Wall clock time and date at job start Tue Mar 31 2020 15:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 110.43148 * 2 1 4 4 C 1.54885 * 110.48246 * 237.46120 * 2 1 3 5 5 C 1.54895 * 102.74629 * 203.37484 * 4 2 1 6 6 C 1.54263 * 104.19282 * 37.94492 * 5 4 2 7 7 H 1.09004 * 110.03375 * 95.67319 * 6 5 4 8 8 C 1.53004 * 110.03347 * 217.05414 * 6 5 4 9 9 C 1.50699 * 109.47009 * 293.55006 * 8 6 5 10 10 O 1.21279 * 119.99903 * 359.97438 * 9 8 6 11 11 N 1.34775 * 119.99965 * 180.02562 * 9 8 6 12 12 C 1.46494 * 120.00174 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47218 * 179.97438 * 12 11 9 14 14 C 1.52993 * 109.46207 * 60.02381 * 13 12 11 15 15 C 1.53047 * 109.45690 * 300.06610 * 13 12 11 16 16 C 1.53194 * 109.30958 * 178.61733 * 15 13 12 17 17 N 1.46926 * 108.77829 * 54.63593 * 16 15 13 18 18 C 1.36933 * 120.62808 * 126.41135 * 17 16 15 19 19 H 1.08004 * 119.99735 * 207.65473 * 18 17 16 20 20 C 1.38808 * 120.00305 * 27.66332 * 18 17 16 21 21 N 1.31621 * 119.99866 * 17.36979 * 20 18 17 22 22 Si 1.86805 * 120.00189 * 197.37634 * 20 18 17 23 23 H 1.48503 * 109.46994 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47409 * 119.99653 * 22 20 18 25 25 H 1.48505 * 109.46887 * 239.99922 * 22 20 18 26 26 C 1.46925 * 118.73663 * 306.38954 * 17 16 15 27 27 C 1.53041 * 109.45775 * 180.02562 * 13 12 11 28 28 C 1.53876 * 106.60362 * 336.38976 * 6 5 4 29 29 H 1.09001 * 109.46670 * 181.08627 * 1 2 3 30 30 H 1.08994 * 109.46967 * 61.08428 * 1 2 3 31 31 H 1.08997 * 109.46711 * 301.08076 * 1 2 3 32 32 H 1.08999 * 110.76406 * 321.69295 * 4 2 1 33 33 H 1.09001 * 110.75788 * 84.88303 * 4 2 1 34 34 H 1.08999 * 110.48576 * 156.62443 * 5 4 2 35 35 H 1.09001 * 110.48934 * 279.13521 * 5 4 2 36 36 H 1.09005 * 109.46674 * 53.55001 * 8 6 5 37 37 H 1.08996 * 109.47415 * 173.54647 * 8 6 5 38 38 H 0.97004 * 119.99800 * 359.97438 * 11 9 8 39 39 H 1.08995 * 109.47458 * 299.99575 * 12 11 9 40 40 H 1.09005 * 109.47212 * 60.00175 * 12 11 9 41 41 H 1.08999 * 109.46917 * 60.00466 * 14 13 12 42 42 H 1.08997 * 109.46999 * 179.97438 * 14 13 12 43 43 H 1.08997 * 109.47445 * 300.00343 * 14 13 12 44 44 H 1.09002 * 109.49865 * 298.56706 * 15 13 12 45 45 H 1.08995 * 109.49943 * 58.66378 * 15 13 12 46 46 H 1.09002 * 109.58128 * 294.84461 * 16 15 13 47 47 H 1.09003 * 109.58357 * 174.42623 * 16 15 13 48 48 H 0.97003 * 120.00046 * 179.97438 * 21 20 18 49 49 H 1.08999 * 109.58952 * 293.82123 * 26 17 16 50 50 H 1.09000 * 109.58500 * 173.39163 * 26 17 16 51 51 H 1.08998 * 109.49901 * 301.32990 * 27 13 12 52 52 H 1.08999 * 109.50157 * 61.43599 * 27 13 12 53 53 H 1.08994 * 110.03381 * 240.72057 * 28 6 5 54 54 H 1.08995 * 110.03472 * 119.28233 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7804 -1.2232 5 6 3.4908 -1.1969 -0.7616 6 6 3.3166 -1.5414 0.7320 7 1 3.1693 -2.6146 0.8530 8 6 4.5472 -1.0895 1.5210 9 6 5.7419 -1.9053 1.0990 10 8 5.6210 -2.7639 0.2511 11 7 6.9446 -1.6814 1.6647 12 6 8.1059 -2.4748 1.2549 13 6 9.3364 -2.0228 2.0439 14 6 9.0847 -2.2228 3.5396 15 6 9.6046 -0.5418 1.7659 16 6 10.8163 -0.0842 2.5839 17 7 11.9503 -0.9692 2.2850 18 6 13.1508 -0.4516 1.8778 19 1 13.8082 -1.0387 1.2536 20 6 13.5231 0.8277 2.2674 21 7 12.9160 1.4101 3.2796 22 14 14.8854 1.7227 1.3549 23 1 15.4029 0.8570 0.2649 24 1 14.3500 2.9810 0.7763 25 1 15.9870 2.0412 2.2987 26 6 11.7718 -2.4202 2.4319 27 6 10.5496 -2.8514 1.6151 28 6 2.0700 -0.7804 1.2163 29 1 -0.3633 -1.0275 0.0195 30 1 -0.3633 0.4969 -0.8995 31 1 -0.3632 0.5305 0.8801 32 1 1.4581 -1.6582 -1.4245 33 1 2.1221 -0.1363 -2.1011 34 1 3.8317 -2.0704 -1.3174 35 1 4.1903 -0.3702 -0.8854 36 1 4.7388 -0.0349 1.3226 37 1 4.3680 -1.2319 2.5867 38 1 7.0411 -0.9949 2.3432 39 1 7.9139 -3.5292 1.4533 40 1 8.2855 -2.3323 0.1892 41 1 8.8931 -3.2774 3.7379 42 1 9.9615 -1.9013 4.1018 43 1 8.2205 -1.6329 3.8448 44 1 9.8085 -0.4021 0.7043 45 1 8.7313 0.0455 2.0494 46 1 10.5809 -0.1380 3.6468 47 1 11.0721 0.9409 2.3157 48 1 13.1764 2.3039 3.5521 49 1 11.6145 -2.6645 3.4824 50 1 12.6582 -2.9365 2.0632 51 1 10.3491 -3.9081 1.7914 52 1 10.7445 -2.6894 0.5550 53 1 2.3412 -0.0883 2.0134 54 1 1.3177 -1.4843 1.5722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699863398.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:39 Heat of formation + Delta-G solvation = -69.835021 kcal Electronic energy + Delta-G solvation = -28261.320244 eV Core-core repulsion = 24617.156477 eV Total energy + Delta-G solvation = -3644.163767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.19668 -40.11403 -38.94714 -36.55630 -34.62429 -33.51809 -32.62569 -31.57556 -30.56825 -28.92598 -28.37666 -27.37150 -25.76773 -24.82725 -23.88764 -22.47680 -21.57138 -21.04575 -20.21690 -19.63077 -18.47230 -17.95909 -16.99712 -16.81819 -16.58181 -16.18217 -15.97289 -15.55395 -15.50463 -15.07692 -15.02514 -14.56797 -14.47640 -14.41820 -14.15163 -13.95140 -13.74571 -13.50421 -13.21537 -13.08968 -12.94780 -12.67557 -12.58678 -12.55786 -12.32576 -12.22851 -11.96326 -11.88452 -11.80044 -11.65747 -11.60873 -11.51861 -11.45078 -11.42095 -11.21646 -11.13260 -11.04398 -10.66885 -10.48921 -9.98216 -8.62878 -7.86350 -5.29578 1.44410 1.47076 1.56816 1.75318 2.32485 2.51347 3.27395 3.65308 3.69657 3.72812 3.81140 3.82837 3.87967 3.96123 4.08575 4.23724 4.36959 4.43340 4.52767 4.59063 4.62179 4.62927 4.68761 4.72392 4.76854 4.77836 4.82071 4.84281 4.85483 4.87349 4.96514 4.98952 5.04823 5.08063 5.14592 5.14858 5.20993 5.24632 5.29029 5.32578 5.38415 5.40969 5.41742 5.49715 5.52465 5.58433 5.59918 5.61426 5.68097 5.86200 6.41275 6.64370 7.17809 7.34780 7.90433 8.40580 9.19399 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.020324 B = 0.002341 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.321864 B =11955.281472 C =12568.675599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.076 0.924 4 C -0.121 4.121 5 C -0.114 4.114 6 C -0.074 4.074 7 H 0.061 0.939 8 C -0.130 4.130 9 C 0.505 3.495 10 O -0.583 6.583 11 N -0.719 5.719 12 C 0.142 3.858 13 C -0.053 4.053 14 C -0.135 4.135 15 C -0.115 4.115 16 C 0.178 3.822 17 N -0.610 5.610 18 C -0.259 4.259 19 H 0.061 0.939 20 C -0.050 4.050 21 N -0.931 5.931 22 Si 0.961 3.039 23 H -0.270 1.270 24 H -0.290 1.290 25 H -0.292 1.292 26 C 0.143 3.857 27 C -0.113 4.113 28 C -0.112 4.112 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.410 0.590 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.065 0.935 44 H 0.040 0.960 45 H 0.070 0.930 46 H 0.009 0.991 47 H 0.047 0.953 48 H 0.249 0.751 49 H 0.023 0.977 50 H 0.047 0.953 51 H 0.080 0.920 52 H 0.050 0.950 53 H 0.079 0.921 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.746 -4.047 -2.160 24.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.094 0.906 4 C -0.158 4.158 5 C -0.152 4.152 6 C -0.093 4.093 7 H 0.079 0.921 8 C -0.170 4.170 9 C 0.294 3.706 10 O -0.463 6.463 11 N -0.372 5.372 12 C 0.018 3.982 13 C -0.054 4.054 14 C -0.193 4.193 15 C -0.154 4.154 16 C 0.053 3.947 17 N -0.334 5.334 18 C -0.390 4.390 19 H 0.079 0.921 20 C -0.246 4.246 21 N -0.578 5.578 22 Si 0.790 3.210 23 H -0.195 1.195 24 H -0.217 1.217 25 H -0.219 1.219 26 C 0.017 3.983 27 C -0.152 4.152 28 C -0.149 4.149 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.248 0.752 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.027 0.973 47 H 0.066 0.934 48 H 0.058 0.942 49 H 0.041 0.959 50 H 0.065 0.935 51 H 0.099 0.901 52 H 0.069 0.931 53 H 0.098 0.902 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.773 -4.525 -2.690 24.349 hybrid contribution 1.418 0.882 -0.151 1.677 sum -22.355 -3.643 -2.842 22.827 Atomic orbital electron populations 1.21794 0.94358 1.01857 1.01985 1.21979 0.95967 0.99170 0.94428 0.90590 1.22590 0.95512 0.99780 0.97943 1.22328 0.97039 1.00021 0.95826 1.21473 0.93574 0.99798 0.94421 0.92087 1.21921 0.91283 1.00689 1.03073 1.21336 0.85005 0.83609 0.80677 1.90667 1.85752 1.35925 1.33981 1.46102 1.08264 1.39751 1.43063 1.21214 0.84249 0.94990 0.97734 1.20552 0.93409 0.95289 0.96127 1.21857 1.01486 1.01883 0.94034 1.22040 0.98422 0.95449 0.99535 1.20608 0.85277 0.94244 0.94582 1.44303 1.08834 1.01312 1.78911 1.19508 0.96724 0.99389 1.23378 0.92097 1.25706 1.00954 1.00384 0.97527 1.70173 1.45725 1.15021 1.26860 0.85295 0.78980 0.78440 0.78268 1.19477 1.21688 1.21926 1.21048 0.96146 0.84421 0.96658 1.21892 0.94650 0.99120 0.99570 1.22287 0.95826 0.98886 0.97939 0.92732 0.92581 0.92027 0.91731 0.91633 0.93531 0.92621 0.87247 0.86526 0.75237 0.91716 0.93406 0.91750 0.93508 0.91603 0.94152 0.91119 0.97341 0.93446 0.94172 0.95907 0.93473 0.90136 0.93141 0.90193 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.12 71.98 0.66 -0.86 16 2 C -0.10 -1.24 3.46 -9.72 -0.03 -1.27 16 3 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.12 -1.90 6.33 31.89 0.20 -1.70 16 5 C -0.11 -2.29 5.36 31.67 0.17 -2.12 16 6 C -0.07 -1.27 2.55 -10.07 -0.03 -1.30 16 7 H 0.06 1.27 7.97 -2.39 -0.02 1.25 16 8 C -0.13 -2.04 4.83 29.85 0.14 -1.89 16 9 C 0.51 11.99 7.60 87.66 0.67 12.65 16 10 O -0.58 -18.58 14.75 -3.03 -0.04 -18.63 16 11 N -0.72 -16.11 4.95 -463.07 -2.29 -18.40 16 12 C 0.14 3.77 4.56 86.38 0.39 4.17 16 13 C -0.05 -1.55 0.53 -52.15 -0.03 -1.58 16 14 C -0.14 -3.61 7.54 71.98 0.54 -3.07 16 15 C -0.12 -4.00 4.75 30.67 0.15 -3.86 16 16 C 0.18 8.18 4.84 86.36 0.42 8.60 16 17 N -0.61 -29.97 2.99 -699.08 -2.09 -32.06 16 18 C -0.26 -14.27 9.58 84.03 0.81 -13.47 16 19 H 0.06 3.32 7.89 -2.91 -0.02 3.30 16 20 C -0.05 -2.80 4.91 84.86 0.42 -2.39 16 21 N -0.93 -54.35 11.19 21.65 0.24 -54.11 16 22 Si 0.96 45.00 29.59 68.60 2.03 47.03 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 26 C 0.14 5.73 6.05 86.37 0.52 6.26 16 27 C -0.11 -3.63 4.91 30.68 0.15 -3.48 16 28 C -0.11 -1.40 6.03 31.32 0.19 -1.21 16 29 H 0.05 0.58 8.11 -2.39 -0.02 0.57 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 32 H 0.06 1.02 8.06 -2.39 -0.02 1.00 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.05 1.17 7.60 -2.39 -0.02 1.15 16 35 H 0.06 1.15 7.79 -2.39 -0.02 1.13 16 36 H 0.11 1.40 8.04 -2.38 -0.02 1.39 16 37 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.41 7.60 6.16 -92.71 -0.57 7.03 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.05 1.53 4.98 -2.39 -0.01 1.52 16 43 H 0.07 1.47 6.86 -2.39 -0.02 1.45 16 44 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 45 H 0.07 2.07 6.82 -2.39 -0.02 2.05 16 46 H 0.01 0.41 6.69 -2.39 -0.02 0.39 16 47 H 0.05 2.53 6.04 -2.39 -0.01 2.51 16 48 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 49 H 0.02 0.92 6.69 -2.39 -0.02 0.90 16 50 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 51 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 52 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 53 H 0.08 0.79 7.67 -2.39 -0.02 0.77 16 54 H 0.07 0.83 7.81 -2.39 -0.02 0.81 16 Total: -1.00 -66.76 398.72 3.46 -63.30 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.28 Total: 19.38 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 5.34 Total: -6.51 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -4.14 Total: -104.57 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.04 Total: -18.63 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -66.76 3.46 -63.30 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699863398.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.539 kcal (2) G-P(sol) polarization free energy of solvation -66.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds