Wall clock time and date at job start Tue Mar 31 2020 13:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47605 * 2 1 4 4 N 1.46495 * 109.47196 * 180.02562 * 3 2 1 5 5 C 1.34780 * 119.99919 * 269.99647 * 4 3 2 6 6 O 1.21278 * 119.99847 * 180.02562 * 5 4 3 7 7 C 1.50705 * 119.99752 * 0.02562 * 5 4 3 8 8 C 1.50704 * 109.46586 * 179.97438 * 7 5 4 9 9 C 1.50699 * 119.99812 * 274.99700 * 8 7 5 10 10 C 1.31001 * 119.99869 * 95.00165 * 8 7 5 11 11 C 1.50704 * 120.00096 * 355.04049 * 10 8 7 12 12 C 1.50699 * 120.00021 * 175.03455 * 10 8 7 13 13 C 1.46501 * 120.00217 * 90.00263 * 4 3 2 14 14 C 1.53346 * 109.41807 * 240.12415 * 13 4 3 15 15 C 1.53189 * 109.15099 * 178.67036 * 14 13 4 16 16 N 1.46930 * 108.89206 * 54.57923 * 15 14 13 17 17 C 1.36933 * 120.63046 * 126.29651 * 16 15 14 18 18 H 1.08000 * 120.00233 * 324.33056 * 17 16 15 19 19 C 1.38813 * 119.99777 * 144.33140 * 17 16 15 20 20 N 1.31623 * 120.00244 * 342.25013 * 19 17 16 21 21 Si 1.86808 * 120.00023 * 162.25435 * 19 17 16 22 22 H 1.48496 * 109.46999 * 89.99594 * 21 19 17 23 23 H 1.48503 * 109.46779 * 210.00146 * 21 19 17 24 24 H 1.48497 * 109.46644 * 329.99579 * 21 19 17 25 25 C 1.46925 * 118.73845 * 306.32147 * 16 15 14 26 26 C 1.53040 * 109.45942 * 119.99630 * 13 4 3 27 27 H 1.09002 * 109.47614 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47434 * 300.00328 * 1 2 3 29 29 H 1.09007 * 109.47479 * 60.00051 * 1 2 3 30 30 H 1.09003 * 109.47434 * 239.99672 * 2 1 3 31 31 H 1.09002 * 109.47021 * 120.00520 * 2 1 3 32 32 H 1.09003 * 109.46993 * 59.99401 * 3 2 1 33 33 H 1.09007 * 109.46660 * 300.00451 * 3 2 1 34 34 H 1.08994 * 109.47160 * 299.99662 * 7 5 4 35 35 H 1.08998 * 109.46900 * 60.00198 * 7 5 4 36 36 H 1.09005 * 109.46739 * 94.57858 * 9 8 7 37 37 H 1.09004 * 109.47089 * 214.56900 * 9 8 7 38 38 H 1.08997 * 109.47491 * 334.57207 * 9 8 7 39 39 H 1.08994 * 109.46947 * 89.99901 * 11 10 8 40 40 H 1.08997 * 109.46763 * 209.99935 * 11 10 8 41 41 H 1.09004 * 109.46548 * 329.99691 * 11 10 8 42 42 H 1.09007 * 109.46879 * 54.53427 * 12 10 8 43 43 H 1.08998 * 109.47234 * 174.53088 * 12 10 8 44 44 H 1.08996 * 109.47565 * 294.53845 * 12 10 8 45 45 H 1.09002 * 109.45632 * 0.02642 * 13 4 3 46 46 H 1.09010 * 109.68472 * 58.70922 * 14 13 4 47 47 H 1.08996 * 109.47450 * 298.51137 * 14 13 4 48 48 H 1.08996 * 109.58815 * 294.72267 * 15 14 13 49 49 H 1.08994 * 109.58783 * 174.43438 * 15 14 13 50 50 H 0.96996 * 119.99820 * 179.97438 * 20 19 17 51 51 H 1.09005 * 109.59048 * 173.39151 * 25 16 15 52 52 H 1.09001 * 109.58854 * 293.68093 * 25 16 15 53 53 H 1.08999 * 109.49912 * 61.43701 * 26 13 4 54 54 H 1.09002 * 109.52475 * 301.35083 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.1794 1.4422 1.1663 6 8 5.3921 1.4426 1.1658 7 6 3.4263 1.4415 2.4718 8 6 4.4062 1.4409 3.6168 9 6 4.9823 0.1404 4.1146 10 6 4.7569 2.5707 4.1793 11 6 4.2690 3.8786 3.6115 12 6 5.6483 2.5626 5.3944 13 6 4.2370 1.4425 -1.2696 14 6 5.1157 0.1884 -1.3515 15 6 5.8527 0.1780 -2.6944 16 7 6.5868 1.4419 -2.8441 17 6 7.9284 1.4413 -3.1183 18 1 8.5663 0.6811 -2.6922 19 6 8.4685 2.4179 -3.9438 20 7 7.6836 3.1198 -4.7336 21 14 10.3093 2.7357 -3.9340 22 1 10.9666 1.8692 -4.9450 23 1 10.5671 4.1612 -4.2609 24 1 10.8572 2.4296 -2.5882 25 6 5.8541 2.7065 -2.6934 26 6 5.1167 2.6922 -1.3506 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 2.7995 2.3313 2.5300 35 1 2.8000 0.5513 2.5294 36 1 5.9401 -0.0427 3.6275 37 1 5.1284 0.1970 5.1934 38 1 4.2954 -0.6736 3.8833 39 1 3.3235 4.1486 4.0817 40 1 5.0068 4.6569 3.8060 41 1 4.1238 3.7761 2.5360 42 1 6.5569 2.0018 5.1748 43 1 5.9091 3.5870 5.6606 44 1 5.1239 2.0932 6.2267 45 1 3.5281 1.4432 -2.0977 46 1 4.4925 -0.7024 -1.2716 47 1 5.8413 0.1995 -0.5383 48 1 5.1322 0.0757 -3.5059 49 1 6.5532 -0.6566 -2.7203 50 1 8.0611 3.8024 -5.3102 51 1 6.5558 3.5404 -2.7159 52 1 5.1354 2.8116 -3.5061 53 1 5.8423 2.6796 -0.5372 54 1 4.4933 3.5825 -1.2683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752439961.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:41 Heat of formation + Delta-G solvation = -38.138860 kcal Electronic energy + Delta-G solvation = -29496.352964 eV Core-core repulsion = 25853.563645 eV Total energy + Delta-G solvation = -3642.789319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.44487 -39.04644 -37.83157 -37.03366 -34.92007 -33.42446 -32.27391 -31.66907 -31.28026 -30.23627 -27.70973 -27.25362 -26.33681 -24.88287 -23.88940 -23.66708 -22.58675 -21.19727 -19.93022 -18.82162 -17.98573 -17.53196 -17.08498 -16.76312 -16.58498 -15.70620 -15.53069 -15.44580 -15.30496 -15.27256 -15.10893 -14.79761 -14.40784 -14.36994 -14.11095 -13.91872 -13.59090 -13.34222 -13.16277 -13.07052 -13.02530 -12.99925 -12.90823 -12.74533 -12.65897 -12.62940 -12.54794 -12.28554 -12.14786 -12.12029 -12.04884 -11.81475 -11.64740 -11.51891 -11.39110 -11.20087 -10.61547 -10.44231 -9.49252 -9.31426 -8.61155 -7.91751 -5.43460 1.18425 1.40910 1.42986 1.53853 1.80253 2.18228 2.47422 3.22242 3.64876 3.68391 3.80513 3.98109 4.02984 4.05731 4.13287 4.19890 4.24822 4.35421 4.40796 4.48019 4.51939 4.56256 4.62681 4.65155 4.67245 4.72674 4.74559 4.79904 4.80284 4.86468 4.87392 4.95745 5.01179 5.01593 5.05595 5.07426 5.10050 5.13579 5.16672 5.22411 5.27130 5.31069 5.38569 5.44348 5.50855 5.62401 5.63964 5.78527 5.82288 6.12682 6.39600 6.62412 7.12698 7.41153 7.81120 8.37848 9.13362 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011168 B = 0.004044 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.667728 B = 6922.072198 C = 8521.722926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.102 3.898 4 N -0.610 5.610 5 C 0.507 3.493 6 O -0.565 6.565 7 C -0.095 4.095 8 C -0.133 4.133 9 C -0.108 4.108 10 C -0.138 4.138 11 C -0.115 4.115 12 C -0.112 4.112 13 C 0.171 3.829 14 C -0.128 4.128 15 C 0.148 3.852 16 N -0.606 5.606 17 C -0.274 4.274 18 H 0.051 0.949 19 C -0.036 4.036 20 N -0.926 5.926 21 Si 0.962 3.038 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.190 3.810 26 C -0.136 4.136 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.071 0.929 47 H 0.052 0.948 48 H 0.022 0.978 49 H 0.046 0.954 50 H 0.252 0.748 51 H 0.033 0.967 52 H 0.008 0.992 53 H 0.050 0.950 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.178 -3.284 18.381 26.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C -0.020 4.020 4 N -0.342 5.342 5 C 0.297 3.703 6 O -0.444 6.444 7 C -0.134 4.134 8 C -0.134 4.134 9 C -0.165 4.165 10 C -0.138 4.138 11 C -0.172 4.172 12 C -0.168 4.168 13 C 0.068 3.932 14 C -0.168 4.168 15 C 0.022 3.978 16 N -0.330 5.330 17 C -0.404 4.404 18 H 0.068 0.932 19 C -0.233 4.233 20 N -0.570 5.570 21 Si 0.789 3.211 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.203 1.203 25 C 0.064 3.936 26 C -0.176 4.176 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.104 0.896 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.107 0.893 46 H 0.090 0.910 47 H 0.070 0.930 48 H 0.039 0.961 49 H 0.065 0.935 50 H 0.061 0.939 51 H 0.052 0.948 52 H 0.026 0.974 53 H 0.069 0.931 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.511 -3.161 18.256 25.493 hybrid contribution 1.409 0.306 -0.715 1.609 sum -16.102 -2.854 17.542 23.982 Atomic orbital electron populations 1.21673 0.93480 1.02396 1.02707 1.21930 0.97325 0.96323 1.02186 1.21969 0.77344 0.97964 1.04676 1.48326 1.07652 1.73238 1.05017 1.21197 0.87837 0.75310 0.85999 1.90714 1.16094 1.49873 1.87670 1.20871 0.97696 1.06030 0.88796 1.21006 0.99747 0.95647 0.96966 1.20737 0.99966 0.94604 1.01180 1.21640 0.99174 0.94659 0.98343 1.20852 1.01959 0.94679 0.99703 1.20799 0.98106 1.02591 0.95342 1.20785 0.92862 0.94301 0.85291 1.22243 0.98844 0.97158 0.98566 1.20969 0.94077 0.88517 0.94255 1.44139 1.05584 1.00819 1.82432 1.19294 0.84581 1.13876 1.22660 0.93182 1.25894 1.01778 1.00546 0.95115 1.70168 1.35947 1.25756 1.25162 0.85390 0.80758 0.77080 0.77901 1.20319 1.21246 1.20268 1.20386 0.92920 0.88382 0.91903 1.22317 0.98833 0.97240 0.99176 0.92254 0.91230 0.92314 0.92869 0.91828 0.88152 0.89633 0.86718 0.86572 0.93726 0.90406 0.91523 0.89441 0.92061 0.93683 0.92788 0.91638 0.89952 0.89309 0.91020 0.92965 0.96052 0.93512 0.93887 0.94825 0.97429 0.93143 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.91 71.98 0.71 -0.80 16 2 C -0.14 -2.07 6.26 30.59 0.19 -1.88 16 3 C 0.10 1.73 5.18 86.38 0.45 2.18 16 4 N -0.61 -16.35 2.42 -797.10 -1.93 -18.29 16 5 C 0.51 15.02 6.66 87.66 0.58 15.61 16 6 O -0.57 -22.92 12.28 -3.02 -0.04 -22.95 16 7 C -0.09 -1.92 3.71 29.10 0.11 -1.82 16 8 C -0.13 -3.04 4.54 -16.49 -0.07 -3.11 16 9 C -0.11 -2.32 9.35 71.24 0.67 -1.66 16 10 C -0.14 -3.05 6.05 -16.49 -0.10 -3.15 16 11 C -0.12 -2.35 8.98 71.24 0.64 -1.71 16 12 C -0.11 -2.08 8.69 71.24 0.62 -1.46 16 13 C 0.17 5.91 2.51 45.12 0.11 6.02 16 14 C -0.13 -4.95 5.30 30.77 0.16 -4.78 16 15 C 0.15 6.74 6.50 86.36 0.56 7.30 16 16 N -0.61 -33.14 2.94 -699.09 -2.06 -35.19 16 17 C -0.27 -16.41 9.48 84.03 0.80 -15.61 16 18 H 0.05 3.02 7.89 -2.91 -0.02 3.00 16 19 C -0.04 -2.16 4.84 84.86 0.41 -1.75 16 20 N -0.93 -56.96 11.85 21.65 0.26 -56.71 16 21 Si 0.96 47.43 29.59 68.60 2.03 49.46 16 22 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 24 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 25 C 0.19 9.80 5.29 86.37 0.46 10.26 16 26 C -0.14 -5.72 5.27 30.67 0.16 -5.56 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.95 7.22 -2.39 -0.02 0.93 16 32 H 0.10 1.20 6.44 -2.39 -0.02 1.19 16 33 H 0.09 1.37 7.92 -2.38 -0.02 1.35 16 34 H 0.11 1.84 5.76 -2.39 -0.01 1.83 16 35 H 0.12 1.79 7.11 -2.39 -0.02 1.78 16 36 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.08 1.35 6.76 -2.38 -0.02 1.34 16 38 H 0.07 1.23 8.04 -2.39 -0.02 1.21 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.06 1.25 8.01 -2.39 -0.02 1.23 16 41 H 0.04 1.07 6.35 -2.38 -0.02 1.05 16 42 H 0.05 1.13 7.80 -2.38 -0.02 1.11 16 43 H 0.06 1.10 7.91 -2.39 -0.02 1.08 16 44 H 0.08 1.20 7.80 -2.39 -0.02 1.18 16 45 H 0.09 2.84 7.79 -2.39 -0.02 2.82 16 46 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 47 H 0.05 2.36 6.22 -2.39 -0.01 2.35 16 48 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.05 2.15 7.93 -2.39 -0.02 2.13 16 50 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 51 H 0.03 1.95 6.68 -2.38 -0.02 1.93 16 52 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 53 H 0.05 2.45 6.21 -2.39 -0.01 2.44 16 54 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -74.60 408.53 5.56 -69.04 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.84 Total: 16.56 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 6.46 Total: -1.92 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -3.73 Total: -110.19 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.04 Total: -22.95 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -74.60 5.56 -69.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752439961.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.904 kcal (2) G-P(sol) polarization free energy of solvation -74.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds