Wall clock time and date at job start Tue Mar 31 2020 15:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47061 * 2 1 4 4 N 1.46494 * 109.46981 * 120.00173 * 2 1 3 5 5 C 1.36939 * 120.00406 * 274.99846 * 4 2 1 6 6 H 1.08004 * 119.99696 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00454 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99929 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00160 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47322 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47050 * 300.00019 * 9 7 5 12 12 H 1.48505 * 109.47103 * 59.99942 * 9 7 5 13 13 C 1.53002 * 109.47039 * 239.99972 * 2 1 3 14 14 H 1.09006 * 109.58026 * 54.57840 * 13 2 1 15 15 C 1.53186 * 109.59044 * 294.15219 * 13 2 1 16 16 C 1.53039 * 109.31226 * 185.57972 * 15 13 2 17 17 C 1.53035 * 109.54204 * 61.36367 * 16 15 13 18 18 C 1.53194 * 109.31280 * 298.63433 * 17 16 15 19 19 N 1.46923 * 109.58577 * 174.85621 * 13 2 1 20 20 C 1.34785 * 120.63076 * 353.38114 * 19 13 2 21 21 O 1.21279 * 119.99796 * 3.99911 * 20 19 13 22 22 C 1.50702 * 119.99541 * 183.99966 * 20 19 13 23 23 H 1.08996 * 109.46979 * 305.46795 * 22 20 19 24 24 C 1.52996 * 109.47096 * 65.47510 * 22 20 19 25 25 C 1.53003 * 109.46968 * 179.97438 * 24 22 20 26 26 C 1.53003 * 109.46735 * 299.99681 * 25 24 22 27 27 H 1.08998 * 109.47373 * 300.00072 * 26 25 24 28 28 C 1.52998 * 109.47218 * 180.02562 * 26 25 24 29 29 C 1.53000 * 109.47506 * 60.00056 * 26 25 24 30 30 C 1.52998 * 109.46970 * 300.00260 * 29 26 25 31 31 H 1.09002 * 109.46497 * 186.71550 * 1 2 3 32 32 H 1.09001 * 109.47102 * 306.71590 * 1 2 3 33 33 H 1.08996 * 109.47013 * 66.71760 * 1 2 3 34 34 H 0.97008 * 120.00162 * 95.00364 * 4 2 1 35 35 H 0.96994 * 119.99809 * 0.02562 * 8 7 5 36 36 H 1.09011 * 109.49504 * 305.52890 * 15 13 2 37 37 H 1.09001 * 109.49895 * 65.61993 * 15 13 2 38 38 H 1.08996 * 109.45698 * 301.33842 * 16 15 13 39 39 H 1.09003 * 109.45427 * 181.38378 * 16 15 13 40 40 H 1.08995 * 109.49737 * 178.68009 * 17 16 15 41 41 H 1.09006 * 109.49918 * 58.58505 * 17 16 15 42 42 H 1.09002 * 109.58343 * 294.85251 * 18 17 16 43 43 H 1.08992 * 109.70414 * 174.48926 * 18 17 16 44 44 H 1.09006 * 109.47162 * 299.99183 * 24 22 20 45 45 H 1.08996 * 109.47790 * 59.99782 * 24 22 20 46 46 H 1.08999 * 109.47516 * 180.02562 * 25 24 22 47 47 H 1.09000 * 109.47355 * 59.99059 * 25 24 22 48 48 H 1.09002 * 109.47251 * 299.99908 * 28 26 25 49 49 H 1.09003 * 109.47562 * 59.99485 * 28 26 25 50 50 H 1.09001 * 109.47462 * 179.97438 * 28 26 25 51 51 H 1.08995 * 109.47510 * 179.97438 * 29 26 25 52 52 H 1.08998 * 109.46792 * 59.99659 * 29 26 25 53 53 H 1.09002 * 109.47251 * 299.99655 * 30 29 26 54 54 H 1.08994 * 109.47413 * 179.97438 * 30 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0076 2.3758 6 1 1.8920 1.0402 2.4244 7 6 2.6123 -0.6618 3.5090 8 7 2.9253 -1.9389 3.4498 9 14 2.7915 0.2702 5.1180 10 1 3.3003 -0.6483 6.1681 11 1 3.7466 1.3926 4.9361 12 1 1.4692 0.8070 5.5289 13 6 2.0401 -0.7213 -1.2493 14 1 1.6006 -0.2679 -2.1378 15 6 1.6545 -2.2022 -1.1807 16 6 2.2853 -2.9446 -2.3610 17 6 3.8096 -2.8380 -2.2772 18 6 4.2196 -1.3641 -2.3583 19 7 3.5040 -0.6162 -1.3155 20 6 4.1779 0.1520 -0.4365 21 8 3.5840 0.7068 0.4637 22 6 5.6692 0.3213 -0.5725 23 1 6.1456 -0.6588 -0.5945 24 6 5.9813 1.0696 -1.8699 25 6 7.4953 1.2421 -2.0076 26 6 8.0278 2.0418 -0.8169 27 1 7.5509 3.0217 -0.7949 28 6 9.5417 2.2149 -0.9548 29 6 7.7156 1.2936 0.4807 30 6 6.2016 1.1211 0.6183 31 1 -0.3632 -1.0207 0.1202 32 1 -0.3633 0.6144 0.8238 33 1 -0.3633 0.4062 -0.9439 34 1 2.2491 -1.6318 1.1525 35 1 2.8327 -2.4227 2.6143 36 1 2.0177 -2.6298 -0.2459 37 1 0.5698 -2.2984 -1.2280 38 1 1.9409 -2.5007 -3.2950 39 1 1.9923 -3.9940 -2.3282 40 1 4.2587 -3.3866 -3.1050 41 1 4.1525 -3.2595 -1.3322 42 1 3.9580 -0.9655 -3.3385 43 1 5.2943 -1.2725 -2.2014 44 1 5.6016 0.5000 -2.7182 45 1 5.5049 2.0497 -1.8479 46 1 7.7177 1.7756 -2.9317 47 1 7.9722 0.2622 -2.0294 48 1 10.0189 1.2352 -0.9769 49 1 9.7638 2.7481 -1.8791 50 1 9.9210 2.7851 -0.1067 51 1 8.0953 1.8632 1.3289 52 1 8.1924 0.3137 0.4587 53 1 5.7247 2.1010 0.6402 54 1 5.9792 0.5877 1.5424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752156182.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:01 Heat of formation + Delta-G solvation = -34.195566 kcal Electronic energy + Delta-G solvation = -30833.302803 eV Core-core repulsion = 27190.684478 eV Total energy + Delta-G solvation = -3642.618325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.78860 -39.61547 -37.97308 -37.02325 -34.50182 -33.84791 -33.10541 -31.66882 -31.04769 -29.59417 -27.98139 -26.01142 -25.52516 -24.73657 -23.59706 -23.01363 -21.72425 -21.37978 -20.59371 -19.66569 -19.21864 -17.61346 -16.96009 -16.51135 -16.49339 -15.86420 -15.71822 -15.43708 -15.26094 -15.23369 -15.09116 -14.65997 -14.58844 -14.29568 -13.98625 -13.81676 -13.65319 -13.34430 -13.24889 -13.07852 -13.02886 -12.96329 -12.71000 -12.58698 -12.33641 -12.09767 -12.07847 -12.00444 -11.88130 -11.83922 -11.66585 -11.53155 -11.49556 -11.35456 -11.17878 -11.01818 -10.90174 -10.77264 -9.58925 -9.30764 -8.67875 -8.16428 -5.00056 1.50162 1.61789 1.77147 2.05204 2.26358 2.78481 3.56052 3.59822 3.70491 3.76874 3.85669 3.87518 3.96783 4.01472 4.16261 4.18928 4.19801 4.28860 4.33665 4.36205 4.42612 4.50036 4.56675 4.59205 4.63840 4.68093 4.76318 4.81554 4.84356 4.89844 4.93048 4.95532 5.00766 5.00993 5.03949 5.11466 5.14320 5.19851 5.22203 5.23306 5.25707 5.33080 5.38162 5.43844 5.45764 5.49333 5.52942 5.60562 5.79180 5.96021 6.68342 6.76328 7.34094 7.71412 8.25895 8.38113 9.36482 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.009406 B = 0.006159 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2976.234483 B = 4544.866077 C = 6645.574215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.173 3.827 3 H 0.053 0.947 4 N -0.714 5.714 5 C -0.238 4.238 6 H 0.039 0.961 7 C -0.128 4.128 8 N -0.994 5.994 9 Si 1.115 2.885 10 H -0.294 1.294 11 H -0.294 1.294 12 H -0.284 1.284 13 C 0.148 3.852 14 H 0.090 0.910 15 C -0.126 4.126 16 C -0.109 4.109 17 C -0.134 4.134 18 C 0.105 3.895 19 N -0.612 5.612 20 C 0.479 3.521 21 O -0.509 6.509 22 C -0.091 4.091 23 H 0.089 0.911 24 C -0.102 4.102 25 C -0.104 4.104 26 C -0.092 4.092 27 H 0.061 0.939 28 C -0.142 4.142 29 C -0.106 4.106 30 C -0.092 4.092 31 H 0.042 0.958 32 H 0.025 0.975 33 H 0.071 0.929 34 H 0.353 0.647 35 H 0.233 0.767 36 H 0.029 0.971 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.036 0.964 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.052 0.948 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.059 0.941 49 H 0.067 0.933 50 H 0.051 0.949 51 H 0.058 0.942 52 H 0.065 0.935 53 H 0.046 0.954 54 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.076 3.072 -21.038 23.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.064 3.936 3 H 0.071 0.929 4 N -0.356 5.356 5 C -0.371 4.371 6 H 0.057 0.943 7 C -0.316 4.316 8 N -0.647 5.647 9 Si 0.944 3.056 10 H -0.221 1.221 11 H -0.222 1.222 12 H -0.211 1.211 13 C 0.044 3.956 14 H 0.108 0.892 15 C -0.165 4.165 16 C -0.147 4.147 17 C -0.172 4.172 18 C -0.017 4.017 19 N -0.348 5.348 20 C 0.267 3.733 21 O -0.382 6.382 22 C -0.113 4.113 23 H 0.107 0.893 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.110 4.110 27 H 0.080 0.920 28 C -0.199 4.199 29 C -0.144 4.144 30 C -0.130 4.130 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.186 0.814 35 H 0.043 0.957 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.055 0.945 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.071 0.929 46 H 0.103 0.897 47 H 0.092 0.908 48 H 0.078 0.922 49 H 0.086 0.914 50 H 0.070 0.930 51 H 0.077 0.923 52 H 0.084 0.916 53 H 0.065 0.935 54 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 9.148 3.541 -18.940 21.329 hybrid contribution -0.767 -0.321 -0.562 1.004 sum 8.381 3.220 -19.502 21.469 Atomic orbital electron populations 1.22421 0.98789 1.00429 1.00297 1.20664 0.90826 0.96575 0.85494 0.92920 1.42456 1.78395 1.08231 1.06535 1.19933 1.34395 0.93337 0.89430 0.94281 1.26566 1.02654 0.97999 1.04377 1.70993 1.57369 1.09346 1.27016 0.82724 0.76312 0.73326 0.73238 1.22055 1.22191 1.21083 1.21483 0.80386 0.95897 0.97787 0.89220 1.21894 1.00907 0.95049 0.98628 1.21476 0.95109 1.00389 0.97698 1.21932 0.96575 0.96465 1.02214 1.22028 0.97472 0.91142 0.91070 1.48021 1.06270 1.47690 1.32825 1.21239 0.90582 0.80288 0.81205 1.90990 1.68693 1.47395 1.31146 1.21234 0.91145 1.00835 0.98072 0.89341 1.21581 0.97915 0.99808 0.94609 1.21574 0.93418 1.01045 0.98116 1.21147 0.96999 0.98682 0.94191 0.92050 1.21784 0.93985 1.02077 1.02045 1.21571 0.93394 1.00947 0.98446 1.21187 0.96683 0.99060 0.96108 0.93889 0.95540 0.91033 0.81357 0.95687 0.95210 0.90763 0.89587 0.91341 0.87796 0.94504 0.89013 0.88775 0.89255 0.92947 0.89663 0.90815 0.92209 0.91420 0.93009 0.92285 0.91587 0.93530 0.95915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.14 9.11 71.98 0.66 -5.49 16 2 C 0.17 7.48 1.88 45.00 0.08 7.56 16 3 H 0.05 2.61 5.94 -5.32 -0.03 2.58 16 4 N -0.71 -38.32 3.58 -322.94 -1.16 -39.48 16 5 C -0.24 -14.66 7.97 84.03 0.67 -13.99 16 6 H 0.04 2.50 7.83 -2.91 -0.02 2.48 16 7 C -0.13 -8.15 5.50 84.86 0.47 -7.68 16 8 N -0.99 -67.28 13.70 21.65 0.30 -66.99 16 9 Si 1.11 59.17 29.92 68.60 2.05 61.22 16 10 H -0.29 -15.70 7.11 99.48 0.71 -15.00 16 11 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 12 H -0.28 -14.08 7.11 99.48 0.71 -13.37 16 13 C 0.15 4.86 2.72 44.97 0.12 4.98 16 14 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 15 C -0.13 -3.87 4.86 30.67 0.15 -3.72 16 16 C -0.11 -2.35 5.88 30.62 0.18 -2.17 16 17 C -0.13 -2.76 6.08 30.67 0.19 -2.58 16 18 C 0.10 2.18 4.93 86.36 0.43 2.61 16 19 N -0.61 -19.17 2.97 -795.01 -2.36 -21.53 16 20 C 0.48 18.44 6.69 87.66 0.59 19.02 16 21 O -0.51 -25.36 8.71 -3.03 -0.03 -25.38 16 22 C -0.09 -2.77 1.68 -11.54 -0.02 -2.79 16 23 H 0.09 2.55 7.23 -2.39 -0.02 2.53 16 24 C -0.10 -2.15 4.83 30.59 0.15 -2.01 16 25 C -0.10 -1.71 5.20 30.60 0.16 -1.56 16 26 C -0.09 -1.79 2.72 -10.79 -0.03 -1.82 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 C -0.14 -2.15 9.19 71.98 0.66 -1.49 16 29 C -0.11 -2.72 5.21 30.59 0.16 -2.56 16 30 C -0.09 -3.21 4.51 30.59 0.14 -3.07 16 31 H 0.04 1.65 7.07 -2.39 -0.02 1.63 16 32 H 0.03 1.11 8.14 -2.39 -0.02 1.10 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.35 19.96 4.49 -92.70 -0.42 19.55 16 35 H 0.23 15.82 6.77 -92.71 -0.63 15.19 16 36 H 0.03 1.18 6.07 -2.38 -0.01 1.16 16 37 H 0.07 2.16 7.05 -2.39 -0.02 2.15 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 40 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 42 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.09 1.76 4.92 -2.39 -0.01 1.74 16 44 H 0.09 1.51 5.76 -2.38 -0.01 1.50 16 45 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 52 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 53 H 0.05 1.76 8.04 -2.39 -0.02 1.74 16 54 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -80.14 386.86 4.11 -76.03 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.56 Total: 32.86 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 4.74 Total: -16.73 kcal Atomic # 7 Polarization: -124.78 SS G_CDS: -3.22 Total: -128.00 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.03 Total: -25.38 kcal Atomic # 14 Polarization: 59.17 SS G_CDS: 2.05 Total: 61.22 kcal Total: -80.14 4.11 -76.03 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752156182.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.834 kcal (2) G-P(sol) polarization free energy of solvation -80.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds