Wall clock time and date at job start Tue Mar 31 2020 15:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.53816 * 2 1 4 4 C 1.54264 * 110.48030 * 237.38898 * 2 1 3 5 5 C 1.53879 * 106.63588 * 217.73160 * 4 2 1 6 6 C 1.54261 * 106.59875 * 359.97438 * 5 4 2 7 7 H 1.08997 * 110.48643 * 264.92652 * 6 5 4 8 8 C 1.53000 * 110.48392 * 142.42084 * 6 5 4 9 9 C 1.50695 * 109.47585 * 66.45062 * 8 6 5 10 10 O 1.21288 * 119.99594 * 0.02562 * 9 8 6 11 11 N 1.34781 * 120.00311 * 179.97438 * 9 8 6 12 12 C 1.46501 * 119.99726 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46567 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.45973 * 60.03066 * 13 12 11 15 15 C 1.53034 * 109.46306 * 300.06733 * 13 12 11 16 16 C 1.53194 * 109.31521 * 178.61454 * 15 13 12 17 17 N 1.46930 * 108.77393 * 54.63358 * 16 15 13 18 18 C 1.36930 * 120.62912 * 126.41448 * 17 16 15 19 19 H 1.08004 * 120.00042 * 332.61118 * 18 17 16 20 20 C 1.38815 * 120.00317 * 152.60798 * 18 17 16 21 21 N 1.31616 * 120.00497 * 159.36324 * 20 18 17 22 22 Si 1.86798 * 119.99507 * 339.36445 * 20 18 17 23 23 H 1.48497 * 109.47317 * 92.90816 * 22 20 18 24 24 H 1.48510 * 109.46790 * 212.90545 * 22 20 18 25 25 H 1.48500 * 109.47347 * 332.90513 * 22 20 18 26 26 C 1.46928 * 118.74210 * 306.39824 * 17 16 15 27 27 C 1.53040 * 109.45772 * 180.02562 * 13 12 11 28 28 C 1.54890 * 104.19603 * 23.60935 * 6 5 4 29 29 H 1.09001 * 109.47084 * 181.16241 * 1 2 3 30 30 H 1.09005 * 109.47093 * 301.15279 * 1 2 3 31 31 H 1.08996 * 109.47392 * 61.15518 * 1 2 3 32 32 H 1.08998 * 110.03034 * 98.42767 * 4 2 1 33 33 H 1.08998 * 110.03644 * 337.04484 * 4 2 1 34 34 H 1.09001 * 110.02578 * 119.26758 * 5 4 2 35 35 H 1.09007 * 110.03296 * 240.64249 * 5 4 2 36 36 H 1.09000 * 109.47294 * 186.45600 * 8 6 5 37 37 H 1.09007 * 109.47280 * 306.44901 * 8 6 5 38 38 H 0.96999 * 119.99903 * 0.02562 * 11 9 8 39 39 H 1.08993 * 109.47561 * 299.99968 * 12 11 9 40 40 H 1.09005 * 109.47350 * 60.00294 * 12 11 9 41 41 H 1.09000 * 109.47306 * 59.99404 * 14 13 12 42 42 H 1.08996 * 109.47025 * 179.97438 * 14 13 12 43 43 H 1.09004 * 109.46926 * 299.99900 * 14 13 12 44 44 H 1.08994 * 109.50009 * 298.56697 * 15 13 12 45 45 H 1.09004 * 109.49801 * 58.66467 * 15 13 12 46 46 H 1.09008 * 109.58349 * 294.85236 * 16 15 13 47 47 H 1.08995 * 109.58877 * 174.42594 * 16 15 13 48 48 H 0.97000 * 120.00080 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.58336 * 293.82165 * 26 17 16 50 50 H 1.08991 * 109.58813 * 173.39210 * 26 17 16 51 51 H 1.09011 * 109.49767 * 301.33954 * 27 13 12 52 52 H 1.08999 * 109.49946 * 61.43429 * 27 13 12 53 53 H 1.09004 * 110.75577 * 80.37299 * 28 6 5 54 54 H 1.09001 * 110.75431 * 203.74355 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0698 -0.7788 -1.2173 5 6 3.3163 -1.5414 -0.7350 6 6 3.4916 -1.1992 0.7589 7 1 4.1913 -0.3725 0.8813 8 6 3.9730 -2.4259 1.5363 9 6 5.3651 -2.7899 1.0888 10 8 5.9181 -2.1324 0.2326 11 7 5.9961 -3.8453 1.6406 12 6 7.3498 -4.1987 1.2058 13 6 7.8315 -5.4248 1.9841 14 6 6.8881 -6.5998 1.7190 15 6 7.8415 -5.1069 3.4811 16 6 8.2911 -6.3474 4.2594 17 7 9.5861 -6.7949 3.7289 18 6 10.6561 -6.9786 4.5634 19 1 10.7286 -6.4133 5.4808 20 6 11.6475 -7.8913 4.2304 21 7 12.8409 -7.7955 4.7770 22 14 11.2877 -9.2558 3.0064 23 1 11.6716 -8.8112 1.6425 24 1 12.0680 -10.4658 3.3705 25 1 9.8377 -9.5752 3.0331 26 6 9.7112 -7.0420 2.2859 27 6 9.2458 -5.7934 1.5303 28 6 2.0736 -0.7824 1.2221 29 1 -0.3633 -1.0275 0.0208 30 1 -0.3633 0.5317 0.8795 31 1 -0.3634 0.4958 -0.9001 32 1 2.3410 -0.0857 -2.0136 33 1 1.3171 -1.4816 -1.5747 34 1 3.1681 -2.6143 -0.8576 35 1 4.1923 -1.2190 -1.2979 36 1 3.9815 -2.2001 2.6026 37 1 3.3003 -3.2627 1.3476 38 1 5.5540 -4.3708 2.3256 39 1 7.3416 -4.4248 0.1397 40 1 8.0222 -3.3618 1.3946 41 1 6.8802 -6.8261 0.6528 42 1 7.2313 -7.4734 2.2730 43 1 5.8807 -6.3369 2.0421 44 1 8.5322 -4.2862 3.6741 45 1 6.8387 -4.8216 3.7991 46 1 7.5533 -7.1410 4.1400 47 1 8.3951 -6.0984 5.3154 48 1 13.5338 -8.4331 4.5440 49 1 9.0892 -7.8922 2.0056 50 1 10.7521 -7.2512 2.0399 51 1 9.2428 -5.9967 0.4593 52 1 9.9231 -4.9660 1.7420 53 1 1.4591 -1.6601 1.4225 54 1 2.1276 -0.1387 2.1001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699863396.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:31 Heat of formation + Delta-G solvation = -67.252957 kcal Electronic energy + Delta-G solvation = -28239.747525 eV Core-core repulsion = 24595.695724 eV Total energy + Delta-G solvation = -3644.051801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.22862 -40.22124 -38.96924 -36.69229 -34.61297 -33.58151 -33.05580 -31.93261 -30.55947 -29.07505 -28.43176 -27.41201 -25.64055 -24.89825 -24.19135 -22.65628 -21.59984 -20.94448 -20.36795 -19.69788 -18.46393 -17.90562 -17.29669 -17.15762 -16.62619 -16.36294 -15.95630 -15.53917 -15.41227 -15.25066 -15.15313 -14.83337 -14.57503 -14.29991 -14.23967 -13.97101 -13.91347 -13.75645 -13.59372 -13.24146 -12.91409 -12.83115 -12.69634 -12.42070 -12.25538 -12.18674 -12.11356 -11.93388 -11.72410 -11.68943 -11.55974 -11.53591 -11.46769 -11.41454 -11.25695 -11.19639 -11.10651 -10.73641 -10.60247 -9.99285 -8.88017 -8.15858 -5.46327 1.30169 1.40498 1.49852 1.76180 2.30396 2.42237 3.06519 3.38606 3.64464 3.69188 3.74827 3.79428 3.82391 3.86575 4.08409 4.28377 4.30963 4.37629 4.39928 4.49448 4.50965 4.57110 4.63090 4.72375 4.73071 4.74540 4.76224 4.78525 4.80829 4.84739 4.88597 4.92050 4.94584 5.04502 5.05257 5.06099 5.17875 5.19402 5.20332 5.25369 5.27128 5.30564 5.37878 5.39374 5.45053 5.53437 5.57074 5.62759 5.63530 5.88509 6.13780 6.65865 6.94530 7.36860 7.65382 8.05673 9.04229 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.037579 B = 0.002183 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.920725 B =12822.819285 C =12993.242358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.066 0.934 4 C -0.121 4.121 5 C -0.113 4.113 6 C -0.076 4.076 7 H 0.058 0.942 8 C -0.128 4.128 9 C 0.505 3.495 10 O -0.585 6.585 11 N -0.716 5.716 12 C 0.142 3.858 13 C -0.054 4.054 14 C -0.141 4.141 15 C -0.113 4.113 16 C 0.142 3.858 17 N -0.619 5.619 18 C -0.245 4.245 19 H 0.049 0.951 20 C -0.040 4.040 21 N -0.960 5.960 22 Si 0.948 3.052 23 H -0.278 1.278 24 H -0.313 1.313 25 H -0.256 1.256 26 C 0.123 3.877 27 C -0.118 4.118 28 C -0.108 4.108 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.041 0.959 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.413 0.587 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.077 0.923 44 H 0.043 0.957 45 H 0.091 0.909 46 H 0.045 0.955 47 H 0.050 0.950 48 H 0.260 0.740 49 H 0.041 0.959 50 H 0.042 0.958 51 H 0.077 0.923 52 H 0.048 0.952 53 H 0.083 0.917 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.278 11.381 -9.471 31.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.085 0.915 4 C -0.158 4.158 5 C -0.151 4.151 6 C -0.095 4.095 7 H 0.076 0.924 8 C -0.167 4.167 9 C 0.293 3.707 10 O -0.465 6.465 11 N -0.369 5.369 12 C 0.018 3.982 13 C -0.055 4.055 14 C -0.198 4.198 15 C -0.151 4.151 16 C 0.018 3.982 17 N -0.344 5.344 18 C -0.375 4.375 19 H 0.067 0.933 20 C -0.234 4.234 21 N -0.606 5.606 22 Si 0.777 3.223 23 H -0.205 1.205 24 H -0.243 1.243 25 H -0.180 1.180 26 C -0.002 4.002 27 C -0.158 4.158 28 C -0.146 4.146 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.251 0.749 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.062 0.938 45 H 0.109 0.891 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.060 0.940 51 H 0.095 0.905 52 H 0.067 0.933 53 H 0.102 0.898 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -27.764 11.775 -10.048 31.787 hybrid contribution 1.086 -0.913 -0.086 1.421 sum -26.678 10.862 -10.134 30.535 Atomic orbital electron populations 1.21778 0.94004 1.02169 1.01870 1.21976 0.96167 0.98906 0.94745 0.91520 1.22239 0.96935 0.98848 0.97798 1.22102 0.97245 0.99797 0.95951 1.21692 0.97098 0.96300 0.94431 0.92357 1.21808 0.91634 1.00313 1.02942 1.21383 0.89118 0.79313 0.80892 1.90688 1.69096 1.52913 1.33850 1.46025 1.16687 1.31519 1.42709 1.21165 0.83186 0.95853 0.98025 1.20557 0.94904 0.94873 0.95157 1.21929 0.98910 0.97035 1.01892 1.21945 1.01366 0.97764 0.94070 1.21167 0.85690 0.94890 0.96483 1.44462 1.08402 1.79368 1.02153 1.18865 0.98533 1.16383 1.03705 0.93322 1.25934 0.95616 1.00804 1.01050 1.69978 1.03046 1.38502 1.49092 0.85882 0.78391 0.79266 0.78724 1.20486 1.24253 1.18026 1.21379 0.98528 0.96429 0.83816 1.21926 0.96087 0.98154 0.99610 1.22631 0.94095 1.00394 0.97459 0.92155 0.92142 0.92755 0.92724 0.91155 0.92313 0.93989 0.86604 0.86472 0.74883 0.92103 0.93525 0.92142 0.92902 0.90373 0.93813 0.89090 0.93664 0.93142 0.93104 0.94149 0.93993 0.90456 0.93293 0.89837 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.11 71.98 0.66 -0.61 16 2 C -0.10 -1.17 3.46 -9.70 -0.03 -1.20 16 3 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -1.69 6.37 31.32 0.20 -1.49 16 5 C -0.11 -2.00 5.39 31.32 0.17 -1.84 16 6 C -0.08 -1.17 2.47 -9.72 -0.02 -1.19 16 7 H 0.06 1.16 8.02 -2.39 -0.02 1.15 16 8 C -0.13 -1.61 5.10 29.85 0.15 -1.45 16 9 C 0.50 10.57 7.61 87.65 0.67 11.24 16 10 O -0.59 -17.73 14.79 -3.06 -0.05 -17.77 16 11 N -0.72 -13.25 4.95 -463.05 -2.29 -15.54 16 12 C 0.14 3.41 4.56 86.38 0.39 3.80 16 13 C -0.05 -1.39 0.53 -52.15 -0.03 -1.41 16 14 C -0.14 -3.03 7.54 71.98 0.54 -2.48 16 15 C -0.11 -3.08 4.75 30.67 0.15 -2.93 16 16 C 0.14 5.01 6.05 86.36 0.52 5.53 16 17 N -0.62 -28.15 2.77 -699.09 -1.94 -30.09 16 18 C -0.25 -13.86 10.03 84.04 0.84 -13.02 16 19 H 0.05 3.03 8.06 -2.91 -0.02 3.00 16 20 C -0.04 -2.33 5.23 84.86 0.44 -1.89 16 21 N -0.96 -60.99 13.97 21.65 0.30 -60.69 16 22 Si 0.95 46.60 24.34 68.60 1.67 48.27 16 23 H -0.28 -13.02 6.62 99.48 0.66 -12.36 16 24 H -0.31 -15.75 7.11 99.48 0.71 -15.04 16 25 H -0.26 -11.78 6.64 99.48 0.66 -11.12 16 26 C 0.12 5.04 3.73 86.36 0.32 5.36 16 27 C -0.12 -3.85 4.90 30.67 0.15 -3.70 16 28 C -0.11 -1.15 5.76 31.91 0.18 -0.96 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.47 8.14 -2.38 -0.02 0.46 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.86 7.84 -2.39 -0.02 0.85 16 34 H 0.06 1.00 7.77 -2.39 -0.02 0.98 16 35 H 0.04 0.98 7.60 -2.38 -0.02 0.97 16 36 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.12 0.94 8.05 -2.38 -0.02 0.92 16 38 H 0.41 5.31 6.16 -92.71 -0.57 4.74 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.05 1.36 4.98 -2.39 -0.01 1.35 16 43 H 0.08 1.21 6.86 -2.38 -0.02 1.20 16 44 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.09 1.79 6.82 -2.39 -0.02 1.77 16 46 H 0.05 1.44 6.69 -2.38 -0.02 1.43 16 47 H 0.05 1.86 7.93 -2.39 -0.02 1.84 16 48 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 49 H 0.04 1.57 5.62 -2.39 -0.01 1.55 16 50 H 0.04 1.96 4.50 -2.39 -0.01 1.95 16 51 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 52 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 53 H 0.08 0.68 7.98 -2.39 -0.02 0.66 16 54 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -72.55 392.82 3.20 -69.35 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.19 Total: 14.74 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 5.31 Total: -8.27 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -3.92 Total: -106.32 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.05 Total: -17.77 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.67 Total: 48.27 kcal Total: -72.55 3.20 -69.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699863396.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.095 kcal (2) G-P(sol) polarization free energy of solvation -72.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds