Wall clock time and date at job start Tue Mar 31 2020 15:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46780 * 2 1 4 4 N 1.46492 * 109.47348 * 240.00057 * 2 1 3 5 5 C 1.36938 * 120.00480 * 74.27470 * 4 2 1 6 6 H 1.08002 * 119.99525 * 0.27985 * 5 4 2 7 7 C 1.38815 * 120.00619 * 180.27534 * 5 4 2 8 8 N 1.31620 * 119.99456 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00344 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47054 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46789 * 119.99913 * 9 7 5 12 12 H 1.48500 * 109.47345 * 240.00065 * 9 7 5 13 13 C 1.52997 * 109.46731 * 119.99645 * 2 1 3 14 14 H 1.08993 * 109.58793 * 72.07518 * 13 2 1 15 15 C 1.53192 * 109.59045 * 311.78256 * 13 2 1 16 16 C 1.53069 * 109.29354 * 185.72020 * 15 13 2 17 17 C 1.53041 * 109.66034 * 61.16088 * 16 15 13 18 18 C 1.53193 * 109.30905 * 298.69843 * 17 16 15 19 19 N 1.46926 * 108.77941 * 54.63422 * 18 17 16 20 20 C 1.34768 * 120.63439 * 126.41536 * 19 18 17 21 21 O 1.21277 * 120.00525 * 175.46322 * 20 19 18 22 22 C 1.50704 * 119.99850 * 355.45697 * 20 19 18 23 23 H 1.09002 * 109.47172 * 48.47883 * 22 20 19 24 24 C 1.53002 * 109.47192 * 168.47526 * 22 20 19 25 25 C 1.52994 * 109.47266 * 180.02562 * 24 22 20 26 26 C 1.52994 * 109.47400 * 300.00365 * 25 24 22 27 27 H 1.09002 * 109.46917 * 300.00104 * 26 25 24 28 28 C 1.53004 * 109.47481 * 179.97438 * 26 25 24 29 29 C 1.53002 * 109.47209 * 59.99600 * 26 25 24 30 30 C 1.52993 * 109.47094 * 300.00133 * 29 26 25 31 31 H 1.09004 * 109.46511 * 186.10647 * 1 2 3 32 32 H 1.08991 * 109.47701 * 306.11053 * 1 2 3 33 33 H 1.09002 * 109.46747 * 66.11635 * 1 2 3 34 34 H 0.97004 * 119.99947 * 254.55281 * 4 2 1 35 35 H 0.97005 * 120.00009 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.49787 * 305.53717 * 15 13 2 37 37 H 1.09000 * 109.49295 * 65.62972 * 15 13 2 38 38 H 1.08994 * 109.35245 * 301.13153 * 16 15 13 39 39 H 1.09006 * 109.44020 * 181.23741 * 16 15 13 40 40 H 1.08997 * 109.49804 * 178.74535 * 17 16 15 41 41 H 1.08999 * 109.52547 * 58.65993 * 17 16 15 42 42 H 1.08999 * 109.58624 * 294.84519 * 18 17 16 43 43 H 1.09004 * 109.58779 * 174.42261 * 18 17 16 44 44 H 1.09000 * 109.47203 * 300.00374 * 24 22 20 45 45 H 1.09002 * 109.46770 * 60.00112 * 24 22 20 46 46 H 1.09002 * 109.47170 * 60.00313 * 25 24 22 47 47 H 1.09000 * 109.47700 * 179.97438 * 25 24 22 48 48 H 1.09000 * 109.47043 * 59.99577 * 28 26 25 49 49 H 1.08995 * 109.46935 * 179.97438 * 28 26 25 50 50 H 1.08997 * 109.46619 * 299.99687 * 28 26 25 51 51 H 1.09001 * 109.47281 * 60.00527 * 29 26 25 52 52 H 1.09005 * 109.46835 * 180.02562 * 29 26 25 53 53 H 1.09002 * 109.47541 * 299.99808 * 30 29 26 54 54 H 1.09005 * 109.46987 * 179.97438 * 30 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 1.9437 -0.0784 -2.4187 6 1 1.5288 0.9154 -2.5005 7 6 2.4012 -0.7350 -3.5530 8 7 2.9064 -1.9463 -3.4533 9 14 2.2999 0.1004 -5.2206 10 1 1.6969 1.4484 -5.0632 11 1 3.6643 0.2327 -5.7916 12 1 1.4585 -0.7153 -6.1327 13 6 2.0399 -0.7212 1.2493 14 1 1.8637 -1.7922 1.1504 15 6 1.3045 -0.1915 2.4843 16 6 1.9170 -0.8117 3.7425 17 6 3.3912 -0.4143 3.8471 18 6 4.1478 -0.9490 2.6271 19 7 3.4791 -0.4715 1.4091 20 6 4.1724 0.1827 0.4565 21 8 3.6283 0.4994 -0.5801 22 6 5.6240 0.5209 0.6793 23 1 6.1528 -0.3637 1.0344 24 6 6.2457 0.9926 -0.6368 25 6 7.7195 1.3353 -0.4107 26 6 7.8301 2.4482 0.6333 27 1 7.3016 3.3330 0.2784 28 6 9.3040 2.7905 0.8598 29 6 7.2084 1.9765 1.9493 30 6 5.7346 1.6339 1.7233 31 1 -0.3632 -1.0219 0.1093 32 1 -0.3634 0.6056 0.8301 33 1 -0.3633 0.4161 -0.9397 34 1 2.3910 -1.5831 -1.1226 35 1 3.2265 -2.4050 -4.2458 36 1 1.4043 0.8930 2.5299 37 1 0.2494 -0.4578 2.4214 38 1 1.8367 -1.8972 3.6858 39 1 1.3811 -0.4534 4.6215 40 1 3.8189 -0.8389 4.7553 41 1 3.4742 0.6721 3.8792 42 1 4.1432 -2.0389 2.6431 43 1 5.1753 -0.5856 2.6462 44 1 6.1674 0.1995 -1.3804 45 1 5.7169 1.8771 -0.9919 46 1 8.2480 0.4505 -0.0558 47 1 8.1626 1.6709 -1.3484 48 1 9.7473 3.1263 -0.0776 49 1 9.3826 3.5837 1.6032 50 1 9.8320 1.9055 1.2149 51 1 7.7369 1.0917 2.3043 52 1 7.2868 2.7697 2.6930 53 1 5.2061 2.5187 1.3684 54 1 5.2918 1.2975 2.6608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752156184.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:09 Heat of formation + Delta-G solvation = -34.737289 kcal Electronic energy + Delta-G solvation = -30591.012151 eV Core-core repulsion = 26948.370336 eV Total energy + Delta-G solvation = -3642.641815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.69186 -39.52693 -37.91282 -36.87301 -34.37284 -33.68475 -33.10168 -31.71118 -31.39483 -29.37717 -27.94838 -26.21948 -25.67394 -24.20078 -23.59107 -22.90498 -21.53099 -21.34713 -20.69726 -19.83327 -18.74615 -17.61060 -16.96968 -16.73240 -16.06379 -15.84454 -15.49487 -15.47345 -15.18998 -15.12034 -14.96206 -14.72061 -14.42280 -14.16652 -13.98741 -13.70611 -13.60258 -13.49285 -13.15855 -13.04900 -12.99974 -12.95002 -12.83198 -12.54853 -12.37541 -12.29248 -12.10105 -12.01370 -11.90545 -11.80721 -11.66531 -11.57959 -11.48413 -11.34537 -11.20319 -11.07957 -10.87991 -10.75857 -9.65164 -9.25690 -8.51015 -7.76732 -4.92682 1.40277 1.42275 1.50690 2.15165 2.29643 2.64818 3.56758 3.62159 3.74281 3.80510 3.88715 3.90727 4.04233 4.17055 4.19743 4.21957 4.31036 4.34436 4.40148 4.42486 4.48987 4.54975 4.59600 4.66527 4.67110 4.76273 4.79887 4.86025 4.89353 4.94831 4.96984 5.02452 5.06363 5.08359 5.10174 5.15330 5.20050 5.21596 5.25544 5.29683 5.30923 5.36947 5.43516 5.45729 5.47069 5.52967 5.58264 5.62058 5.63888 6.02053 6.44984 6.83018 7.50617 7.79477 8.30810 8.53399 9.49233 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.009059 B = 0.006072 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3090.242266 B = 4610.220889 C = 7146.437866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.182 3.818 3 H 0.031 0.969 4 N -0.693 5.693 5 C -0.158 4.158 6 H 0.052 0.948 7 C -0.093 4.093 8 N -0.980 5.980 9 Si 0.952 3.048 10 H -0.276 1.276 11 H -0.304 1.304 12 H -0.296 1.296 13 C 0.150 3.850 14 H 0.048 0.952 15 C -0.119 4.119 16 C -0.115 4.115 17 C -0.126 4.126 18 C 0.100 3.900 19 N -0.614 5.614 20 C 0.466 3.534 21 O -0.498 6.498 22 C -0.091 4.091 23 H 0.096 0.904 24 C -0.093 4.093 25 C -0.105 4.105 26 C -0.093 4.093 27 H 0.056 0.944 28 C -0.141 4.141 29 C -0.103 4.103 30 C -0.099 4.099 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.028 0.972 34 H 0.361 0.639 35 H 0.239 0.761 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.099 0.901 44 H 0.025 0.975 45 H 0.040 0.960 46 H 0.071 0.929 47 H 0.056 0.944 48 H 0.050 0.950 49 H 0.065 0.935 50 H 0.062 0.938 51 H 0.078 0.922 52 H 0.082 0.918 53 H 0.045 0.955 54 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.432 6.083 22.583 24.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.074 3.926 3 H 0.049 0.951 4 N -0.331 5.331 5 C -0.291 4.291 6 H 0.070 0.930 7 C -0.282 4.282 8 N -0.636 5.636 9 Si 0.785 3.215 10 H -0.201 1.201 11 H -0.232 1.232 12 H -0.224 1.224 13 C 0.046 3.954 14 H 0.066 0.934 15 C -0.157 4.157 16 C -0.152 4.152 17 C -0.164 4.164 18 C -0.022 4.022 19 N -0.350 5.350 20 C 0.253 3.747 21 O -0.369 6.369 22 C -0.112 4.112 23 H 0.114 0.886 24 C -0.131 4.131 25 C -0.142 4.142 26 C -0.112 4.112 27 H 0.074 0.926 28 C -0.198 4.198 29 C -0.140 4.140 30 C -0.137 4.137 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.193 0.807 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.117 0.883 44 H 0.044 0.956 45 H 0.059 0.941 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.084 0.916 50 H 0.081 0.919 51 H 0.096 0.904 52 H 0.100 0.900 53 H 0.064 0.936 54 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.093 6.450 21.885 24.208 hybrid contribution -0.108 -0.242 -2.029 2.047 sum 7.985 6.208 19.855 22.283 Atomic orbital electron populations 1.22418 0.98214 1.00818 1.00387 1.20456 0.91209 0.95439 0.85487 0.95089 1.42302 1.71983 1.16343 1.02458 1.19196 1.27324 0.96862 0.85754 0.93035 1.25137 1.04988 0.97933 1.00182 1.69802 1.51981 1.14338 1.27484 0.85309 0.76267 0.77771 0.82163 1.20098 1.23242 1.22404 1.21330 0.80786 0.98013 0.95258 0.93367 1.21940 0.99782 1.00570 0.93450 1.21515 0.96049 1.00686 0.96971 1.21905 0.95401 1.01589 0.97534 1.21988 0.97606 0.99061 0.83557 1.48037 1.08343 1.58109 1.20537 1.21341 0.89913 0.80053 0.83439 1.91225 1.69525 1.50392 1.25790 1.21247 0.91757 1.00608 0.97604 0.88601 1.21198 0.96627 0.99649 0.95676 1.21563 0.93976 0.99418 0.99288 1.21151 0.97261 0.97257 0.95490 0.92552 1.21780 0.94392 1.01962 1.01706 1.21566 0.93536 1.02222 0.96694 1.21512 0.98427 0.96241 0.97515 0.93546 0.90863 0.95287 0.80748 0.95208 0.92040 0.90018 0.91857 0.89800 0.88263 0.91484 0.91953 0.88273 0.95563 0.94129 0.90983 0.92533 0.93131 0.91588 0.91898 0.90356 0.89963 0.93600 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.04 8.47 71.98 0.61 -5.43 16 2 C 0.18 7.87 1.83 44.99 0.08 7.95 16 3 H 0.03 1.51 6.41 -2.39 -0.02 1.50 16 4 N -0.69 -37.95 3.18 -322.95 -1.03 -38.98 16 5 C -0.16 -9.69 8.14 84.03 0.68 -9.00 16 6 H 0.05 3.20 7.83 -2.91 -0.02 3.18 16 7 C -0.09 -5.90 5.50 84.86 0.47 -5.43 16 8 N -0.98 -65.49 13.06 21.65 0.28 -65.21 16 9 Si 0.95 51.90 29.55 68.60 2.03 53.93 16 10 H -0.28 -14.40 7.11 99.48 0.71 -13.70 16 11 H -0.30 -16.73 7.11 99.48 0.71 -16.02 16 12 H -0.30 -15.88 7.11 99.48 0.71 -15.18 16 13 C 0.15 5.03 2.61 44.97 0.12 5.14 16 14 H 0.05 1.75 8.11 -2.39 -0.02 1.73 16 15 C -0.12 -2.83 4.46 30.68 0.14 -2.69 16 16 C -0.11 -1.95 5.88 30.63 0.18 -1.77 16 17 C -0.13 -1.90 5.98 30.67 0.18 -1.72 16 18 C 0.10 2.07 5.56 86.36 0.48 2.55 16 19 N -0.61 -19.22 2.97 -795.03 -2.36 -21.59 16 20 C 0.47 17.79 6.68 87.66 0.59 18.38 16 21 O -0.50 -25.03 8.90 -3.02 -0.03 -25.05 16 22 C -0.09 -2.66 1.66 -11.54 -0.02 -2.68 16 23 H 0.10 2.48 7.10 -2.39 -0.02 2.46 16 24 C -0.09 -3.20 4.57 30.59 0.14 -3.07 16 25 C -0.10 -2.61 5.20 30.59 0.16 -2.46 16 26 C -0.09 -1.83 2.72 -10.79 -0.03 -1.86 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 C -0.14 -2.13 9.19 71.98 0.66 -1.47 16 29 C -0.10 -1.69 5.20 30.59 0.16 -1.53 16 30 C -0.10 -2.15 4.85 30.59 0.15 -2.00 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 2.22 6.85 -2.39 -0.02 2.20 16 33 H 0.03 1.23 7.87 -2.39 -0.02 1.21 16 34 H 0.36 21.60 7.70 -92.70 -0.71 20.89 16 35 H 0.24 15.62 8.31 -92.70 -0.77 14.85 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.83 6.83 -2.39 -0.02 1.81 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 1.03 7.72 -2.39 -0.02 1.01 16 42 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.10 1.72 4.63 -2.38 -0.01 1.71 16 44 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.04 1.59 7.97 -2.39 -0.02 1.57 16 46 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 53 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 54 H 0.09 1.53 5.76 -2.38 -0.01 1.52 16 Total: -1.00 -78.45 390.86 3.77 -74.68 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.14 Total: 29.30 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 4.75 Total: -7.08 kcal Atomic # 7 Polarization: -122.66 SS G_CDS: -3.11 Total: -125.77 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.03 Total: -25.05 kcal Atomic # 14 Polarization: 51.90 SS G_CDS: 2.03 Total: 53.93 kcal Total: -78.45 3.77 -74.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752156184.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.939 kcal (2) G-P(sol) polarization free energy of solvation -78.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds