Wall clock time and date at job start Tue Mar 31 2020 15:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 110.43187 * 2 1 4 4 C 1.54885 * 110.48350 * 122.53611 * 2 1 3 5 5 C 1.54892 * 102.74939 * 156.75751 * 4 2 1 6 6 C 1.54269 * 104.19325 * 322.05723 * 5 4 2 7 7 C 1.52998 * 110.03434 * 142.94174 * 6 5 4 8 8 C 1.50704 * 110.03534 * 264.32577 * 6 5 4 9 9 O 1.21274 * 120.00083 * 122.20917 * 8 6 5 10 10 N 1.34776 * 119.99615 * 302.21886 * 8 6 5 11 11 C 1.47426 * 125.65017 * 354.58504 * 10 8 6 12 12 C 1.54905 * 104.83124 * 155.91641 * 11 10 8 13 13 C 1.55156 * 101.58471 * 37.01246 * 12 11 10 14 14 C 1.47485 * 125.59137 * 174.61680 * 10 8 6 15 15 H 1.09002 * 109.96236 * 300.32613 * 14 10 8 16 16 C 1.52998 * 110.03568 * 61.63702 * 14 10 8 17 17 N 1.46497 * 109.47461 * 178.46887 * 16 14 10 18 18 C 1.36940 * 119.99976 * 185.01254 * 17 16 14 19 19 H 1.07993 * 120.00014 * 4.99959 * 18 17 16 20 20 C 1.38812 * 119.99748 * 184.99645 * 18 17 16 21 21 N 1.31618 * 120.00162 * 184.96547 * 20 18 17 22 22 Si 1.86806 * 120.00197 * 4.96916 * 20 18 17 23 23 H 1.48498 * 109.46977 * 94.90256 * 22 20 18 24 24 H 1.48495 * 109.46908 * 214.90617 * 22 20 18 25 25 H 1.48497 * 109.46821 * 334.90142 * 22 20 18 26 26 C 1.53873 * 106.59673 * 23.60795 * 6 5 4 27 27 C 1.53010 * 110.03047 * 119.28409 * 26 6 5 28 28 C 1.53004 * 110.03354 * 240.71174 * 26 6 5 29 29 H 1.08995 * 109.47156 * 298.91384 * 1 2 3 30 30 H 1.08997 * 109.46919 * 58.91739 * 1 2 3 31 31 H 1.09002 * 109.46699 * 178.91189 * 1 2 3 32 32 H 1.09002 * 110.75925 * 38.44450 * 4 2 1 33 33 H 1.08999 * 110.91795 * 275.14243 * 4 2 1 34 34 H 1.09001 * 110.48943 * 203.38649 * 5 4 2 35 35 H 1.08997 * 110.48635 * 80.73417 * 5 4 2 36 36 H 1.09001 * 109.47270 * 182.09095 * 7 6 5 37 37 H 1.09003 * 109.47040 * 302.09345 * 7 6 5 38 38 H 1.09001 * 109.46965 * 62.09167 * 7 6 5 39 39 H 1.09002 * 110.36393 * 37.08088 * 11 10 8 40 40 H 1.09003 * 110.37037 * 274.75632 * 11 10 8 41 41 H 1.08998 * 111.00632 * 278.93354 * 12 11 10 42 42 H 1.08998 * 111.03743 * 155.09862 * 12 11 10 43 43 H 1.09001 * 110.72040 * 82.85464 * 13 12 11 44 44 H 1.08993 * 110.72582 * 205.95917 * 13 12 11 45 45 H 1.09001 * 109.47147 * 298.47724 * 16 14 10 46 46 H 1.09001 * 109.47025 * 58.46648 * 16 14 10 47 47 H 0.96999 * 119.99794 * 5.01280 * 17 16 14 48 48 H 0.96996 * 120.00644 * 180.02562 * 21 20 18 49 49 H 1.08999 * 109.46505 * 60.00230 * 27 26 6 50 50 H 1.08998 * 109.46886 * 179.97438 * 27 26 6 51 51 H 1.08994 * 109.46793 * 299.99967 * 27 26 6 52 52 H 1.08999 * 109.46568 * 57.77834 * 28 26 6 53 53 H 1.08999 * 109.46985 * 177.77488 * 28 26 6 54 54 H 1.08992 * 109.47213 * 297.77862 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0721 -0.7804 1.2232 5 6 3.4920 -1.1939 0.7630 6 6 3.3203 -1.5376 -0.7311 7 6 4.5509 -1.0828 -1.5183 8 6 3.1196 -3.0216 -0.8998 9 8 2.1211 -3.4402 -1.4463 10 7 4.0495 -3.8836 -0.4431 11 6 5.3539 -3.5132 0.1357 12 6 5.7452 -4.7142 1.0324 13 6 5.2201 -5.9112 0.1965 14 6 3.9299 -5.3536 -0.4408 15 1 3.0645 -5.6556 0.1492 16 6 3.7921 -5.8705 -1.8742 17 7 3.7109 -7.3332 -1.8602 18 6 3.6864 -8.0289 -3.0394 19 1 3.8081 -7.5069 -3.9770 20 6 3.5052 -9.4051 -3.0297 21 7 3.5790 -10.0866 -4.1533 22 14 3.1564 -10.2899 -1.4219 23 1 1.6897 -10.4498 -1.2530 24 1 3.8010 -11.6275 -1.4431 25 1 3.7013 -9.4958 -0.2916 26 6 2.0729 -0.7785 -1.2161 27 6 2.4532 0.1946 -2.3340 28 6 1.0193 -1.7680 -1.7179 29 1 -0.3633 0.4968 0.8995 30 1 -0.3633 0.5305 -0.8801 31 1 -0.3633 -1.0275 -0.0195 32 1 1.4594 -1.6595 1.4230 33 1 2.1227 -0.1387 2.1029 34 1 3.8338 -2.0673 1.3184 35 1 4.1894 -0.3653 0.8862 36 1 4.4042 -1.2962 -2.5771 37 1 4.6949 -0.0112 -1.3802 38 1 5.4303 -1.6169 -1.1584 39 1 5.2596 -2.6074 0.7347 40 1 6.0927 -3.3721 -0.6532 41 1 5.2421 -4.6612 1.9979 42 1 6.8262 -4.7713 1.1601 43 1 5.9405 -6.1902 -0.5724 44 1 4.9958 -6.7620 0.8398 45 1 2.8872 -5.4606 -2.3228 46 1 4.6592 -5.5603 -2.4572 47 1 3.6745 -7.8088 -1.0156 48 1 3.4521 -11.0482 -4.1466 49 1 2.8819 -0.3604 -3.1684 50 1 1.5635 0.7267 -2.6708 51 1 3.1849 0.9103 -1.9593 52 1 0.7660 -2.4651 -0.9191 53 1 0.1253 -1.2237 -2.0221 54 1 1.4159 -2.3202 -2.5697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715212105.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:22 Heat of formation + Delta-G solvation = -6.898855 kcal Electronic energy + Delta-G solvation = -30301.005063 eV Core-core repulsion = 26659.570413 eV Total energy + Delta-G solvation = -3641.434650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.48977 -40.04995 -38.25465 -36.67866 -34.58291 -33.56001 -33.26439 -32.04435 -30.66522 -28.94520 -28.28675 -26.97375 -25.72384 -24.62492 -24.26029 -23.46932 -22.16940 -21.55251 -20.49832 -19.48011 -19.07188 -17.72557 -17.18725 -16.86437 -16.53768 -16.18713 -15.78250 -15.40412 -15.30035 -15.16204 -14.98980 -14.77302 -14.47272 -14.40430 -14.25763 -14.03377 -13.80283 -13.65713 -13.31303 -13.26221 -13.20508 -12.90392 -12.69856 -12.60731 -12.42044 -12.15263 -12.13277 -12.02102 -11.90720 -11.83272 -11.71967 -11.66637 -11.58040 -11.40251 -11.26624 -11.17895 -11.05027 -10.98869 -9.61747 -9.51328 -9.32656 -8.08882 -5.44136 1.30826 1.39059 1.45029 1.68854 1.98656 2.43149 3.21380 3.35042 3.45784 3.57499 3.63028 3.74994 3.76589 3.95415 4.08613 4.18996 4.24230 4.27719 4.30598 4.37941 4.45153 4.48958 4.52605 4.55660 4.66213 4.69635 4.76716 4.81429 4.83506 4.89845 4.92638 4.94476 5.00266 5.02359 5.05838 5.09439 5.12680 5.15487 5.16920 5.23702 5.26377 5.26882 5.32307 5.37599 5.39692 5.50863 5.52468 5.62020 5.67697 5.78170 6.14070 6.66876 7.00190 7.32012 7.73039 7.97698 9.12950 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.017340 B = 0.003653 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.342459 B = 7663.409174 C = 8241.133226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 H 0.098 0.902 4 C -0.120 4.120 5 C -0.113 4.113 6 C -0.065 4.065 7 C -0.143 4.143 8 C 0.514 3.486 9 O -0.558 6.558 10 N -0.610 5.610 11 C 0.083 3.917 12 C -0.119 4.119 13 C -0.125 4.125 14 C 0.135 3.865 15 H 0.058 0.942 16 C 0.158 3.842 17 N -0.750 5.750 18 C -0.242 4.242 19 H 0.045 0.955 20 C -0.060 4.060 21 N -0.982 5.982 22 Si 0.963 3.037 23 H -0.285 1.285 24 H -0.286 1.286 25 H -0.244 1.244 26 C -0.051 4.051 27 C -0.136 4.136 28 C -0.096 4.096 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.042 0.958 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.005 0.995 46 H 0.016 0.984 47 H 0.370 0.630 48 H 0.261 0.739 49 H 0.042 0.958 50 H 0.054 0.946 51 H 0.083 0.917 52 H 0.044 0.956 53 H 0.019 0.981 54 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.499 26.993 17.829 32.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 H 0.116 0.884 4 C -0.157 4.157 5 C -0.150 4.150 6 C -0.068 4.068 7 C -0.200 4.200 8 C 0.306 3.694 9 O -0.438 6.438 10 N -0.345 5.345 11 C -0.038 4.038 12 C -0.157 4.157 13 C -0.163 4.163 14 C 0.030 3.970 15 H 0.076 0.924 16 C 0.031 3.969 17 N -0.397 5.397 18 C -0.373 4.373 19 H 0.063 0.937 20 C -0.252 4.252 21 N -0.632 5.632 22 Si 0.789 3.211 23 H -0.211 1.211 24 H -0.212 1.212 25 H -0.169 1.169 26 C -0.052 4.052 27 C -0.193 4.193 28 C -0.152 4.152 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.128 0.872 36 H 0.061 0.939 37 H 0.117 0.883 38 H 0.091 0.909 39 H 0.133 0.867 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.128 0.872 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.023 0.977 46 H 0.034 0.966 47 H 0.204 0.796 48 H 0.069 0.931 49 H 0.061 0.939 50 H 0.073 0.927 51 H 0.102 0.898 52 H 0.063 0.937 53 H 0.037 0.963 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.927 26.827 17.278 32.150 hybrid contribution -0.772 -1.673 -0.388 1.883 sum 3.155 25.153 16.890 30.462 Atomic orbital electron populations 1.21859 0.95514 1.01107 1.01728 1.22041 0.95344 0.99436 0.93002 0.88421 1.22561 0.95538 0.99454 0.98193 1.22688 0.98508 1.02828 0.90961 1.21378 0.98027 0.88117 0.99248 1.22143 0.95271 1.03643 0.98979 1.21404 0.81233 0.89973 0.76814 1.90991 1.28973 1.80483 1.43325 1.48941 1.18805 1.04966 1.61744 1.22938 0.83454 1.00119 0.97264 1.22818 1.03195 0.91742 0.97935 1.22641 0.94803 0.99222 0.99614 1.21639 0.99492 0.81169 0.94670 0.92400 1.20876 0.97145 0.82980 0.95933 1.42551 1.90745 1.02189 1.04190 1.18943 1.41298 0.90737 0.86307 0.93740 1.25583 1.01904 0.96852 1.00847 1.69899 1.58033 1.07321 1.27952 0.85295 0.77935 0.77915 0.79961 1.21142 1.21205 1.16866 1.21190 0.92890 0.94770 0.96309 1.22001 1.01710 0.98417 0.97166 1.22156 0.96532 0.95478 1.01072 0.91695 0.92734 0.94189 0.93954 0.89019 0.90528 0.87158 0.93854 0.88254 0.90855 0.86724 0.90740 0.89346 0.87239 0.91262 0.89972 0.97651 0.96581 0.79576 0.93052 0.93853 0.92678 0.89803 0.93698 0.96262 0.94533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.01 71.98 0.58 -1.94 16 2 C -0.08 -1.25 2.90 -9.72 -0.03 -1.28 16 3 H 0.10 1.11 7.84 -2.38 -0.02 1.09 16 4 C -0.12 -1.77 6.33 31.88 0.20 -1.57 16 5 C -0.11 -1.49 4.74 31.67 0.15 -1.34 16 6 C -0.06 -1.27 0.61 -52.20 -0.03 -1.30 16 7 C -0.14 -2.24 7.01 71.98 0.50 -1.73 16 8 C 0.51 15.30 6.23 87.66 0.55 15.85 16 9 O -0.56 -22.08 9.33 -3.01 -0.03 -22.11 16 10 N -0.61 -16.55 2.95 -786.95 -2.32 -18.87 16 11 C 0.08 1.41 4.77 86.85 0.41 1.82 16 12 C -0.12 -1.87 7.09 31.98 0.23 -1.64 16 13 C -0.12 -3.24 5.89 31.78 0.19 -3.05 16 14 C 0.13 4.50 3.05 45.25 0.14 4.64 16 15 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 16 C 0.16 7.14 5.60 86.38 0.48 7.63 16 17 N -0.75 -38.46 5.11 -343.46 -1.75 -40.21 16 18 C -0.24 -14.98 10.47 84.03 0.88 -14.10 16 19 H 0.04 3.07 8.06 -2.91 -0.02 3.04 16 20 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 21 N -0.98 -65.45 13.97 21.65 0.30 -65.15 16 22 Si 0.96 47.07 28.02 68.60 1.92 48.99 16 23 H -0.28 -13.92 7.11 99.48 0.71 -13.22 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.24 -10.43 6.13 99.48 0.61 -9.82 16 26 C -0.05 -1.06 0.87 -51.46 -0.04 -1.10 16 27 C -0.14 -2.36 7.21 71.99 0.52 -1.84 16 28 C -0.10 -2.87 5.37 71.98 0.39 -2.48 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.92 7.86 -2.39 -0.02 0.91 16 31 H 0.04 0.88 6.40 -2.39 -0.02 0.86 16 32 H 0.04 0.84 8.06 -2.39 -0.02 0.82 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 1.04 5.53 -2.39 -0.01 1.02 16 35 H 0.11 0.79 7.84 -2.39 -0.02 0.77 16 36 H 0.04 0.87 6.79 -2.39 -0.02 0.85 16 37 H 0.10 0.97 6.68 -2.39 -0.02 0.95 16 38 H 0.07 0.98 5.21 -2.39 -0.01 0.97 16 39 H 0.12 1.25 4.70 -2.39 -0.01 1.24 16 40 H 0.07 1.21 7.34 -2.39 -0.02 1.20 16 41 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.07 2.04 7.85 -2.39 -0.02 2.02 16 44 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.01 0.29 6.75 -2.39 -0.02 0.27 16 46 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.37 17.56 5.13 -92.71 -0.48 17.09 16 48 H 0.26 16.34 8.31 -92.71 -0.77 15.57 16 49 H 0.04 0.88 6.76 -2.39 -0.02 0.87 16 50 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.08 0.98 6.70 -2.39 -0.02 0.96 16 52 H 0.04 1.55 5.79 -12.37 -0.07 1.48 16 53 H 0.02 0.53 6.76 -2.39 -0.02 0.52 16 54 H 0.04 1.35 6.31 -18.05 -0.11 1.23 16 Total: -1.00 -80.33 379.15 3.85 -76.48 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.15 Total: 27.58 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 5.58 Total: -6.71 kcal Atomic # 7 Polarization: -120.46 SS G_CDS: -3.77 Total: -124.23 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.03 Total: -22.11 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.92 Total: 48.99 kcal Total: -80.33 3.85 -76.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715212105.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.581 kcal (2) G-P(sol) polarization free energy of solvation -80.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds