Wall clock time and date at job start Tue Mar 31 2020 15:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 110.43167 * 2 1 4 4 C 1.54885 * 110.48397 * 122.53984 * 2 1 3 5 5 C 1.54894 * 102.74427 * 156.62182 * 4 2 1 6 6 C 1.54272 * 104.19720 * 322.05703 * 5 4 2 7 7 C 1.52994 * 110.03138 * 142.94497 * 6 5 4 8 8 C 1.50695 * 110.03027 * 264.32876 * 6 5 4 9 9 O 1.21287 * 119.99536 * 231.42240 * 8 6 5 10 10 N 1.34769 * 120.00479 * 51.42867 * 8 6 5 11 11 C 1.46501 * 120.00145 * 179.97438 * 10 8 6 12 12 H 1.09003 * 109.47331 * 324.99595 * 11 10 8 13 13 C 1.53000 * 109.47081 * 204.99676 * 11 10 8 14 14 N 1.46501 * 109.47304 * 54.99887 * 13 11 10 15 15 C 1.36939 * 120.00075 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99405 * 0.02562 * 15 14 13 17 17 C 1.38811 * 119.99726 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00218 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99517 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47459 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47119 * 120.00389 * 19 17 15 22 22 H 1.48500 * 109.47093 * 239.99987 * 19 17 15 23 23 C 1.52999 * 109.47408 * 84.99350 * 11 10 8 24 24 C 1.53006 * 117.49759 * 8.75203 * 23 11 10 25 25 C 1.52994 * 117.50074 * 300.09099 * 23 11 10 26 26 C 1.53882 * 106.59532 * 23.61100 * 6 5 4 27 27 C 1.52994 * 110.03177 * 240.71445 * 26 6 5 28 28 C 1.52998 * 110.02954 * 119.28342 * 26 6 5 29 29 H 1.09009 * 109.47044 * 298.91118 * 1 2 3 30 30 H 1.08999 * 109.47418 * 178.90922 * 1 2 3 31 31 H 1.09005 * 109.47370 * 58.90883 * 1 2 3 32 32 H 1.08998 * 110.75952 * 274.93168 * 4 2 1 33 33 H 1.09004 * 110.75625 * 38.12857 * 4 2 1 34 34 H 1.09001 * 110.48964 * 80.73991 * 5 4 2 35 35 H 1.09000 * 110.48710 * 203.38233 * 5 4 2 36 36 H 1.08999 * 109.47571 * 61.45385 * 7 6 5 37 37 H 1.09003 * 109.47072 * 181.45961 * 7 6 5 38 38 H 1.09004 * 109.46861 * 301.45571 * 7 6 5 39 39 H 0.97004 * 120.00083 * 359.97438 * 10 8 6 40 40 H 1.09008 * 109.47191 * 175.00117 * 13 11 10 41 41 H 1.09001 * 109.47296 * 294.99360 * 13 11 10 42 42 H 0.96995 * 119.99813 * 359.97438 * 14 13 11 43 43 H 0.96994 * 120.00024 * 179.97438 * 18 17 15 44 44 H 1.09001 * 115.54978 * 154.41436 * 23 11 10 45 45 H 1.09000 * 117.49538 * 359.97438 * 24 23 11 46 46 H 1.08998 * 117.49883 * 145.01630 * 24 23 11 47 47 H 1.09003 * 117.49994 * 214.97685 * 25 23 11 48 48 H 1.09002 * 117.49795 * 359.97148 * 25 23 11 49 49 H 1.08994 * 109.47109 * 184.58868 * 27 26 6 50 50 H 1.09001 * 109.47050 * 304.58538 * 27 26 6 51 51 H 1.08997 * 109.47402 * 64.58512 * 27 26 6 52 52 H 1.09004 * 109.47198 * 301.37971 * 28 26 6 53 53 H 1.08994 * 109.47065 * 61.37748 * 28 26 6 54 54 H 1.09002 * 109.47083 * 181.38016 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0720 -0.7804 1.2231 5 6 3.4907 -1.1969 0.7614 6 6 3.3165 -1.5414 -0.7322 7 6 4.5470 -1.0895 -1.5212 8 6 3.1128 -3.0251 -0.8994 9 8 3.7960 -3.6461 -1.6860 10 7 2.1715 -3.6620 -0.1751 11 6 1.9731 -5.1043 -0.3382 12 1 2.1411 -5.3788 -1.3796 13 6 0.5424 -5.4707 0.0615 14 7 -0.4030 -4.6601 -0.7102 15 6 -1.7505 -4.8149 -0.5218 16 1 -2.1162 -5.5343 0.1959 17 6 -2.6462 -4.0465 -1.2527 18 7 -2.2003 -3.1695 -2.1270 19 14 -4.4843 -4.2571 -0.9951 20 1 -4.7236 -5.2986 0.0361 21 1 -5.0716 -2.9700 -0.5437 22 1 -5.1190 -4.6697 -2.2727 23 6 2.9610 -5.8591 0.5537 24 6 3.7782 -5.0392 1.5542 25 6 4.4532 -5.6246 0.3113 26 6 2.0698 -0.7803 -1.2163 27 6 1.0139 -1.7682 -1.7160 28 6 2.4506 0.1912 -2.3353 29 1 -0.3633 0.4969 0.8997 30 1 -0.3634 -1.0274 -0.0196 31 1 -0.3634 0.5307 -0.8801 32 1 2.1252 -0.1355 2.1003 33 1 1.4561 -1.6565 1.4262 34 1 4.1898 -0.3696 0.8832 35 1 3.8316 -2.0705 1.3171 36 1 5.4277 -1.6166 -1.1543 37 1 4.4034 -1.3136 -2.5782 38 1 4.6866 -0.0160 -1.3931 39 1 1.6253 -3.1654 0.4541 40 1 0.3671 -6.5269 -0.1434 41 1 0.4018 -5.2788 1.1252 42 1 -0.0744 -4.0138 -1.3545 43 1 -2.8262 -2.6328 -2.6379 44 1 2.6513 -6.8593 0.8567 45 1 3.6124 -3.9621 1.5767 46 1 4.0066 -5.5002 2.5151 47 1 5.1255 -6.4704 0.4550 48 1 4.7313 -4.9329 -0.4840 49 1 0.1695 -1.2182 -2.1313 50 1 1.4477 -2.4045 -2.4873 51 1 0.6721 -2.3857 -0.8853 52 1 3.2023 0.8905 -1.9692 53 1 2.8547 -0.3674 -3.1795 54 1 1.5662 0.7427 -2.6543 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699593565.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:47 Heat of formation + Delta-G solvation = -19.335933 kcal Electronic energy + Delta-G solvation = -31408.859354 eV Core-core repulsion = 27766.885391 eV Total energy + Delta-G solvation = -3641.973963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.44472 -39.86237 -38.15343 -36.55642 -34.75760 -33.75987 -33.28927 -32.89129 -30.09691 -28.79440 -28.16513 -25.89011 -25.21640 -24.54851 -23.47645 -23.07469 -22.76543 -20.91692 -20.83587 -19.42676 -18.84917 -17.65780 -17.36996 -17.02633 -16.61724 -16.31178 -15.73341 -15.64221 -15.23812 -15.01129 -14.78078 -14.60743 -14.40625 -14.24109 -14.06143 -13.78881 -13.58085 -13.33321 -13.24678 -13.08698 -12.81847 -12.65260 -12.62359 -12.56516 -12.50577 -12.23491 -12.11464 -12.05448 -11.88890 -11.75498 -11.69252 -11.55398 -11.26708 -11.24271 -11.19941 -11.04881 -10.95439 -10.81321 -10.41546 -9.78766 -8.95105 -7.86933 -5.16587 1.47794 1.49577 1.57890 1.73432 2.29621 2.57578 2.96448 3.45250 3.51449 3.54859 3.56549 3.69465 3.96358 4.07740 4.11900 4.20154 4.23694 4.29388 4.37458 4.40298 4.42748 4.51188 4.52433 4.56274 4.65550 4.70846 4.76915 4.80540 4.84093 4.88087 4.93988 4.95888 4.99987 5.02516 5.06798 5.13279 5.15178 5.17997 5.24506 5.29643 5.32252 5.36541 5.39310 5.41658 5.46141 5.55068 5.55584 5.61026 5.66684 5.73117 6.31925 6.66872 7.37207 7.41004 8.12625 8.40839 9.33369 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011053 B = 0.006031 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.635609 B = 4641.947559 C = 6186.898190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 H 0.100 0.900 4 C -0.122 4.122 5 C -0.107 4.107 6 C -0.076 4.076 7 C -0.120 4.120 8 C 0.530 3.470 9 O -0.579 6.579 10 N -0.704 5.704 11 C 0.173 3.827 12 H 0.054 0.946 13 C 0.146 3.854 14 N -0.745 5.745 15 C -0.248 4.248 16 H 0.072 0.928 17 C -0.061 4.061 18 N -0.946 5.946 19 Si 0.963 3.037 20 H -0.271 1.271 21 H -0.294 1.294 22 H -0.300 1.300 23 C -0.170 4.170 24 C -0.161 4.161 25 C -0.188 4.188 26 C -0.050 4.050 27 C -0.127 4.127 28 C -0.136 4.136 29 H 0.062 0.938 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.092 0.908 39 H 0.405 0.595 40 H 0.034 0.966 41 H 0.037 0.963 42 H 0.383 0.617 43 H 0.247 0.753 44 H 0.122 0.878 45 H 0.092 0.908 46 H 0.110 0.890 47 H 0.101 0.899 48 H 0.093 0.907 49 H 0.042 0.958 50 H 0.009 0.991 51 H 0.074 0.926 52 H 0.086 0.914 53 H 0.044 0.956 54 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.183 7.245 9.092 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.093 4.093 3 H 0.118 0.882 4 C -0.159 4.159 5 C -0.145 4.145 6 C -0.079 4.079 7 C -0.177 4.177 8 C 0.319 3.681 9 O -0.459 6.459 10 N -0.357 5.357 11 C 0.068 3.932 12 H 0.073 0.927 13 C 0.019 3.981 14 N -0.391 5.391 15 C -0.380 4.380 16 H 0.090 0.910 17 C -0.255 4.255 18 N -0.596 5.596 19 Si 0.794 3.206 20 H -0.195 1.195 21 H -0.221 1.221 22 H -0.228 1.228 23 C -0.190 4.190 24 C -0.198 4.198 25 C -0.225 4.225 26 C -0.051 4.051 27 C -0.184 4.184 28 C -0.193 4.193 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.123 0.877 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.111 0.889 39 H 0.244 0.756 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.219 0.781 43 H 0.056 0.944 44 H 0.139 0.861 45 H 0.110 0.890 46 H 0.129 0.871 47 H 0.119 0.881 48 H 0.111 0.889 49 H 0.061 0.939 50 H 0.028 0.972 51 H 0.093 0.907 52 H 0.105 0.895 53 H 0.063 0.937 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.495 6.708 8.616 18.147 hybrid contribution -1.769 -0.266 -0.674 1.911 sum 12.726 6.442 7.942 16.325 Atomic orbital electron populations 1.21839 0.95844 1.01420 1.01102 1.22014 0.94604 0.99685 0.93034 0.88182 1.22657 0.95105 0.99844 0.98306 1.22549 0.98304 1.02616 0.90997 1.21599 0.97622 0.89460 0.99206 1.21764 0.94784 1.02063 0.99138 1.20869 0.78323 0.90197 0.78693 1.90572 1.48391 1.69076 1.37886 1.46290 1.37400 1.08556 1.43423 1.20480 0.93809 0.80601 0.98348 0.92747 1.21033 0.86987 0.94797 0.95254 1.42719 1.02129 1.46329 1.47930 1.19539 0.83802 1.16874 1.17754 0.90965 1.25379 1.01218 0.99418 0.99447 1.69820 1.33660 1.27439 1.28673 0.85235 0.81615 0.77022 0.76761 1.19536 1.22084 1.22786 1.22610 0.92513 1.00909 1.02929 1.23038 1.02775 0.99851 0.94136 1.23264 0.94362 1.04056 1.00816 1.21220 0.92437 0.94838 0.96565 1.22117 0.97608 0.98339 1.00386 1.21995 1.01606 0.98497 0.97223 0.91889 0.94218 0.93779 0.88452 0.93116 0.87669 0.91209 0.92781 0.93651 0.88932 0.75597 0.94861 0.94476 0.78117 0.94368 0.86057 0.88968 0.87126 0.88081 0.88859 0.93906 0.97198 0.90703 0.89524 0.93704 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 8.08 71.98 0.58 -3.61 16 2 C -0.08 -1.73 2.90 -9.72 -0.03 -1.76 16 3 H 0.10 1.82 7.86 -2.38 -0.02 1.80 16 4 C -0.12 -2.46 5.96 31.89 0.19 -2.27 16 5 C -0.11 -2.06 5.64 31.67 0.18 -1.88 16 6 C -0.08 -1.95 0.84 -52.20 -0.04 -1.99 16 7 C -0.12 -2.79 6.53 71.98 0.47 -2.32 16 8 C 0.53 17.52 3.43 87.66 0.30 17.82 16 9 O -0.58 -22.82 13.06 -3.05 -0.04 -22.86 16 10 N -0.70 -23.05 1.40 -442.54 -0.62 -23.67 16 11 C 0.17 6.11 2.59 44.99 0.12 6.23 16 12 H 0.05 2.29 7.58 -2.39 -0.02 2.27 16 13 C 0.15 5.79 5.80 86.38 0.50 6.29 16 14 N -0.75 -36.75 5.30 -343.44 -1.82 -38.57 16 15 C -0.25 -13.41 9.99 84.03 0.84 -12.57 16 16 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 17 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 18 N -0.95 -55.01 13.06 21.65 0.28 -54.73 16 19 Si 0.96 45.36 29.55 68.60 2.03 47.39 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 23 C -0.17 -4.82 5.71 -10.79 -0.06 -4.88 16 24 C -0.16 -3.85 9.74 30.62 0.30 -3.55 16 25 C -0.19 -5.14 9.82 30.62 0.30 -4.84 16 26 C -0.05 -1.37 0.86 -51.46 -0.04 -1.42 16 27 C -0.13 -4.85 5.12 71.98 0.37 -4.48 16 28 C -0.14 -3.31 7.20 71.98 0.52 -2.80 16 29 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.04 1.46 6.24 -2.39 -0.01 1.45 16 31 H 0.04 1.33 7.92 -2.38 -0.02 1.31 16 32 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 1.23 6.13 -2.38 -0.01 1.21 16 34 H 0.10 1.48 7.85 -2.39 -0.02 1.46 16 35 H 0.07 1.36 6.03 -2.39 -0.01 1.34 16 36 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.04 1.24 6.77 -2.39 -0.02 1.22 16 38 H 0.09 1.56 6.62 -2.38 -0.02 1.54 16 39 H 0.41 13.07 4.84 -92.71 -0.45 12.62 16 40 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.38 19.86 4.93 -92.71 -0.46 19.41 16 43 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 44 H 0.12 3.09 8.11 -2.39 -0.02 3.07 16 45 H 0.09 2.23 4.87 -2.39 -0.01 2.22 16 46 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 48 H 0.09 3.09 5.01 -2.39 -0.01 3.08 16 49 H 0.04 1.81 7.22 -2.39 -0.02 1.79 16 50 H 0.01 0.40 7.25 -2.39 -0.02 0.38 16 51 H 0.07 3.02 2.90 -2.39 -0.01 3.02 16 52 H 0.09 1.56 6.62 -2.38 -0.02 1.54 16 53 H 0.04 1.20 6.86 -2.39 -0.02 1.18 16 54 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -64.60 382.29 4.78 -59.82 By element: Atomic # 1 Polarization: 53.54 SS G_CDS: 0.00 Total: 53.54 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: 4.95 Total: -20.92 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -2.16 Total: -116.97 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.04 Total: -22.86 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -64.60 4.78 -59.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699593565.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.487 kcal (2) G-P(sol) polarization free energy of solvation -64.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds