Wall clock time and date at job start Tue Mar 31 2020 15:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47347 * 120.00118 * 2 1 3 5 5 C 1.52997 * 109.47347 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47383 * 300.00045 * 5 4 2 7 7 H 1.08993 * 109.46829 * 300.00333 * 6 5 4 8 8 C 1.50695 * 109.47330 * 179.97438 * 6 5 4 9 9 O 1.21279 * 120.00679 * 240.00203 * 8 6 5 10 10 N 1.34778 * 119.99739 * 60.00087 * 8 6 5 11 11 C 1.46504 * 120.00273 * 179.97438 * 10 8 6 12 12 H 1.09002 * 109.46910 * 325.00266 * 11 10 8 13 13 C 1.52999 * 109.47050 * 84.99599 * 11 10 8 14 14 C 1.53006 * 109.46626 * 60.00640 * 13 11 10 15 15 C 1.52997 * 109.47164 * 59.99702 * 14 13 11 16 16 C 1.53002 * 109.47415 * 300.00027 * 15 14 13 17 17 C 1.52996 * 109.46972 * 59.99860 * 16 15 14 18 18 H 1.09000 * 109.47054 * 60.00300 * 17 16 15 19 19 C 1.53002 * 109.46969 * 180.02562 * 17 16 15 20 20 N 1.46500 * 109.47026 * 294.99885 * 19 17 16 21 21 C 1.36934 * 120.00467 * 179.97438 * 20 19 17 22 22 H 1.08009 * 119.99542 * 0.02562 * 21 20 19 23 23 C 1.38807 * 120.00390 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99826 * 180.02562 * 23 21 20 25 25 Si 1.86793 * 120.00133 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47225 * 90.00020 * 25 23 21 27 27 H 1.48502 * 109.47149 * 210.00260 * 25 23 21 28 28 H 1.48500 * 109.47315 * 329.99840 * 25 23 21 29 29 C 1.52997 * 109.46915 * 59.99691 * 6 5 4 30 30 C 1.52997 * 109.47347 * 300.00331 * 29 6 5 31 31 H 1.09005 * 109.46998 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47103 * 299.99690 * 1 2 3 33 33 H 1.08997 * 109.47072 * 60.00315 * 1 2 3 34 34 H 1.08999 * 109.47176 * 300.00148 * 4 2 1 35 35 H 1.09005 * 109.47168 * 59.99986 * 4 2 1 36 36 H 1.09005 * 109.47389 * 179.97438 * 5 4 2 37 37 H 1.09003 * 109.47487 * 60.00064 * 5 4 2 38 38 H 0.97007 * 120.00235 * 0.02562 * 10 8 6 39 39 H 1.08993 * 109.47839 * 300.00709 * 13 11 10 40 40 H 1.09000 * 109.47160 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.46998 * 179.97438 * 14 13 11 42 42 H 1.09000 * 109.47050 * 299.99699 * 14 13 11 43 43 H 1.09000 * 109.47140 * 60.00051 * 15 14 13 44 44 H 1.09001 * 109.47230 * 179.97438 * 15 14 13 45 45 H 1.08992 * 109.46974 * 180.02562 * 16 15 14 46 46 H 1.08996 * 109.46550 * 300.00288 * 16 15 14 47 47 H 1.08994 * 109.47265 * 54.99878 * 19 17 16 48 48 H 1.09000 * 109.47089 * 175.00057 * 19 17 16 49 49 H 0.97008 * 119.99895 * 359.97438 * 20 19 17 50 50 H 0.97001 * 119.99854 * 179.97438 * 24 23 21 51 51 H 1.09005 * 109.47168 * 60.00346 * 29 6 5 52 52 H 1.08999 * 109.47176 * 180.02562 * 29 6 5 53 53 H 1.09000 * 109.47386 * 179.97438 * 30 29 6 54 54 H 1.09003 * 109.47487 * 299.99936 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0806 -1.4415 0.0002 7 1 3.7176 -2.4693 0.0000 8 6 5.5875 -1.4404 0.0002 9 8 6.1937 -0.9148 -0.9092 10 7 6.2618 -2.0236 1.0111 11 6 7.7268 -2.0231 1.0109 12 1 8.0901 -2.1127 -0.0129 13 6 8.2364 -0.7154 1.6202 14 6 7.7266 -0.5897 3.0573 15 6 8.2371 -1.7710 3.8847 16 6 7.7276 -3.0787 3.2754 17 6 8.2374 -3.2044 1.8384 18 1 9.3274 -3.2040 1.8382 19 6 7.7273 -4.5118 1.2288 20 7 8.3116 -5.6465 1.9480 21 6 7.9978 -6.9269 1.5776 22 1 7.3198 -7.1002 0.7549 23 6 8.5510 -8.0020 2.2594 24 7 8.2497 -9.2327 1.9029 25 14 9.7230 -7.7023 3.6826 26 1 8.9521 -7.6156 4.9489 27 1 10.6932 -8.8233 3.7695 28 1 10.4557 -6.4298 3.4610 29 6 3.5706 -0.7203 -1.2490 30 6 2.0406 -0.7208 -1.2493 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6767 -0.2075 2.1392 35 1 1.6767 -1.7490 1.2492 36 1 3.9334 -1.2342 2.1397 37 1 3.9330 0.3071 1.2498 38 1 5.7771 -2.4444 1.7384 39 1 7.8727 0.1262 1.0307 40 1 9.3264 -0.7148 1.6197 41 1 8.0900 0.3417 3.4916 42 1 6.6366 -0.5901 3.0575 43 1 9.3271 -1.7706 3.8846 44 1 7.8743 -1.6812 4.9087 45 1 8.0910 -3.9201 3.8652 46 1 6.6376 -3.0790 3.2756 47 1 6.6411 -4.5508 1.3096 48 1 8.0156 -4.5598 0.1787 49 1 8.9209 -5.4908 2.6867 50 1 8.6365 -9.9841 2.3791 51 1 3.9335 0.3076 -1.2487 52 1 3.9339 -1.2341 -2.1390 53 1 1.6772 -0.2066 -2.1390 54 1 1.6775 -1.7486 -1.2495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699486256.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:18 Heat of formation + Delta-G solvation = -93.498981 kcal Electronic energy + Delta-G solvation = -28996.400714 eV Core-core repulsion = 25351.210800 eV Total energy + Delta-G solvation = -3645.189914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.63905 -40.00339 -38.58572 -36.61920 -34.74166 -33.88131 -33.60760 -31.72895 -31.59515 -30.76563 -27.80811 -26.96496 -24.41276 -23.83392 -23.52564 -23.00832 -22.10122 -21.37473 -20.60754 -20.04037 -19.69460 -18.25770 -17.00809 -16.63559 -16.46814 -16.22989 -15.77687 -15.54817 -15.36804 -15.16672 -15.08009 -14.95551 -14.71389 -14.54560 -14.20654 -14.06225 -13.79634 -13.51099 -13.16518 -13.12856 -13.05612 -13.01497 -12.93025 -12.72498 -12.58986 -12.32928 -12.13441 -11.99948 -11.93741 -11.87447 -11.85822 -11.56930 -11.42070 -11.24163 -11.20023 -11.05835 -10.91449 -10.89196 -10.58654 -9.95893 -9.30758 -8.03893 -5.37816 1.36824 1.41112 1.48465 1.69871 2.26782 2.47597 3.27283 3.42797 3.64061 3.72587 3.76064 3.78782 3.82510 3.93669 4.14759 4.18342 4.22275 4.27552 4.32025 4.44608 4.46219 4.47537 4.52727 4.56741 4.59547 4.65429 4.67897 4.72725 4.85177 4.89246 4.95235 5.00408 5.01808 5.06540 5.07550 5.15250 5.16582 5.21204 5.25903 5.27399 5.28777 5.33357 5.35596 5.43832 5.44430 5.46142 5.51423 5.61758 5.64858 5.73552 6.19812 6.60421 7.06679 7.30820 7.81782 8.02811 9.17897 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.003203 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.961624 B = 8739.518558 C = 9686.529669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.110 4.110 5 C -0.103 4.103 6 C -0.103 4.103 7 H 0.102 0.898 8 C 0.515 3.485 9 O -0.585 6.585 10 N -0.708 5.708 11 C 0.160 3.840 12 H 0.062 0.938 13 C -0.121 4.121 14 C -0.108 4.108 15 C -0.114 4.114 16 C -0.111 4.111 17 C -0.092 4.092 18 H 0.084 0.916 19 C 0.164 3.836 20 N -0.753 5.753 21 C -0.236 4.236 22 H 0.051 0.949 23 C -0.064 4.064 24 N -0.985 5.985 25 Si 0.957 3.043 26 H -0.272 1.272 27 H -0.297 1.297 28 H -0.251 1.251 29 C -0.095 4.095 30 C -0.110 4.110 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.408 0.592 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.055 0.945 46 H 0.068 0.932 47 H 0.028 0.972 48 H 0.005 0.995 49 H 0.368 0.632 50 H 0.258 0.742 51 H 0.057 0.943 52 H 0.050 0.950 53 H 0.068 0.932 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.488 24.857 3.334 27.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.148 4.148 5 C -0.141 4.141 6 C -0.125 4.125 7 H 0.120 0.880 8 C 0.303 3.697 9 O -0.465 6.465 10 N -0.361 5.361 11 C 0.054 3.946 12 H 0.080 0.920 13 C -0.159 4.159 14 C -0.146 4.146 15 C -0.152 4.152 16 C -0.148 4.148 17 C -0.111 4.111 18 H 0.102 0.898 19 C 0.038 3.962 20 N -0.399 5.399 21 C -0.367 4.367 22 H 0.069 0.931 23 C -0.256 4.256 24 N -0.636 5.636 25 Si 0.784 3.216 26 H -0.198 1.198 27 H -0.224 1.224 28 H -0.175 1.175 29 C -0.133 4.133 30 C -0.148 4.148 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.246 0.754 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.046 0.954 48 H 0.024 0.976 49 H 0.202 0.798 50 H 0.067 0.933 51 H 0.076 0.924 52 H 0.068 0.932 53 H 0.087 0.913 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.159 25.076 2.567 27.566 hybrid contribution 0.727 -1.003 0.471 1.325 sum -10.432 24.073 3.038 26.412 Atomic orbital electron populations 1.21808 0.94460 1.02011 1.02003 1.21156 0.95995 0.99433 0.94534 0.91427 1.21590 0.93721 1.01380 0.98085 1.21497 0.96912 1.00458 0.95211 1.21391 0.89386 1.02818 0.98866 0.87955 1.21159 0.91063 0.76724 0.80797 1.90655 1.71427 1.46973 1.37421 1.46094 1.06908 1.57769 1.25282 1.20764 0.80145 0.94805 0.98862 0.91955 1.21823 1.01218 0.95843 0.97026 1.21450 1.01024 0.98417 0.93703 1.21541 1.01043 0.93250 0.99324 1.21537 1.00966 0.98346 0.93976 1.21524 1.01218 0.92333 0.96074 0.89781 1.20726 0.96019 0.85901 0.93578 1.42663 1.55943 1.01698 1.39584 1.19006 1.21803 0.83504 1.12412 0.93125 1.25544 1.02622 0.94570 1.02821 1.69899 1.49944 0.98479 1.45236 0.85379 0.78913 0.77717 0.79611 1.19827 1.22420 1.17514 1.21272 0.96140 1.00148 0.95719 1.21602 0.93560 1.01214 0.98406 0.92627 0.92106 0.92569 0.90443 0.91405 0.90388 0.91747 0.75441 0.92572 0.90507 0.90784 0.91614 0.91758 0.90550 0.92650 0.91355 0.95352 0.97647 0.79832 0.93294 0.92399 0.93157 0.91331 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.19 71.98 0.66 -0.89 16 2 C -0.09 -1.17 2.72 -10.79 -0.03 -1.20 16 3 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 4 C -0.11 -1.32 5.20 30.59 0.16 -1.17 16 5 C -0.10 -1.47 5.10 30.59 0.16 -1.31 16 6 C -0.10 -2.00 2.53 -11.54 -0.03 -2.03 16 7 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 8 C 0.51 13.23 7.12 87.66 0.62 13.85 16 9 O -0.58 -19.69 15.64 -3.03 -0.05 -19.74 16 10 N -0.71 -16.35 3.51 -442.54 -1.55 -17.90 16 11 C 0.16 4.04 2.23 44.99 0.10 4.14 16 12 H 0.06 1.92 7.58 -2.39 -0.02 1.90 16 13 C -0.12 -2.51 5.60 30.60 0.17 -2.34 16 14 C -0.11 -1.80 5.77 30.60 0.18 -1.62 16 15 C -0.11 -2.03 5.92 30.59 0.18 -1.85 16 16 C -0.11 -2.59 4.90 30.59 0.15 -2.44 16 17 C -0.09 -2.54 2.02 -10.80 -0.02 -2.56 16 18 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 19 C 0.16 6.19 5.42 86.38 0.47 6.65 16 20 N -0.75 -34.74 5.13 -343.45 -1.76 -36.50 16 21 C -0.24 -13.60 10.47 84.03 0.88 -12.72 16 22 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 23 C -0.06 -3.79 5.50 84.86 0.47 -3.33 16 24 N -0.99 -63.53 13.97 21.65 0.30 -63.23 16 25 Si 0.96 44.93 27.74 68.60 1.90 46.83 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 27 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 28 H -0.25 -10.54 6.52 99.48 0.65 -9.89 16 29 C -0.09 -1.89 4.49 30.59 0.14 -1.76 16 30 C -0.11 -1.66 5.21 30.59 0.16 -1.50 16 31 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.08 0.95 7.57 -2.38 -0.02 0.94 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.41 8.08 6.08 -92.70 -0.56 7.52 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 1.04 7.60 -2.39 -0.02 1.02 16 43 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.05 1.51 7.18 -2.39 -0.02 1.49 16 46 H 0.07 1.47 6.51 -2.39 -0.02 1.45 16 47 H 0.03 1.07 7.60 -2.39 -0.02 1.05 16 48 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 49 H 0.37 15.93 4.71 -92.70 -0.44 15.49 16 50 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 51 H 0.06 1.26 8.10 -2.38 -0.02 1.24 16 52 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 53 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 54 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -71.61 401.93 3.05 -68.57 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: -0.21 Total: 34.04 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 4.41 Total: -12.07 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -3.01 Total: -117.63 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.05 Total: -19.74 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.90 Total: 46.83 kcal Total: -71.61 3.05 -68.57 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699486256.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.932 kcal (2) G-P(sol) polarization free energy of solvation -71.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds