Wall clock time and date at job start Tue Mar 31 2020 15:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.53984 * 2 1 4 4 C 1.54895 * 110.48756 * 122.60984 * 2 1 3 5 5 C 1.54882 * 102.74855 * 156.62373 * 4 2 1 6 6 C 1.54271 * 104.31209 * 321.98920 * 5 4 2 7 7 H 1.08998 * 110.03213 * 264.39444 * 6 5 4 8 8 C 1.52997 * 110.03169 * 142.96395 * 6 5 4 9 9 C 1.50709 * 109.47172 * 66.45379 * 8 6 5 10 10 O 1.21274 * 119.99807 * 0.02562 * 9 8 6 11 11 N 1.34776 * 119.99986 * 179.97438 * 9 8 6 12 12 C 1.46498 * 119.99618 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46839 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46158 * 60.02397 * 13 12 11 15 15 C 1.53045 * 109.45643 * 300.06561 * 13 12 11 16 16 C 1.53196 * 109.30908 * 178.61420 * 15 13 12 17 17 N 1.46929 * 108.77483 * 54.63644 * 16 15 13 18 18 C 1.36941 * 120.62842 * 126.36659 * 17 16 15 19 19 H 1.07990 * 119.99625 * 207.69627 * 18 17 16 20 20 C 1.38810 * 120.00016 * 27.69567 * 18 17 16 21 21 N 1.31621 * 119.99927 * 17.35879 * 20 18 17 22 22 Si 1.86800 * 120.00165 * 197.36328 * 20 18 17 23 23 H 1.48498 * 109.47030 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47473 * 119.99864 * 22 20 18 25 25 H 1.48499 * 109.47033 * 240.00229 * 22 20 18 26 26 C 1.46923 * 118.74045 * 306.39116 * 17 16 15 27 27 C 1.53036 * 109.45915 * 180.02562 * 13 12 11 28 28 C 1.54218 * 106.42728 * 23.64679 * 6 5 4 29 29 H 1.09002 * 109.46977 * 298.84444 * 1 2 3 30 30 H 1.08998 * 109.47102 * 58.83859 * 1 2 3 31 31 H 1.08999 * 109.47324 * 178.84133 * 1 2 3 32 32 H 1.09001 * 110.75185 * 38.30065 * 4 2 1 33 33 H 1.09006 * 110.75441 * 274.93843 * 4 2 1 34 34 H 1.08994 * 110.48991 * 80.73856 * 5 4 2 35 35 H 1.09009 * 110.48648 * 203.24971 * 5 4 2 36 36 H 1.08993 * 109.47525 * 186.45348 * 8 6 5 37 37 H 1.09001 * 109.46948 * 306.45750 * 8 6 5 38 38 H 0.97002 * 119.99971 * 0.02562 * 11 9 8 39 39 H 1.08996 * 109.47035 * 299.99730 * 12 11 9 40 40 H 1.09001 * 109.47220 * 60.00426 * 12 11 9 41 41 H 1.09001 * 109.46567 * 60.00219 * 14 13 12 42 42 H 1.08994 * 109.46955 * 179.97438 * 14 13 12 43 43 H 1.09001 * 109.47312 * 300.00016 * 14 13 12 44 44 H 1.08993 * 109.50159 * 298.56575 * 15 13 12 45 45 H 1.09002 * 109.49928 * 58.67027 * 15 13 12 46 46 H 1.08998 * 109.58450 * 294.84737 * 16 15 13 47 47 H 1.09002 * 109.58174 * 174.42462 * 16 15 13 48 48 H 0.97001 * 119.99776 * 179.97438 * 21 20 18 49 49 H 1.09007 * 109.58560 * 293.82235 * 26 17 16 50 50 H 1.08990 * 109.70450 * 173.46413 * 26 17 16 51 51 H 1.09000 * 109.49682 * 301.33312 * 27 13 12 52 52 H 1.09001 * 109.50324 * 61.39985 * 27 13 12 53 53 H 1.08998 * 110.00079 * 240.68838 * 28 6 5 54 54 H 1.09001 * 110.06476 * 119.30040 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0721 -0.7820 1.2222 5 6 3.4907 -1.1978 0.7601 6 6 3.3193 -1.5428 -0.7337 7 1 3.1719 -2.6160 -0.8545 8 6 4.5508 -1.0905 -1.5208 9 6 5.7454 -1.9056 -1.0966 10 8 5.6235 -2.7640 -0.2487 11 7 6.9489 -1.6812 -1.6603 12 6 8.1099 -2.4739 -1.2483 13 6 9.3416 -2.0215 -2.0352 14 6 9.6098 -0.5414 -1.7555 15 6 9.0914 -2.2200 -3.5320 16 6 10.3128 -1.7339 -4.3186 17 7 11.5073 -2.4218 -3.8099 18 6 12.3390 -3.0980 -4.6621 19 1 12.9179 -3.9349 -4.3007 20 6 12.4378 -2.7078 -5.9906 21 7 12.0207 -1.5150 -6.3589 22 14 13.1626 -3.8755 -7.2557 23 1 13.5538 -5.1446 -6.5911 24 1 12.1513 -4.1575 -8.3058 25 1 14.3596 -3.2526 -7.8757 26 6 11.7923 -2.3708 -2.3695 27 6 10.5541 -2.8502 -1.6051 28 6 2.0699 -0.7788 -1.2172 29 1 -0.3633 0.4958 0.9002 30 1 -0.3633 0.5318 -0.8794 31 1 -0.3634 -1.0274 -0.0208 32 1 1.4580 -1.6600 1.4224 33 1 2.1251 -0.1381 2.1002 34 1 4.1897 -0.3706 0.8828 35 1 3.8326 -2.0707 1.3164 36 1 4.3736 -1.2333 -2.5867 37 1 4.7416 -0.0358 -1.3223 38 1 7.0462 -0.9948 -2.3387 39 1 8.2876 -2.3311 -0.1824 40 1 7.9187 -3.5285 -1.4467 41 1 9.7874 -0.3996 -0.6895 42 1 10.4874 -0.2190 -2.3157 43 1 8.7460 0.0487 -2.0617 44 1 8.9248 -3.2777 -3.7359 45 1 8.2137 -1.6482 -3.8332 46 1 10.4272 -0.6579 -4.1876 47 1 10.1814 -1.9635 -5.3760 48 1 12.0901 -1.2422 -7.2871 49 1 12.0273 -1.3467 -2.0795 50 1 12.6376 -3.0190 -2.1389 51 1 10.7177 -2.7270 -0.5346 52 1 10.3733 -3.9019 -1.8270 53 1 1.3176 -1.4823 -1.5740 54 1 2.3404 -0.0858 -2.0139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699863397.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:35 Heat of formation + Delta-G solvation = -69.826403 kcal Electronic energy + Delta-G solvation = -28224.633354 eV Core-core repulsion = 24580.469961 eV Total energy + Delta-G solvation = -3644.163394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.19450 -40.10788 -38.93449 -36.55538 -34.62430 -33.51511 -32.62455 -31.57532 -30.55765 -28.91940 -28.37524 -27.37026 -25.76958 -24.82262 -23.88840 -22.47544 -21.56679 -21.03925 -20.21981 -19.63004 -18.46383 -17.96370 -16.99457 -16.81291 -16.62040 -16.16251 -15.86576 -15.68802 -15.46135 -15.07312 -15.00763 -14.58407 -14.52156 -14.40128 -14.06732 -13.96940 -13.75270 -13.51265 -13.24567 -13.06869 -12.94548 -12.67640 -12.57866 -12.56087 -12.32617 -12.22929 -11.95360 -11.88062 -11.80062 -11.65036 -11.61004 -11.51106 -11.45313 -11.41035 -11.21840 -11.13349 -11.04283 -10.66911 -10.48943 -9.98244 -8.62753 -7.86302 -5.29536 1.44479 1.47144 1.56886 1.75251 2.32301 2.51409 3.27427 3.65087 3.70453 3.72788 3.81245 3.83071 3.88052 3.96223 4.08846 4.23787 4.37002 4.43431 4.52809 4.59804 4.62424 4.62860 4.68235 4.72645 4.77343 4.77757 4.82405 4.84023 4.86106 4.86867 4.96513 4.99484 5.05029 5.08182 5.14459 5.15470 5.21332 5.25441 5.28903 5.32610 5.38881 5.41011 5.41911 5.49763 5.52450 5.58572 5.59993 5.61994 5.68179 5.86253 6.41357 6.64326 7.17868 7.34715 7.90481 8.40614 9.19444 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.025687 B = 0.002238 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.783323 B =12509.356819 C =13018.920057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.079 0.921 4 C -0.120 4.120 5 C -0.113 4.113 6 C -0.075 4.075 7 H 0.056 0.944 8 C -0.130 4.130 9 C 0.506 3.494 10 O -0.583 6.583 11 N -0.719 5.719 12 C 0.142 3.858 13 C -0.053 4.053 14 C -0.135 4.135 15 C -0.116 4.116 16 C 0.178 3.822 17 N -0.610 5.610 18 C -0.260 4.260 19 H 0.061 0.939 20 C -0.050 4.050 21 N -0.931 5.931 22 Si 0.962 3.038 23 H -0.270 1.270 24 H -0.290 1.290 25 H -0.292 1.292 26 C 0.143 3.857 27 C -0.113 4.113 28 C -0.113 4.113 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.410 0.590 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.065 0.935 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.009 0.991 47 H 0.047 0.953 48 H 0.249 0.751 49 H 0.023 0.977 50 H 0.047 0.953 51 H 0.080 0.920 52 H 0.050 0.950 53 H 0.066 0.934 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.746 5.600 12.316 24.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.097 0.903 4 C -0.158 4.158 5 C -0.150 4.150 6 C -0.094 4.094 7 H 0.075 0.925 8 C -0.169 4.169 9 C 0.294 3.706 10 O -0.463 6.463 11 N -0.372 5.372 12 C 0.018 3.982 13 C -0.054 4.054 14 C -0.192 4.192 15 C -0.155 4.155 16 C 0.053 3.947 17 N -0.333 5.333 18 C -0.390 4.390 19 H 0.079 0.921 20 C -0.246 4.246 21 N -0.578 5.578 22 Si 0.790 3.210 23 H -0.195 1.195 24 H -0.217 1.217 25 H -0.219 1.219 26 C 0.017 3.983 27 C -0.152 4.152 28 C -0.151 4.151 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.248 0.752 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.089 0.911 46 H 0.027 0.973 47 H 0.066 0.934 48 H 0.058 0.942 49 H 0.041 0.959 50 H 0.065 0.935 51 H 0.098 0.902 52 H 0.069 0.931 53 H 0.085 0.915 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.796 5.047 12.767 24.919 hybrid contribution 0.987 -0.474 -1.278 1.683 sum -19.809 4.573 11.489 23.352 Atomic orbital electron populations 1.21794 0.94468 1.01770 1.02015 1.21972 0.95865 0.99256 0.94332 0.90290 1.22592 0.95504 0.99724 0.97970 1.22319 0.97100 1.00144 0.95463 1.21537 0.93556 0.99579 0.94750 0.92500 1.21911 0.91266 1.00941 1.02814 1.21333 0.84968 0.83603 0.80715 1.90665 1.85696 1.35809 1.34152 1.46102 1.08296 1.39723 1.43054 1.21215 0.84310 0.94452 0.98208 1.20551 0.93697 0.96614 0.94508 1.21857 1.01771 0.94070 1.01540 1.22045 0.98411 1.00163 0.94867 1.20608 0.84369 0.93010 0.96717 1.44300 1.24995 1.61512 1.02543 1.19507 1.20200 1.07677 0.91615 0.92098 1.25709 1.01364 0.97115 1.00403 1.70173 1.52836 1.18367 1.16390 0.85290 0.77336 0.79036 0.79295 1.19479 1.21686 1.21942 1.21039 0.95621 0.97732 0.83872 1.21890 0.94883 0.98777 0.99681 1.22352 0.95787 0.98857 0.98062 0.92420 0.92107 0.92919 0.91940 0.91330 0.92160 0.93552 0.87059 0.86716 0.75233 0.91744 0.93374 0.91773 0.93508 0.91617 0.94122 0.91094 0.97337 0.93446 0.94174 0.95935 0.93472 0.90156 0.93131 0.91504 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.12 71.98 0.66 -0.83 16 2 C -0.10 -1.16 3.46 -9.72 -0.03 -1.20 16 3 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 4 C -0.12 -1.79 6.33 31.88 0.20 -1.59 16 5 C -0.11 -2.13 5.35 31.67 0.17 -1.96 16 6 C -0.08 -1.31 2.57 -9.95 -0.03 -1.33 16 7 H 0.06 1.24 7.97 -2.39 -0.02 1.22 16 8 C -0.13 -2.04 4.85 29.85 0.14 -1.89 16 9 C 0.51 11.99 7.60 87.66 0.67 12.66 16 10 O -0.58 -18.59 14.75 -3.01 -0.04 -18.64 16 11 N -0.72 -16.10 4.95 -463.06 -2.29 -18.39 16 12 C 0.14 3.77 4.56 86.38 0.39 4.17 16 13 C -0.05 -1.55 0.53 -52.15 -0.03 -1.57 16 14 C -0.14 -3.61 7.54 71.98 0.54 -3.06 16 15 C -0.12 -4.01 4.75 30.68 0.15 -3.87 16 16 C 0.18 8.18 4.84 86.36 0.42 8.60 16 17 N -0.61 -29.95 2.99 -699.09 -2.09 -32.05 16 18 C -0.26 -14.27 9.59 84.03 0.81 -13.47 16 19 H 0.06 3.32 7.89 -2.92 -0.02 3.29 16 20 C -0.05 -2.81 4.91 84.86 0.42 -2.40 16 21 N -0.93 -54.32 11.19 21.65 0.24 -54.08 16 22 Si 0.96 45.00 29.59 68.60 2.03 47.03 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 C 0.14 5.74 6.05 86.36 0.52 6.26 16 27 C -0.11 -3.63 4.91 30.67 0.15 -3.48 16 28 C -0.11 -1.44 6.04 31.44 0.19 -1.25 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.57 8.11 -2.39 -0.02 0.55 16 32 H 0.06 0.96 8.06 -2.39 -0.02 0.94 16 33 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.06 1.11 7.78 -2.39 -0.02 1.10 16 35 H 0.05 1.12 7.59 -2.38 -0.02 1.10 16 36 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.11 1.33 8.04 -2.39 -0.02 1.31 16 38 H 0.41 7.59 6.16 -92.71 -0.57 7.02 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.05 1.53 4.98 -2.39 -0.01 1.52 16 43 H 0.06 1.47 6.86 -2.39 -0.02 1.45 16 44 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.07 2.07 6.82 -2.39 -0.02 2.05 16 46 H 0.01 0.41 6.69 -2.39 -0.02 0.39 16 47 H 0.05 2.53 6.04 -2.39 -0.01 2.51 16 48 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 49 H 0.02 0.91 6.69 -2.38 -0.02 0.89 16 50 H 0.05 1.90 7.94 -2.39 -0.02 1.88 16 51 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 52 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 53 H 0.07 0.85 7.81 -2.39 -0.02 0.83 16 54 H 0.08 0.80 7.69 -2.39 -0.02 0.79 16 Total: -1.00 -66.71 398.76 3.46 -63.25 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.28 Total: 19.09 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 5.34 Total: -6.21 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -4.14 Total: -104.51 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.04 Total: -18.64 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -66.71 3.46 -63.25 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699863397.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.577 kcal (2) G-P(sol) polarization free energy of solvation -66.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds