Wall clock time and date at job start Tue Mar 31 2020 15:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.02175 * 2 1 4 4 C 1.53876 * 110.07607 * 121.41832 * 2 1 3 5 5 C 1.54265 * 106.60117 * 119.30313 * 4 2 1 6 6 C 1.54895 * 104.19485 * 23.61246 * 5 4 2 7 7 H 1.09000 * 110.91119 * 80.44115 * 6 5 4 8 8 C 1.52996 * 110.75690 * 203.74204 * 6 5 4 9 9 C 1.50698 * 109.47012 * 288.32573 * 8 6 5 10 10 O 1.21282 * 120.00207 * 0.02562 * 9 8 6 11 11 N 1.34780 * 119.99681 * 179.97438 * 9 8 6 12 12 C 1.46512 * 119.99581 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46486 * 180.02562 * 12 11 9 14 14 C 1.52992 * 109.46223 * 299.97262 * 13 12 11 15 15 C 1.53041 * 109.45153 * 179.97438 * 13 12 11 16 16 C 1.53201 * 109.33508 * 178.61463 * 15 13 12 17 17 N 1.46998 * 108.73728 * 54.61891 * 16 15 13 18 18 C 1.36935 * 120.60901 * 126.38876 * 17 16 15 19 19 H 1.07998 * 119.99952 * 207.67649 * 18 17 16 20 20 C 1.38815 * 119.99918 * 27.68672 * 18 17 16 21 21 N 1.31614 * 120.00332 * 17.35531 * 20 18 17 22 22 Si 1.86808 * 119.99812 * 197.35895 * 20 18 17 23 23 H 1.48506 * 109.46866 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47167 * 119.99620 * 22 20 18 25 25 H 1.48494 * 109.47081 * 240.00049 * 22 20 18 26 26 C 1.46917 * 118.75901 * 306.41085 * 17 16 15 27 27 C 1.53042 * 109.44926 * 59.94334 * 13 12 11 28 28 C 1.54269 * 110.03358 * 238.61092 * 2 1 3 29 29 H 1.08995 * 109.47167 * 181.39062 * 1 2 3 30 30 H 1.09001 * 109.46764 * 301.39195 * 1 2 3 31 31 H 1.09002 * 109.47017 * 61.38657 * 1 2 3 32 32 H 1.08999 * 110.03667 * 238.59169 * 4 2 1 33 33 H 1.09008 * 110.02767 * 0.02562 * 4 2 1 34 34 H 1.08997 * 110.48690 * 264.93898 * 5 4 2 35 35 H 1.09000 * 110.48828 * 142.29266 * 5 4 2 36 36 H 1.09005 * 109.46801 * 168.33116 * 8 6 5 37 37 H 1.09000 * 109.47221 * 48.32780 * 8 6 5 38 38 H 0.96997 * 120.00117 * 0.02562 * 11 9 8 39 39 H 1.08995 * 109.46676 * 60.00529 * 12 11 9 40 40 H 1.09000 * 109.47110 * 300.00224 * 12 11 9 41 41 H 1.09007 * 109.47026 * 300.02993 * 14 13 12 42 42 H 1.08995 * 109.47306 * 60.02849 * 14 13 12 43 43 H 1.09000 * 109.47195 * 180.02562 * 14 13 12 44 44 H 1.08997 * 109.50147 * 298.57816 * 15 13 12 45 45 H 1.09000 * 109.50014 * 58.65289 * 15 13 12 46 46 H 1.08996 * 109.58609 * 174.44365 * 16 15 13 47 47 H 1.09008 * 109.58351 * 294.86740 * 16 15 13 48 48 H 0.97007 * 120.00009 * 179.97438 * 21 20 18 49 49 H 1.09006 * 109.58747 * 293.82170 * 26 17 16 50 50 H 1.09000 * 109.58776 * 173.39572 * 26 17 16 51 51 H 1.08999 * 109.49529 * 301.32469 * 27 13 12 52 52 H 1.08999 * 109.49936 * 61.38808 * 27 13 12 53 53 H 1.08997 * 110.48916 * 98.37730 * 28 2 1 54 54 H 1.09001 * 110.59467 * 335.79066 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0582 -0.7534 1.2334 5 6 2.8891 -1.9399 0.7027 6 6 3.3144 -1.4995 -0.7202 7 1 4.1720 -0.8280 -0.6795 8 6 3.6220 -2.7163 -1.5951 9 6 4.9141 -3.3464 -1.1430 10 8 5.5282 -2.8695 -0.2122 11 7 5.3867 -4.4405 -1.7723 12 6 6.6426 -5.0534 -1.3323 13 6 6.9502 -6.2702 -2.2075 14 6 5.8150 -7.2882 -2.0822 15 6 8.2624 -6.9097 -1.7480 16 6 8.5501 -8.1477 -2.6035 17 7 8.5320 -7.7571 -4.0205 18 6 9.5939 -8.0432 -4.8363 19 1 9.8024 -7.4168 -5.6910 20 6 10.4025 -9.1384 -4.5647 21 7 9.9769 -10.0865 -3.7571 22 14 12.0948 -9.2664 -5.3454 23 1 12.3335 -8.0805 -6.2068 24 1 13.1283 -9.3213 -4.2805 25 1 12.1675 -10.4992 -6.1699 26 6 7.3535 -7.0537 -4.5448 27 6 7.0802 -5.8283 -3.6669 28 6 2.0585 -0.7549 -1.2372 29 1 -0.3633 -1.0273 0.0249 30 1 -0.3633 0.5353 0.8773 31 1 -0.3633 0.4922 -0.9022 32 1 2.6876 -0.0949 1.8320 33 1 1.2244 -1.1198 1.8324 34 1 2.2793 -2.8421 0.6563 35 1 3.7657 -2.1025 1.3297 36 1 3.7153 -2.4019 -2.6347 37 1 2.8133 -3.4416 -1.5060 38 1 4.8953 -4.8221 -2.5165 39 1 6.5489 -5.3674 -0.2928 40 1 7.4515 -4.3283 -1.4214 41 1 5.7215 -7.6021 -1.0425 42 1 4.8806 -6.8325 -2.4096 43 1 6.0342 -8.1553 -2.7053 44 1 9.0757 -6.1928 -1.8606 45 1 8.1777 -7.2025 -0.7015 46 1 9.5303 -8.5494 -2.3468 47 1 7.7848 -8.9026 -2.4228 48 1 10.5418 -10.8520 -3.5677 49 1 6.4906 -7.7195 -4.5224 50 1 7.5444 -6.7340 -5.5692 51 1 6.1536 -5.3516 -3.9866 52 1 7.9044 -5.1213 -3.7610 53 1 2.3289 -0.0527 -2.0258 54 1 1.3155 -1.4657 -1.5989 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699863399.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:43 Heat of formation + Delta-G solvation = -70.541579 kcal Electronic energy + Delta-G solvation = -28133.918246 eV Core-core repulsion = 24489.723840 eV Total energy + Delta-G solvation = -3644.194406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.16879 -40.08691 -38.97475 -36.56524 -34.57679 -33.53000 -32.74525 -31.48304 -30.49823 -28.94416 -28.39315 -27.41020 -25.78398 -24.86130 -23.86276 -22.49404 -21.58477 -20.78090 -20.40679 -19.61373 -18.39856 -17.87045 -17.05507 -16.95839 -16.58741 -16.40488 -15.74277 -15.51593 -15.26742 -15.14650 -15.02846 -14.84869 -14.55682 -14.23524 -14.17805 -13.97360 -13.69291 -13.49169 -13.12077 -13.01716 -12.94046 -12.74051 -12.69010 -12.57863 -12.31967 -12.18924 -11.93803 -11.88953 -11.80681 -11.71746 -11.56063 -11.51815 -11.41832 -11.37816 -11.24161 -11.14079 -11.02197 -10.68283 -10.48823 -9.98442 -8.63115 -7.86243 -5.29624 1.44444 1.47113 1.56763 1.76720 2.31918 2.51370 3.27864 3.65007 3.70041 3.72542 3.81306 3.85313 3.86461 3.97572 4.07941 4.29361 4.39753 4.43289 4.53396 4.54334 4.60282 4.62595 4.73283 4.74829 4.75157 4.78892 4.82312 4.83857 4.85229 4.87921 4.95964 4.98288 5.06156 5.07298 5.14670 5.16265 5.20208 5.25675 5.27179 5.34231 5.38109 5.41462 5.46117 5.49800 5.54864 5.57433 5.57906 5.63975 5.67611 5.84730 6.41055 6.66738 7.17277 7.37222 7.90487 8.40725 9.19667 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.038156 B = 0.002073 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.656154 B =13502.217125 C =13625.387800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.067 0.933 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.077 4.077 7 H 0.060 0.940 8 C -0.127 4.127 9 C 0.505 3.495 10 O -0.586 6.586 11 N -0.716 5.716 12 C 0.143 3.857 13 C -0.052 4.052 14 C -0.135 4.135 15 C -0.121 4.121 16 C 0.181 3.819 17 N -0.610 5.610 18 C -0.258 4.258 19 H 0.064 0.936 20 C -0.052 4.052 21 N -0.933 5.933 22 Si 0.962 3.038 23 H -0.268 1.268 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.141 3.859 27 C -0.109 4.109 28 C -0.109 4.109 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.413 0.587 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.007 0.993 48 H 0.249 0.751 49 H 0.025 0.975 50 H 0.048 0.952 51 H 0.086 0.914 52 H 0.046 0.954 53 H 0.071 0.929 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.600 17.645 5.388 27.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.085 0.915 4 C -0.159 4.159 5 C -0.155 4.155 6 C -0.096 4.096 7 H 0.078 0.922 8 C -0.167 4.167 9 C 0.293 3.707 10 O -0.467 6.467 11 N -0.369 5.369 12 C 0.018 3.982 13 C -0.053 4.053 14 C -0.192 4.192 15 C -0.160 4.160 16 C 0.055 3.945 17 N -0.334 5.334 18 C -0.389 4.389 19 H 0.081 0.919 20 C -0.247 4.247 21 N -0.580 5.580 22 Si 0.791 3.209 23 H -0.193 1.193 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.015 3.985 27 C -0.148 4.148 28 C -0.147 4.147 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.250 0.750 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.025 0.975 48 H 0.058 0.942 49 H 0.043 0.957 50 H 0.067 0.933 51 H 0.104 0.896 52 H 0.065 0.935 53 H 0.090 0.910 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.095 17.846 6.061 27.551 hybrid contribution 1.419 -0.831 -0.436 1.701 sum -18.676 17.016 5.626 25.884 Atomic orbital electron populations 1.21857 0.94101 1.02015 1.01894 1.21740 0.96347 0.99119 0.94515 0.91478 1.22230 0.99168 0.96776 0.97692 1.22366 0.98652 0.98187 0.96278 1.21832 0.97926 0.95423 0.94396 0.92178 1.21767 0.94009 0.98516 1.02373 1.21387 0.87717 0.79724 0.81825 1.90677 1.61494 1.63722 1.30767 1.46049 1.24734 1.29561 1.36565 1.21175 0.85895 0.93610 0.97473 1.20532 0.95550 0.94154 0.95047 1.21858 0.97250 0.98528 1.01598 1.22026 0.96439 0.98543 0.99009 1.20566 0.98995 0.92228 0.82713 1.44311 1.16105 1.67133 1.05811 1.19523 1.04634 1.05980 1.08725 0.91856 1.25730 1.03059 0.94934 1.01011 1.70178 1.36695 1.09563 1.41543 0.85288 0.80590 0.77427 0.77645 1.19251 1.21924 1.21910 1.21097 0.88859 0.92563 0.95936 1.21925 1.01243 0.97522 0.94114 1.22494 0.96052 0.98988 0.97142 0.92365 0.92737 0.92102 0.92885 0.91260 0.91427 0.93719 0.86555 0.86542 0.74965 0.92483 0.93327 0.92757 0.90660 0.93470 0.93654 0.91783 0.93532 0.97508 0.94233 0.95672 0.93330 0.89578 0.93514 0.90990 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.84 71.98 0.64 -0.73 16 2 C -0.10 -1.21 3.50 -10.07 -0.04 -1.25 16 3 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.12 -1.82 6.46 31.32 0.20 -1.61 16 5 C -0.12 -2.11 5.76 31.67 0.18 -1.93 16 6 C -0.08 -1.25 2.45 -9.50 -0.02 -1.27 16 7 H 0.06 1.27 7.88 -2.39 -0.02 1.25 16 8 C -0.13 -1.76 5.20 29.85 0.16 -1.60 16 9 C 0.51 11.37 7.66 87.66 0.67 12.04 16 10 O -0.59 -18.59 14.84 -3.03 -0.05 -18.63 16 11 N -0.72 -14.82 4.95 -463.03 -2.29 -17.11 16 12 C 0.14 3.80 4.56 86.38 0.39 4.20 16 13 C -0.05 -1.52 0.53 -52.15 -0.03 -1.55 16 14 C -0.14 -3.60 7.54 71.98 0.54 -3.06 16 15 C -0.12 -4.45 4.90 30.68 0.15 -4.30 16 16 C 0.18 8.54 4.85 86.35 0.42 8.96 16 17 N -0.61 -29.90 3.00 -698.90 -2.09 -31.99 16 18 C -0.26 -14.16 9.59 84.03 0.81 -13.36 16 19 H 0.06 3.41 7.89 -2.91 -0.02 3.39 16 20 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16 21 N -0.93 -55.22 11.19 21.65 0.24 -54.98 16 22 Si 0.96 45.23 29.59 68.60 2.03 47.26 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 26 C 0.14 5.44 6.05 86.36 0.52 5.96 16 27 C -0.11 -3.27 4.75 30.67 0.15 -3.12 16 28 C -0.11 -1.25 5.80 31.67 0.18 -1.06 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.93 7.67 -2.38 -0.02 0.91 16 34 H 0.07 1.09 7.93 -2.39 -0.02 1.07 16 35 H 0.04 1.07 7.38 -2.39 -0.02 1.05 16 36 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.12 1.10 7.99 -2.39 -0.02 1.08 16 38 H 0.41 6.32 6.16 -92.71 -0.57 5.75 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.07 1.50 6.86 -2.39 -0.02 1.49 16 43 H 0.05 1.54 4.98 -2.39 -0.01 1.53 16 44 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.06 2.16 8.14 -2.39 -0.02 2.15 16 46 H 0.05 2.56 6.04 -2.39 -0.01 2.54 16 47 H 0.01 0.34 6.69 -2.38 -0.02 0.33 16 48 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 49 H 0.03 0.96 6.69 -2.38 -0.02 0.95 16 50 H 0.05 1.87 7.93 -2.39 -0.02 1.86 16 51 H 0.09 1.92 6.82 -2.39 -0.02 1.90 16 52 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 53 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 54 H 0.08 0.73 7.76 -2.39 -0.02 0.72 16 Total: -1.00 -68.39 399.07 3.47 -64.92 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.28 Total: 16.72 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 5.34 Total: -6.19 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -4.14 Total: -104.09 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.05 Total: -18.63 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -68.39 3.47 -64.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699863399.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.620 kcal (2) G-P(sol) polarization free energy of solvation -68.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds