Wall clock time and date at job start Tue Mar 31 2020 15:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47068 * 2 1 4 4 N 1.46503 * 109.47191 * 119.99490 * 2 1 3 5 5 C 1.36941 * 120.00022 * 287.64131 * 4 2 1 6 6 H 1.07990 * 119.99781 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99525 * 179.97438 * 5 4 2 8 8 N 1.31616 * 120.00448 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99687 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46874 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47271 * 119.99917 * 9 7 5 12 12 H 1.48497 * 109.47028 * 240.00092 * 9 7 5 13 13 C 1.52997 * 109.47672 * 239.99800 * 2 1 3 14 14 H 1.08994 * 109.58691 * 288.01258 * 13 2 1 15 15 C 1.53195 * 109.58409 * 48.43822 * 13 2 1 16 16 C 1.53040 * 109.31273 * 174.42293 * 15 13 2 17 17 C 1.53033 * 109.53806 * 298.63375 * 16 15 13 18 18 C 1.52761 * 109.38669 * 61.24047 * 17 16 15 19 19 N 1.46925 * 109.58917 * 167.72515 * 13 2 1 20 20 C 1.34783 * 120.63165 * 6.58231 * 19 13 2 21 21 O 1.21284 * 119.99492 * 5.71462 * 20 19 13 22 22 C 1.50697 * 120.00280 * 185.71735 * 20 19 13 23 23 H 1.08998 * 109.46903 * 39.38296 * 22 20 19 24 24 C 1.52994 * 109.47097 * 159.38519 * 22 20 19 25 25 C 1.53008 * 109.46789 * 179.97438 * 24 22 20 26 26 C 1.53001 * 109.47098 * 300.00115 * 25 24 22 27 27 H 1.09003 * 109.47077 * 300.00198 * 26 25 24 28 28 C 1.53005 * 109.46746 * 180.02562 * 26 25 24 29 29 C 1.52991 * 109.47049 * 60.00242 * 26 25 24 30 30 C 1.53001 * 109.46782 * 279.39010 * 22 20 19 31 31 H 1.09011 * 109.46655 * 177.69241 * 1 2 3 32 32 H 1.08995 * 109.47431 * 297.69543 * 1 2 3 33 33 H 1.09004 * 109.47075 * 57.69885 * 1 2 3 34 34 H 0.97001 * 119.99594 * 107.63968 * 4 2 1 35 35 H 0.97001 * 120.00259 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.49510 * 294.37313 * 15 13 2 37 37 H 1.08994 * 109.50220 * 54.47187 * 15 13 2 38 38 H 1.08999 * 109.45839 * 58.65441 * 16 15 13 39 39 H 1.09003 * 109.45914 * 178.60991 * 16 15 13 40 40 H 1.09008 * 109.50125 * 181.31489 * 17 16 15 41 41 H 1.09000 * 109.49881 * 301.37882 * 17 16 15 42 42 H 1.08997 * 109.51458 * 185.70576 * 18 17 16 43 43 H 1.09000 * 109.43405 * 65.42013 * 18 17 16 44 44 H 1.08997 * 109.47711 * 299.99995 * 24 22 20 45 45 H 1.09001 * 109.47162 * 60.00554 * 24 22 20 46 46 H 1.08993 * 109.46768 * 60.00696 * 25 24 22 47 47 H 1.09005 * 109.46544 * 180.02562 * 25 24 22 48 48 H 1.09005 * 109.46740 * 60.00480 * 28 26 25 49 49 H 1.08997 * 109.46790 * 179.97438 * 28 26 25 50 50 H 1.08990 * 109.47164 * 299.99990 * 28 26 25 51 51 H 1.08998 * 109.47587 * 59.99721 * 29 26 25 52 52 H 1.09007 * 109.47391 * 179.97438 * 29 26 25 53 53 H 1.08998 * 109.46819 * 299.99338 * 30 22 20 54 54 H 1.08997 * 109.47595 * 60.00046 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.9077 -0.0943 2.4241 6 1 1.4601 0.8846 2.5106 7 6 2.3700 -0.7489 3.5576 8 7 2.9150 -1.9423 3.4521 9 14 2.2185 0.0640 5.2326 10 1 1.5738 1.3932 5.0812 11 1 1.3909 -0.7883 6.1234 12 1 3.5698 0.2332 5.8247 13 6 2.0401 -0.7213 -1.2491 14 1 1.8626 -1.7921 -1.1509 15 6 1.3086 -0.1877 -2.4849 16 6 1.9188 -0.8106 -3.7425 17 6 3.3934 -0.4148 -3.8459 18 6 4.1475 -0.9459 -2.6282 19 7 3.4795 -0.4731 -1.4079 20 6 4.1729 0.1808 -0.4549 21 8 3.6341 0.4792 0.5899 22 6 5.6175 0.5413 -0.6876 23 1 5.7498 0.8631 -1.7205 24 6 6.0179 1.6773 0.2558 25 6 7.4849 2.0428 0.0199 26 6 8.3649 0.8208 0.2907 27 1 8.2321 0.4991 1.3237 28 6 9.8318 1.1865 0.0554 29 6 7.9643 -0.3151 -0.6527 30 6 6.4978 -0.6806 -0.4173 31 1 -0.3633 -1.0270 -0.0414 32 1 -0.3634 0.4776 0.9099 33 1 -0.3633 0.5492 -0.8687 34 1 2.4200 -1.5700 1.1185 35 1 3.2377 -2.3998 4.2443 36 1 0.2525 -0.4508 -2.4243 37 1 1.4119 0.8964 -2.5291 38 1 1.8372 -1.8961 -3.6863 39 1 1.3839 -0.4516 -4.6218 40 1 3.8214 -0.8395 -4.7540 41 1 3.4772 0.6715 -3.8778 42 1 5.1742 -0.5804 -2.6477 43 1 4.1451 -2.0358 -2.6471 44 1 5.3908 2.5477 0.0633 45 1 5.8857 1.3554 1.2888 46 1 7.6176 2.3645 -1.0129 47 1 7.7703 2.8518 0.6924 48 1 10.1168 1.9957 0.7279 49 1 10.4587 0.3161 0.2487 50 1 9.9649 1.5084 -0.9773 51 1 8.0970 0.0065 -1.6857 52 1 8.5915 -1.1856 -0.4602 53 1 6.3655 -1.0023 0.6156 54 1 6.2125 -1.4898 -1.0894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752156183.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:05 Heat of formation + Delta-G solvation = -34.941111 kcal Electronic energy + Delta-G solvation = -30564.004798 eV Core-core repulsion = 26921.354144 eV Total energy + Delta-G solvation = -3642.650654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.67168 -39.55747 -37.89925 -36.87642 -34.36063 -33.70398 -33.10612 -31.69257 -31.44737 -29.38642 -27.95404 -26.23455 -25.67458 -24.21294 -23.53421 -23.02597 -21.55985 -21.28473 -20.58308 -19.94736 -18.79351 -17.56553 -16.88044 -16.76136 -16.29360 -15.59039 -15.55427 -15.40233 -15.19732 -15.18013 -14.83182 -14.74295 -14.57456 -14.19678 -14.04629 -13.80247 -13.53771 -13.40228 -13.17009 -13.07530 -13.03791 -12.96510 -12.84350 -12.56697 -12.36801 -12.29904 -12.09393 -12.00109 -11.97010 -11.76909 -11.66233 -11.57794 -11.49574 -11.34276 -11.19930 -11.09326 -10.92700 -10.73736 -9.68052 -9.24750 -8.49885 -7.76807 -4.92350 1.39949 1.41939 1.50336 2.13828 2.29809 2.64430 3.56520 3.62953 3.73536 3.78839 3.88568 3.89975 4.02940 4.16540 4.18783 4.25235 4.28123 4.34271 4.38912 4.43456 4.49568 4.54859 4.59739 4.62523 4.67256 4.76824 4.80786 4.85382 4.88688 4.93283 4.96439 5.00749 5.06540 5.09068 5.10134 5.11169 5.18675 5.21254 5.23390 5.30085 5.31586 5.36448 5.42758 5.44675 5.46450 5.50308 5.57932 5.62357 5.63388 6.01561 6.44503 6.82874 7.50418 7.79452 8.31089 8.53483 9.48967 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.008400 B = 0.006432 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3332.366922 B = 4352.109166 C = 7002.763831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.182 3.818 3 H 0.029 0.971 4 N -0.691 5.691 5 C -0.161 4.161 6 H 0.052 0.948 7 C -0.093 4.093 8 N -0.979 5.979 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.296 1.296 12 H -0.305 1.305 13 C 0.150 3.850 14 H 0.049 0.951 15 C -0.119 4.119 16 C -0.115 4.115 17 C -0.128 4.128 18 C 0.102 3.898 19 N -0.615 5.615 20 C 0.465 3.535 21 O -0.498 6.498 22 C -0.088 4.088 23 H 0.114 0.886 24 C -0.097 4.097 25 C -0.101 4.101 26 C -0.099 4.099 27 H 0.040 0.960 28 C -0.139 4.139 29 C -0.100 4.100 30 C -0.103 4.103 31 H 0.044 0.956 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.362 0.638 35 H 0.239 0.761 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.099 0.901 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.027 0.973 46 H 0.086 0.914 47 H 0.061 0.939 48 H 0.052 0.948 49 H 0.057 0.943 50 H 0.071 0.929 51 H 0.090 0.910 52 H 0.069 0.931 53 H 0.023 0.977 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.065 4.660 -21.796 24.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.074 3.926 3 H 0.046 0.954 4 N -0.329 5.329 5 C -0.294 4.294 6 H 0.070 0.930 7 C -0.283 4.283 8 N -0.634 5.634 9 Si 0.785 3.215 10 H -0.200 1.200 11 H -0.224 1.224 12 H -0.233 1.233 13 C 0.046 3.954 14 H 0.067 0.933 15 C -0.158 4.158 16 C -0.152 4.152 17 C -0.166 4.166 18 C -0.020 4.020 19 N -0.351 5.351 20 C 0.251 3.749 21 O -0.369 6.369 22 C -0.109 4.109 23 H 0.132 0.868 24 C -0.135 4.135 25 C -0.138 4.138 26 C -0.117 4.117 27 H 0.059 0.941 28 C -0.196 4.196 29 C -0.137 4.137 30 C -0.141 4.141 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.193 0.807 35 H 0.047 0.953 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.083 0.917 42 H 0.117 0.883 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.046 0.954 46 H 0.104 0.896 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.090 0.910 51 H 0.108 0.892 52 H 0.087 0.913 53 H 0.042 0.958 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.718 5.010 -21.089 23.363 hybrid contribution -0.189 -0.199 2.018 2.036 sum 8.528 4.810 -19.071 21.438 Atomic orbital electron populations 1.22412 0.98100 1.00787 1.00494 1.20444 0.91311 0.95288 0.85553 0.95371 1.42292 1.70423 1.18241 1.01943 1.19213 1.26515 0.98090 0.85600 0.92956 1.25152 1.04719 0.98226 1.00191 1.69802 1.50704 1.15547 1.27385 0.85304 0.76249 0.77744 0.82186 1.20022 1.22401 1.23309 1.21316 0.80805 0.98038 0.95217 0.93321 1.21946 0.99856 1.00542 0.93453 1.21513 0.96048 1.00703 0.96973 1.21834 0.95491 1.01550 0.97684 1.21876 0.97554 0.99177 0.83413 1.48076 1.08342 1.58305 1.20421 1.21385 0.89716 0.80077 0.83686 1.91248 1.69464 1.50892 1.25306 1.21255 0.90695 0.97110 1.01832 0.86814 1.21275 0.97374 0.96797 0.98071 1.21541 0.92199 0.97374 1.02719 1.21176 0.96134 0.95648 0.98777 0.94130 1.21763 0.93955 1.01405 1.02481 1.21531 0.93507 0.98120 1.00583 1.21431 0.96044 0.96203 1.00419 0.93677 0.95254 0.90661 0.80719 0.95255 0.89973 0.92022 0.91793 0.89819 0.88249 0.91711 0.88274 0.91816 0.92997 0.95428 0.89587 0.92001 0.92845 0.92412 0.91047 0.89157 0.91267 0.95795 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.04 8.57 71.98 0.62 -5.42 16 2 C 0.18 7.88 1.83 44.99 0.08 7.96 16 3 H 0.03 1.38 6.45 -2.38 -0.02 1.36 16 4 N -0.69 -37.91 3.10 -322.94 -1.00 -38.91 16 5 C -0.16 -9.87 8.24 84.03 0.69 -9.18 16 6 H 0.05 3.25 7.83 -2.92 -0.02 3.22 16 7 C -0.09 -5.94 5.50 84.86 0.47 -5.47 16 8 N -0.98 -65.53 13.06 21.65 0.28 -65.25 16 9 Si 0.95 51.98 29.55 68.60 2.03 54.01 16 10 H -0.28 -14.35 7.11 99.48 0.71 -13.65 16 11 H -0.30 -15.90 7.11 99.48 0.71 -15.19 16 12 H -0.30 -16.82 7.11 99.48 0.71 -16.11 16 13 C 0.15 5.04 2.60 44.97 0.12 5.16 16 14 H 0.05 1.77 8.12 -2.39 -0.02 1.75 16 15 C -0.12 -2.85 4.44 30.67 0.14 -2.72 16 16 C -0.11 -1.97 5.89 30.62 0.18 -1.78 16 17 C -0.13 -1.95 6.06 30.53 0.19 -1.77 16 18 C 0.10 2.10 5.57 86.22 0.48 2.58 16 19 N -0.61 -19.27 2.98 -795.85 -2.37 -21.64 16 20 C 0.46 17.70 6.58 87.66 0.58 18.28 16 21 O -0.50 -25.08 9.05 -3.04 -0.03 -25.11 16 22 C -0.09 -2.54 1.66 -11.54 -0.02 -2.56 16 23 H 0.11 2.46 6.78 -2.39 -0.02 2.44 16 24 C -0.10 -3.08 4.68 30.60 0.14 -2.93 16 25 C -0.10 -2.30 5.20 30.60 0.16 -2.14 16 26 C -0.10 -2.19 2.72 -10.79 -0.03 -2.22 16 27 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 28 C -0.14 -2.28 9.19 71.98 0.66 -1.62 16 29 C -0.10 -2.03 5.20 30.58 0.16 -1.87 16 30 C -0.10 -2.86 4.92 30.58 0.15 -2.71 16 31 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.03 1.24 7.90 -2.39 -0.02 1.22 16 33 H 0.07 2.26 6.60 -2.38 -0.02 2.25 16 34 H 0.36 21.68 7.69 -92.71 -0.71 20.97 16 35 H 0.24 15.64 8.31 -92.71 -0.77 14.87 16 36 H 0.08 1.84 6.75 -2.38 -0.02 1.82 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.10 1.69 4.91 -2.39 -0.01 1.68 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.03 1.13 7.89 -2.39 -0.02 1.11 16 46 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 48 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 49 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 53 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 54 H 0.07 1.87 6.81 -2.39 -0.02 1.85 16 Total: -1.00 -79.14 392.38 3.81 -75.33 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.14 Total: 29.99 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 4.76 Total: -8.42 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -3.09 Total: -125.80 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.03 Total: -25.11 kcal Atomic # 14 Polarization: 51.98 SS G_CDS: 2.03 Total: 54.01 kcal Total: -79.14 3.81 -75.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752156183.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.393 kcal (2) G-P(sol) polarization free energy of solvation -79.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds