Wall clock time and date at job start Tue Mar 31 2020 15:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47319 * 2 1 4 4 C 1.53004 * 109.46759 * 119.99533 * 2 1 3 5 5 C 1.53001 * 109.46969 * 179.97438 * 4 2 1 6 6 C 1.52993 * 109.47385 * 300.00190 * 5 4 2 7 7 H 1.09008 * 109.47047 * 299.99898 * 6 5 4 8 8 C 1.50695 * 109.47590 * 180.02562 * 6 5 4 9 9 O 1.21287 * 120.00326 * 240.00037 * 8 6 5 10 10 N 1.34781 * 120.00202 * 59.99302 * 8 6 5 11 11 C 1.46500 * 120.00359 * 180.02562 * 10 8 6 12 12 H 1.09006 * 109.46588 * 35.00498 * 11 10 8 13 13 C 1.52993 * 109.47021 * 275.00491 * 11 10 8 14 14 C 1.53001 * 109.47417 * 299.99649 * 13 11 10 15 15 C 1.52998 * 109.46854 * 300.00393 * 14 13 11 16 16 C 1.52999 * 109.47183 * 60.00041 * 15 14 13 17 17 C 1.52998 * 109.47273 * 155.00085 * 11 10 8 18 18 H 1.09001 * 109.47284 * 180.02562 * 17 11 10 19 19 C 1.52999 * 109.47183 * 300.00583 * 17 11 10 20 20 N 1.46496 * 109.47119 * 185.00044 * 19 17 11 21 21 C 1.36935 * 120.00221 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00176 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.00382 * 179.97438 * 21 20 19 24 24 N 1.31618 * 120.00240 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99684 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46845 * 90.00337 * 25 23 21 27 27 H 1.48503 * 109.47399 * 209.99827 * 25 23 21 28 28 H 1.48498 * 109.47295 * 330.00433 * 25 23 21 29 29 C 1.53001 * 109.47157 * 59.99590 * 6 5 4 30 30 C 1.52994 * 109.47323 * 239.99038 * 2 1 3 31 31 H 1.08997 * 109.46892 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46767 * 300.00640 * 1 2 3 33 33 H 1.08993 * 109.46441 * 60.00447 * 1 2 3 34 34 H 1.08998 * 109.47446 * 300.00004 * 4 2 1 35 35 H 1.08997 * 109.47563 * 60.00233 * 4 2 1 36 36 H 1.09003 * 109.47290 * 179.97438 * 5 4 2 37 37 H 1.09008 * 109.46945 * 60.00150 * 5 4 2 38 38 H 0.96997 * 119.99727 * 0.02562 * 10 8 6 39 39 H 1.09005 * 109.47501 * 59.99853 * 13 11 10 40 40 H 1.09000 * 109.47328 * 179.97438 * 13 11 10 41 41 H 1.09001 * 109.46864 * 60.00269 * 14 13 11 42 42 H 1.08998 * 109.47515 * 180.02562 * 14 13 11 43 43 H 1.09001 * 109.46792 * 179.97438 * 15 14 13 44 44 H 1.09001 * 109.47284 * 299.99620 * 15 14 13 45 45 H 1.09004 * 109.47274 * 180.02562 * 16 15 14 46 46 H 1.09000 * 109.47800 * 59.99914 * 16 15 14 47 47 H 1.08998 * 109.47493 * 64.99815 * 19 17 11 48 48 H 1.09009 * 109.46622 * 304.99605 * 19 17 11 49 49 H 0.97000 * 120.00132 * 359.97438 * 20 19 17 50 50 H 0.97000 * 119.99717 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.46965 * 60.00825 * 29 6 5 52 52 H 1.09001 * 109.46893 * 180.02562 * 29 6 5 53 53 H 1.09003 * 109.46899 * 60.00065 * 30 2 1 54 54 H 1.08996 * 109.47709 * 300.00723 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5700 -0.7218 1.2491 6 6 4.0796 -1.4434 0.0000 7 1 3.7158 -2.4710 0.0002 8 6 5.5865 -1.4446 0.0000 9 8 6.1934 -0.9199 -0.9097 10 7 6.2600 -2.0285 1.0109 11 6 7.7250 -2.0292 1.0112 12 1 8.0888 -1.0978 0.5771 13 6 8.2346 -3.2109 0.1838 14 6 7.7240 -4.5181 0.7932 15 6 8.2336 -4.6442 2.2302 16 6 7.7239 -3.4624 3.0577 17 6 8.2347 -2.1552 2.4483 18 1 9.3247 -2.1552 2.4486 19 6 7.7249 -0.9735 3.2757 20 7 8.3088 -1.0294 4.6181 21 6 7.9959 -0.0677 5.5414 22 1 7.3184 0.7317 5.2801 23 6 8.5487 -0.1209 6.8136 24 7 8.2476 0.8032 7.7012 25 14 9.7189 -1.5048 7.2663 26 1 11.1116 -1.0993 6.9482 27 1 9.6068 -1.7927 8.7189 28 1 9.3687 -2.7224 6.4918 29 6 3.5696 -0.7223 -1.2494 30 6 2.0401 -0.7214 -1.2491 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3632 0.5137 -0.8900 34 1 1.6767 -0.2073 2.1393 35 1 1.6767 -1.7488 1.2495 36 1 3.9333 -1.2351 2.1394 37 1 3.9337 0.3058 1.2488 38 1 5.7747 -2.4484 1.7383 39 1 7.8715 -3.1211 -0.8400 40 1 9.3246 -3.2111 0.1837 41 1 6.6340 -4.5177 0.7929 42 1 8.0874 -5.3600 0.2040 43 1 7.8695 -5.5752 2.6645 44 1 9.3237 -4.6446 2.2305 45 1 8.0874 -3.5520 4.0814 46 1 6.6339 -3.4620 3.0575 47 1 6.6386 -1.0234 3.3496 48 1 8.0138 -0.0401 2.7924 49 1 8.9170 -1.7475 4.8530 50 1 8.6342 0.7661 8.5901 51 1 3.9333 0.3052 -1.2497 52 1 3.9322 -1.2367 -2.1393 53 1 1.6768 -0.2077 -2.1391 54 1 1.6768 -1.7490 -1.2491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699486255.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:07 Heat of formation + Delta-G solvation = -93.450014 kcal Electronic energy + Delta-G solvation = -29072.471266 eV Core-core repulsion = 25427.283475 eV Total energy + Delta-G solvation = -3645.187790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -41.63649 -40.01309 -38.59164 -36.61685 -34.75075 -33.87430 -33.61453 -31.71168 -31.62036 -30.77011 -27.81087 -26.96487 -24.41611 -23.83729 -23.54702 -22.99741 -22.10510 -21.37736 -20.61558 -20.03816 -19.69698 -18.25824 -16.92595 -16.72282 -16.48406 -16.24839 -15.69573 -15.65104 -15.23703 -15.17993 -15.10147 -14.97909 -14.73177 -14.61746 -14.19808 -14.02813 -13.82741 -13.47952 -13.20406 -13.09902 -13.07623 -13.03164 -12.91609 -12.73968 -12.57298 -12.33411 -12.16066 -12.00999 -11.91726 -11.88319 -11.85259 -11.57148 -11.42588 -11.26064 -11.19365 -11.06251 -10.91913 -10.89165 -10.59924 -9.95620 -9.30451 -8.03544 -5.37420 1.36658 1.41229 1.48511 1.69112 2.27474 2.47779 3.27754 3.42786 3.64690 3.71605 3.74572 3.78102 3.82391 3.93688 4.15623 4.17293 4.20886 4.25930 4.31682 4.44151 4.45047 4.47179 4.52486 4.56253 4.58690 4.64083 4.67195 4.72569 4.84599 4.89305 4.94350 5.00265 5.00882 5.05369 5.07135 5.14433 5.16670 5.20922 5.25501 5.27212 5.28430 5.33046 5.35095 5.43042 5.44076 5.46677 5.50752 5.60799 5.64568 5.73878 6.20002 6.60404 7.07005 7.30842 7.82064 8.03109 9.18163 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011389 B = 0.003630 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.835713 B = 7712.161660 C = 9440.219222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.056 0.944 4 C -0.108 4.108 5 C -0.111 4.111 6 C -0.096 4.096 7 H 0.120 0.880 8 C 0.514 3.486 9 O -0.584 6.584 10 N -0.709 5.709 11 C 0.160 3.840 12 H 0.062 0.938 13 C -0.121 4.121 14 C -0.109 4.109 15 C -0.114 4.114 16 C -0.110 4.110 17 C -0.093 4.093 18 H 0.085 0.915 19 C 0.165 3.835 20 N -0.753 5.753 21 C -0.236 4.236 22 H 0.050 0.950 23 C -0.063 4.063 24 N -0.985 5.985 25 Si 0.956 3.044 26 H -0.280 1.280 27 H -0.295 1.295 28 H -0.245 1.245 29 C -0.096 4.096 30 C -0.106 4.106 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.408 0.592 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.028 0.972 48 H 0.005 0.995 49 H 0.368 0.632 50 H 0.258 0.742 51 H 0.045 0.955 52 H 0.062 0.938 53 H 0.069 0.931 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.666 -13.514 -18.945 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.074 0.926 4 C -0.145 4.145 5 C -0.149 4.149 6 C -0.117 4.117 7 H 0.138 0.862 8 C 0.302 3.698 9 O -0.465 6.465 10 N -0.361 5.361 11 C 0.054 3.946 12 H 0.080 0.920 13 C -0.159 4.159 14 C -0.146 4.146 15 C -0.152 4.152 16 C -0.148 4.148 17 C -0.112 4.112 18 H 0.103 0.897 19 C 0.039 3.961 20 N -0.399 5.399 21 C -0.367 4.367 22 H 0.069 0.931 23 C -0.255 4.255 24 N -0.635 5.635 25 Si 0.783 3.217 26 H -0.207 1.207 27 H -0.222 1.222 28 H -0.169 1.169 29 C -0.134 4.134 30 C -0.143 4.143 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.245 0.755 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.046 0.954 48 H 0.023 0.977 49 H 0.202 0.798 50 H 0.067 0.933 51 H 0.064 0.936 52 H 0.081 0.919 53 H 0.088 0.912 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.341 -12.962 -19.516 26.029 hybrid contribution 0.792 0.100 1.176 1.422 sum -10.549 -12.862 -18.340 24.760 Atomic orbital electron populations 1.21795 0.94162 1.02352 1.01807 1.21177 0.96253 0.99136 0.94931 0.92570 1.21567 0.93260 1.01841 0.97866 1.21518 0.97396 0.99993 0.95945 1.21354 0.89240 1.03264 0.97880 0.86193 1.21195 0.91140 0.76436 0.81079 1.90658 1.71398 1.46815 1.37586 1.46097 1.06922 1.57931 1.25131 1.20764 0.80159 0.99006 0.94657 0.91953 1.21829 1.01271 0.94446 0.98399 1.21449 1.00964 0.96531 0.95661 1.21542 1.01072 0.97549 0.94999 1.21538 1.00907 0.93346 0.99005 1.21533 1.01280 0.95173 0.93211 0.89680 1.20715 0.96004 0.95587 0.83824 1.42655 1.56285 1.30332 1.10604 1.18997 1.21934 1.03394 0.92373 0.93149 1.25533 1.02618 1.01231 0.96092 1.69896 1.49909 1.37866 1.05833 0.85399 0.78942 0.80276 0.77104 1.20669 1.22188 1.16903 1.21281 0.96265 0.99852 0.95975 1.21561 0.93406 1.01592 0.97756 0.91820 0.92812 0.92391 0.91720 0.90123 0.91099 0.93505 0.75460 0.92488 0.90438 0.91712 0.90723 0.90633 0.91692 0.92755 0.91430 0.95398 0.97662 0.79842 0.93314 0.93567 0.91932 0.91232 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.19 71.98 0.66 -1.11 16 2 C -0.10 -1.46 2.72 -10.79 -0.03 -1.49 16 3 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.11 -1.68 5.20 30.60 0.16 -1.52 16 5 C -0.11 -2.15 5.10 30.59 0.16 -1.99 16 6 C -0.10 -1.83 2.52 -11.54 -0.03 -1.86 16 7 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 8 C 0.51 13.16 7.12 87.65 0.62 13.78 16 9 O -0.58 -19.63 15.65 -3.05 -0.05 -19.68 16 10 N -0.71 -16.39 3.51 -442.53 -1.55 -17.94 16 11 C 0.16 4.05 2.23 44.99 0.10 4.15 16 12 H 0.06 1.92 7.58 -2.38 -0.02 1.90 16 13 C -0.12 -2.51 5.60 30.59 0.17 -2.34 16 14 C -0.11 -1.81 5.77 30.59 0.18 -1.64 16 15 C -0.11 -2.06 5.92 30.59 0.18 -1.87 16 16 C -0.11 -2.62 4.90 30.60 0.15 -2.47 16 17 C -0.09 -2.56 2.02 -10.79 -0.02 -2.58 16 18 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 19 C 0.16 6.22 5.42 86.38 0.47 6.69 16 20 N -0.75 -34.69 5.13 -343.45 -1.76 -36.46 16 21 C -0.24 -13.57 10.47 84.03 0.88 -12.69 16 22 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 23 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 24 N -0.98 -63.44 13.97 21.65 0.30 -63.13 16 25 Si 0.96 44.89 27.73 68.60 1.90 46.79 16 26 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 27 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 28 H -0.24 -10.08 6.52 99.48 0.65 -9.43 16 29 C -0.10 -1.87 4.49 30.58 0.14 -1.73 16 30 C -0.11 -1.52 5.20 30.57 0.16 -1.36 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.36 7.57 -2.39 -0.02 1.34 16 37 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.41 8.13 6.09 -92.71 -0.56 7.56 16 39 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.06 1.04 7.60 -2.39 -0.02 1.03 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 44 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.05 1.52 7.18 -2.38 -0.02 1.50 16 46 H 0.07 1.48 6.51 -2.39 -0.02 1.46 16 47 H 0.03 1.05 7.61 -2.39 -0.02 1.03 16 48 H 0.01 0.22 8.14 -2.38 -0.02 0.20 16 49 H 0.37 15.90 4.71 -92.71 -0.44 15.47 16 50 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 51 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 52 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 53 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 54 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -71.69 401.94 3.05 -68.65 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: -0.21 Total: 35.07 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 4.41 Total: -13.30 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -3.01 Total: -117.53 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.05 Total: -19.68 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.79 kcal Total: -71.69 3.05 -68.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699486255.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.803 kcal (2) G-P(sol) polarization free energy of solvation -71.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds