Wall clock time and date at job start Tue Mar 31 2020 15:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46684 * 2 1 4 4 C 1.52998 * 109.47203 * 119.99317 * 2 1 3 5 5 C 1.53005 * 109.47057 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47218 * 300.00467 * 5 4 2 7 7 H 1.08991 * 109.47175 * 299.99651 * 6 5 4 8 8 C 1.50702 * 109.46923 * 179.97438 * 6 5 4 9 9 O 1.21282 * 119.99546 * 240.00091 * 8 6 5 10 10 N 1.34778 * 120.00276 * 59.99966 * 8 6 5 11 11 C 1.46499 * 119.99981 * 180.02562 * 10 8 6 12 12 H 1.08992 * 109.47360 * 34.99824 * 11 10 8 13 13 C 1.53002 * 109.46721 * 274.99883 * 11 10 8 14 14 C 1.53003 * 109.46869 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47315 * 60.00097 * 14 13 11 16 16 C 1.53002 * 109.47037 * 300.00173 * 15 14 13 17 17 C 1.52995 * 109.47320 * 59.99598 * 16 15 14 18 18 H 1.09000 * 109.47181 * 60.00355 * 17 16 15 19 19 C 1.53002 * 109.47320 * 180.02562 * 17 16 15 20 20 N 1.46499 * 109.47337 * 295.00498 * 19 17 16 21 21 C 1.36935 * 119.99938 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00083 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99632 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99535 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00484 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47326 * 270.00576 * 25 23 21 27 27 H 1.48506 * 109.46545 * 30.00326 * 25 23 21 28 28 H 1.48498 * 109.47210 * 150.00037 * 25 23 21 29 29 C 1.52997 * 109.47126 * 59.99873 * 6 5 4 30 30 C 1.52995 * 109.47418 * 299.99913 * 29 6 5 31 31 H 1.09004 * 109.46684 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47397 * 300.00157 * 1 2 3 33 33 H 1.09000 * 109.47430 * 60.00788 * 1 2 3 34 34 H 1.09001 * 109.47373 * 300.00540 * 4 2 1 35 35 H 1.09004 * 109.46743 * 60.00719 * 4 2 1 36 36 H 1.09000 * 109.47285 * 179.97438 * 5 4 2 37 37 H 1.09004 * 109.46864 * 60.00661 * 5 4 2 38 38 H 0.97002 * 119.99728 * 359.97438 * 10 8 6 39 39 H 1.08995 * 109.47406 * 60.00023 * 13 11 10 40 40 H 1.09006 * 109.47006 * 299.99945 * 13 11 10 41 41 H 1.08992 * 109.47033 * 299.99831 * 14 13 11 42 42 H 1.09008 * 109.46627 * 179.97438 * 14 13 11 43 43 H 1.08998 * 109.47243 * 179.97438 * 15 14 13 44 44 H 1.09000 * 109.47096 * 59.99593 * 15 14 13 45 45 H 1.09006 * 109.46701 * 300.00105 * 16 15 14 46 46 H 1.08995 * 109.47370 * 180.02562 * 16 15 14 47 47 H 1.08993 * 109.47262 * 174.99815 * 19 17 16 48 48 H 1.09005 * 109.46767 * 55.00430 * 19 17 16 49 49 H 0.96999 * 119.99984 * 0.02562 * 20 19 17 50 50 H 0.97005 * 119.99717 * 179.97438 * 24 23 21 51 51 H 1.08998 * 109.47182 * 60.00201 * 29 6 5 52 52 H 1.09001 * 109.47011 * 179.97438 * 29 6 5 53 53 H 1.08998 * 109.47693 * 179.97438 * 30 29 6 54 54 H 1.08998 * 109.47179 * 300.00289 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5700 -0.7205 1.2496 6 6 4.0806 -1.4414 0.0004 7 1 3.7177 -2.4691 0.0002 8 6 5.5876 -1.4402 0.0004 9 8 6.1935 -0.9146 -0.9092 10 7 6.2619 -2.0233 1.0113 11 6 7.7269 -2.0216 1.0115 12 1 8.0893 -1.0898 0.5775 13 6 8.2383 -3.2026 0.1840 14 6 9.7684 -3.2013 0.1848 15 6 10.2778 -3.3270 1.6220 16 6 9.7663 -2.1461 2.4495 17 6 8.2364 -2.1474 2.4487 18 1 7.8736 -3.0792 2.8826 19 6 7.7249 -0.9661 3.2757 20 7 8.1119 -1.1470 4.6770 21 6 7.7620 -0.2083 5.6106 22 1 7.2011 0.6655 5.3139 23 6 8.1293 -0.3795 6.9383 24 7 7.7924 0.5225 7.8358 25 14 9.1001 -1.8906 7.4516 26 1 8.1614 -2.9772 7.8298 27 1 9.9490 -2.3415 6.3195 28 1 9.9619 -1.5543 8.6132 29 6 3.5705 -0.7202 -1.2488 30 6 2.0406 -0.7208 -1.2492 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 1.6766 -0.2072 2.1393 35 1 1.6767 -1.7488 1.2493 36 1 3.9334 -1.2338 2.1398 37 1 3.9330 0.3073 1.2498 38 1 5.7772 -2.4433 1.7390 39 1 7.8751 -3.1133 -0.8397 40 1 7.8759 -4.1345 0.6182 41 1 10.1311 -2.2695 -0.2490 42 1 10.1326 -4.0429 -0.4044 43 1 11.3678 -3.3265 1.6225 44 1 9.9150 -4.2588 2.0558 45 1 10.1291 -1.2142 2.0156 46 1 10.1296 -2.2354 3.4733 47 1 6.6387 -0.9145 3.2025 48 1 8.1589 -0.0413 2.8954 49 1 8.6167 -1.9313 4.9434 50 1 8.0487 0.4027 8.7637 51 1 3.9335 0.3075 -1.2487 52 1 3.9346 -1.2336 -2.1388 53 1 1.6772 -0.2067 -2.1389 54 1 1.6776 -1.7486 -1.2494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699486257.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:22 Heat of formation + Delta-G solvation = -96.804446 kcal Electronic energy + Delta-G solvation = -28796.748435 eV Core-core repulsion = 25151.415186 eV Total energy + Delta-G solvation = -3645.333249 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.51308 -39.96772 -38.64375 -36.58223 -35.23998 -33.85718 -33.66852 -31.70893 -31.61568 -30.47495 -27.78951 -26.96698 -24.48305 -23.92946 -23.55194 -22.50169 -22.11300 -21.30592 -20.81803 -20.46114 -19.72994 -18.07839 -17.35562 -16.66522 -16.39965 -16.20110 -15.67425 -15.50582 -15.25680 -15.15699 -15.08597 -14.89295 -14.72753 -14.62569 -14.29504 -14.14458 -13.70463 -13.68935 -13.43286 -13.14465 -13.08808 -13.00350 -12.76765 -12.67457 -12.36777 -12.20901 -12.17068 -12.01293 -11.92693 -11.89106 -11.84952 -11.59832 -11.49190 -11.36744 -11.25053 -11.15660 -10.98642 -10.91277 -10.55755 -9.96999 -9.30245 -8.03204 -5.37166 1.37311 1.41608 1.49044 1.66662 2.23263 2.48163 3.27969 3.40791 3.62672 3.70379 3.72929 3.78252 3.85462 3.96843 4.14908 4.16874 4.20309 4.26990 4.29229 4.42208 4.44040 4.45312 4.50009 4.53082 4.55041 4.58181 4.63813 4.82653 4.83812 4.86181 4.94090 5.00296 5.02354 5.04732 5.08137 5.14937 5.15578 5.20433 5.22153 5.26718 5.27142 5.29203 5.33120 5.38670 5.42690 5.46173 5.49882 5.59944 5.62952 5.74202 6.20222 6.58655 7.07254 7.28715 7.82068 8.03535 9.18528 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.010140 B = 0.003751 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.598166 B = 7462.766299 C = 9833.228230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.056 0.944 4 C -0.108 4.108 5 C -0.111 4.111 6 C -0.096 4.096 7 H 0.121 0.879 8 C 0.514 3.486 9 O -0.583 6.583 10 N -0.715 5.715 11 C 0.160 3.840 12 H 0.061 0.939 13 C -0.117 4.117 14 C -0.112 4.112 15 C -0.114 4.114 16 C -0.111 4.111 17 C -0.089 4.089 18 H 0.089 0.911 19 C 0.163 3.837 20 N -0.752 5.752 21 C -0.236 4.236 22 H 0.050 0.950 23 C -0.063 4.063 24 N -0.985 5.985 25 Si 0.956 3.044 26 H -0.274 1.274 27 H -0.249 1.249 28 H -0.298 1.298 29 C -0.096 4.096 30 C -0.106 4.106 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.410 0.590 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.029 0.971 48 H 0.005 0.995 49 H 0.368 0.632 50 H 0.258 0.742 51 H 0.046 0.954 52 H 0.062 0.938 53 H 0.070 0.930 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.677 -11.787 -19.828 24.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.074 0.926 4 C -0.146 4.146 5 C -0.149 4.149 6 C -0.117 4.117 7 H 0.139 0.861 8 C 0.302 3.698 9 O -0.464 6.464 10 N -0.366 5.366 11 C 0.054 3.946 12 H 0.079 0.921 13 C -0.155 4.155 14 C -0.150 4.150 15 C -0.151 4.151 16 C -0.149 4.149 17 C -0.109 4.109 18 H 0.108 0.892 19 C 0.037 3.963 20 N -0.398 5.398 21 C -0.367 4.367 22 H 0.068 0.932 23 C -0.254 4.254 24 N -0.635 5.635 25 Si 0.783 3.217 26 H -0.200 1.200 27 H -0.173 1.173 28 H -0.224 1.224 29 C -0.134 4.134 30 C -0.143 4.143 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.247 0.753 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.047 0.953 48 H 0.023 0.977 49 H 0.202 0.798 50 H 0.067 0.933 51 H 0.065 0.935 52 H 0.081 0.919 53 H 0.088 0.912 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.346 -11.216 -20.409 24.739 hybrid contribution 0.515 -0.013 1.264 1.365 sum -7.832 -11.229 -19.145 23.537 Atomic orbital electron populations 1.21795 0.94154 1.02352 1.01816 1.21177 0.96262 0.99143 0.94920 0.92553 1.21569 0.93285 1.01832 0.97871 1.21517 0.97381 0.99979 0.95973 1.21358 0.89158 1.03314 0.97894 0.86143 1.21204 0.91162 0.76397 0.81019 1.90656 1.71462 1.46700 1.37534 1.46107 1.07057 1.58166 1.25259 1.20818 0.79591 0.99354 0.94798 0.92056 1.21814 0.96514 0.97802 0.99387 1.21480 0.94206 1.02424 0.96900 1.21548 1.00915 0.97785 0.94865 1.21517 0.93550 0.99444 1.00405 1.21507 0.96850 0.98799 0.93704 0.89230 1.20736 0.96999 0.95762 0.82809 1.42640 1.67491 1.25152 1.04497 1.18992 1.28041 1.00849 0.88837 0.93220 1.25532 1.02521 1.01647 0.95720 1.69902 1.53366 1.38023 1.02229 0.85393 0.78905 0.79484 0.77916 1.19969 1.17298 1.22445 1.21293 0.96271 0.99864 0.95957 1.21571 0.93389 1.01596 0.97750 0.91834 0.92827 0.92345 0.91791 0.90144 0.91071 0.93530 0.75337 0.92528 0.90314 0.92638 0.89943 0.90868 0.90854 0.92724 0.92538 0.95325 0.97712 0.79813 0.93317 0.93540 0.91892 0.91170 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.19 71.98 0.66 -1.16 16 2 C -0.10 -1.50 2.72 -10.80 -0.03 -1.53 16 3 H 0.06 1.03 8.14 -2.38 -0.02 1.02 16 4 C -0.11 -1.75 5.20 30.60 0.16 -1.59 16 5 C -0.11 -2.21 5.10 30.59 0.16 -2.06 16 6 C -0.10 -1.87 2.53 -11.54 -0.03 -1.90 16 7 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 8 C 0.51 13.39 7.12 87.66 0.62 14.01 16 9 O -0.58 -19.76 15.64 -3.03 -0.05 -19.81 16 10 N -0.72 -16.88 4.20 -442.54 -1.86 -18.74 16 11 C 0.16 4.09 1.90 44.99 0.09 4.17 16 12 H 0.06 1.93 7.58 -2.39 -0.02 1.91 16 13 C -0.12 -2.44 5.49 30.60 0.17 -2.27 16 14 C -0.11 -2.13 5.92 30.59 0.18 -1.94 16 15 C -0.11 -2.27 5.92 30.59 0.18 -2.09 16 16 C -0.11 -2.99 5.08 30.59 0.16 -2.83 16 17 C -0.09 -2.48 1.80 -10.80 -0.02 -2.50 16 18 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 19 C 0.16 6.18 5.56 86.38 0.48 6.66 16 20 N -0.75 -34.51 5.13 -343.45 -1.76 -36.27 16 21 C -0.24 -13.55 10.47 84.03 0.88 -12.67 16 22 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 23 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 24 N -0.98 -63.30 13.97 21.65 0.30 -63.00 16 25 Si 0.96 44.66 27.74 68.60 1.90 46.56 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 27 H -0.25 -10.32 6.52 99.48 0.65 -9.68 16 28 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 29 C -0.10 -1.90 4.49 30.59 0.14 -1.76 16 30 C -0.11 -1.55 5.21 30.59 0.16 -1.39 16 31 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.07 1.42 7.57 -2.39 -0.02 1.40 16 37 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.41 8.19 7.81 -92.71 -0.72 7.46 16 39 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 46 H 0.06 1.71 7.18 -2.39 -0.02 1.69 16 47 H 0.03 1.09 7.30 -2.39 -0.02 1.07 16 48 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 49 H 0.37 15.82 4.71 -92.71 -0.44 15.38 16 50 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 51 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 52 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 53 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 54 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -71.74 406.04 2.58 -69.15 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: -0.37 Total: 36.18 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 4.42 Total: -14.07 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -3.32 Total: -118.01 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.05 Total: -19.81 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.90 Total: 46.56 kcal Total: -71.74 2.58 -69.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699486257.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.650 kcal (2) G-P(sol) polarization free energy of solvation -71.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds