 -1.89 4.49 30.59 0.14 -1.76 16 6 C -0.10 -1.91 2.53 -11.54 -0.03 -1.94 16 7 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 8 C 0.51 13.76 7.12 87.66 0.62 14.39 16 9 O -0.58 -20.10 15.64 -3.03 -0.05 -20.15 16 10 N -0.71 -17.96 4.20 -442.54 -1.86 -19.82 16 11 C 0.16 4.46 1.90 44.99 0.09 4.55 16 12 H 0.06 2.06 7.58 -2.39 -0.02 2.04 16 13 C -0.12 -2.72 5.49 30.59 0.17 -2.55 16 14 C -0.11 -2.37 5.92 30.59 0.18 -2.19 16 15 C -0.11 -2.68 5.92 30.59 0.18 -2.50 16 16 C -0.11 -3.27 5.08 30.61 0.16 -3.12 16 17 C -0.08 -2.64 1.81 -10.78 -0.02 -2.66 16 18 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 19 C 0.16 6.50 5.56 86.38 0.48 6.98 16 20 N -0.74 -37.13 5.33 -343.45 -1.83 -38.96 16 21 C -0.25 -13.86 9.99 84.04 0.84 -13.02 16 22 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 23 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 24 N -0.97 -58.41 13.06 21.65 0.28 -58.13 16 25 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 26 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 27 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 28 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 29 C -0.11 -2.17 5.10 30.58 0.16 -2.01 16 30 C -0.11 -1.69 5.20 30.58 0.16 -1.53 16 31 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 37 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 38 H 0.41 8.97 7.81 -92.70 -0.72 8.24 16 39 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.05 1.88 7.18 -2.39 -0.02 1.86 16 46 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.02 0.96 7.31 -2.39 -0.02 0.94 16 48 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 49 H 0.38 19.88 6.85 -92.71 -0.64 19.25 16 50 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 51 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 52 H 0.07 1.40 7.56 -2.39 -0.02 1.38 16 53 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 54 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -67.24 409.16 2.44 -64.80 By element: Atomic # 1 Polarization: 39.49 SS G_CDS: -0.51 Total: 38.98 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 4.38 Total: -14.78 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -3.40 Total: -116.91 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.05 Total: -20.15 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -67.24 2.44 -64.80 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699486254.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.542 kcal (2) G-P(sol) polarization free energy of solvation -67.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.22 seconds