Wall clock time and date at job start Tue Mar 31 2020 13:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47710 * 2 1 4 4 N 1.46499 * 109.47472 * 180.02562 * 3 2 1 5 5 C 1.36935 * 119.99823 * 180.02562 * 4 3 2 6 6 H 1.08004 * 120.00355 * 359.97438 * 5 4 3 7 7 C 1.38809 * 120.00075 * 179.97438 * 5 4 3 8 8 N 1.31614 * 120.00510 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99825 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.47392 * 89.99849 * 9 7 5 11 11 H 1.48505 * 109.47130 * 209.99967 * 9 7 5 12 12 H 1.48504 * 109.47095 * 329.99404 * 9 7 5 13 13 N 1.46503 * 109.47177 * 120.00641 * 2 1 3 14 14 C 1.34783 * 119.99569 * 304.28647 * 13 2 1 15 15 O 1.21276 * 119.99906 * 354.99535 * 14 13 2 16 16 C 1.50702 * 119.99751 * 174.99376 * 14 13 2 17 17 C 1.52997 * 109.46957 * 180.02562 * 16 14 13 18 18 C 1.54067 * 108.87588 * 297.97499 * 17 16 14 19 19 C 1.54069 * 112.81403 * 197.50497 * 18 17 16 20 20 C 1.50476 * 112.49996 * 318.28340 * 19 18 17 21 21 C 1.54240 * 108.51683 * 94.15200 * 20 19 18 22 22 C 1.45537 * 112.41052 * 280.01013 * 21 20 19 23 23 C 1.50469 * 108.87592 * 174.99711 * 17 16 14 24 24 C 1.53006 * 109.47013 * 239.99885 * 2 1 3 25 25 C 1.53002 * 117.49544 * 12.69223 * 24 2 1 26 26 C 1.52995 * 60.00041 * 252.51045 * 25 24 2 27 27 H 1.09006 * 109.46560 * 299.99738 * 1 2 3 28 28 H 1.08992 * 109.47563 * 59.99586 * 1 2 3 29 29 H 1.08996 * 109.47258 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46802 * 300.00994 * 3 2 1 31 31 H 1.09005 * 109.46941 * 59.99916 * 3 2 1 32 32 H 0.96995 * 120.00000 * 359.97438 * 4 3 2 33 33 H 0.97000 * 120.00589 * 180.02562 * 8 7 5 34 34 H 0.97000 * 120.00656 * 124.29560 * 13 2 1 35 35 H 1.09000 * 109.47308 * 60.00259 * 16 14 13 36 36 H 1.09006 * 109.46866 * 300.00205 * 16 14 13 37 37 H 1.08996 * 108.77042 * 56.48703 * 17 16 14 38 38 H 1.08992 * 108.81387 * 318.36596 * 18 17 16 39 39 H 1.08999 * 108.81628 * 76.75804 * 18 17 16 40 40 H 1.09000 * 108.87656 * 197.50698 * 19 18 17 41 41 H 1.08994 * 108.87858 * 79.06622 * 19 18 17 42 42 H 1.08994 * 109.63154 * 334.44422 * 20 19 18 43 43 H 1.08998 * 109.62694 * 213.85992 * 20 19 18 44 44 H 1.08996 * 108.89654 * 40.76841 * 21 20 19 45 45 H 1.09004 * 108.89212 * 159.35327 * 21 20 19 46 46 H 1.08999 * 108.89987 * 182.69307 * 22 21 20 47 47 H 1.09006 * 108.89633 * 301.18967 * 22 21 20 48 48 H 1.09006 * 109.62653 * 95.21775 * 23 17 16 49 49 H 1.08994 * 109.63244 * 334.63957 * 23 17 16 50 50 H 1.08994 * 115.55329 * 158.40233 * 24 2 1 51 51 H 1.08998 * 117.49996 * 0.02562 * 25 24 2 52 52 H 1.09000 * 117.49693 * 145.01562 * 25 24 2 53 53 H 1.09002 * 117.49907 * 252.50991 * 26 25 24 54 54 H 1.09003 * 117.49955 * 107.49058 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1898 2.6282 -0.0002 6 1 3.6498 3.5636 0.0002 7 6 5.5779 2.6282 -0.0002 8 7 6.2360 3.7680 0.0007 9 14 6.5118 1.0104 -0.0016 10 1 6.7593 0.5828 -1.4019 11 1 7.8095 1.1874 0.6985 12 1 5.7093 -0.0250 0.6978 13 7 2.0183 -0.6908 1.1961 14 6 1.6230 -0.2829 2.4184 15 8 0.9366 0.7103 2.5336 16 6 2.0338 -1.0611 3.6418 17 6 1.4567 -0.3907 4.8902 18 6 2.0409 1.0300 5.0082 19 6 1.8764 1.6283 6.4184 20 6 0.5242 1.3398 7.0122 21 6 0.6303 0.0667 7.8764 22 6 0.5904 -1.1501 7.0790 23 6 1.7700 -1.2436 6.0896 24 6 2.0400 -0.7213 -1.2493 25 6 1.0271 -1.0167 -2.3573 26 6 1.5585 -2.1546 -1.4835 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.9900 0.6023 -0.0006 33 1 7.2060 3.7680 0.0003 34 1 2.6263 -1.4415 1.1085 35 1 3.1214 -1.0826 3.7105 36 1 1.6541 -2.0802 3.5686 37 1 0.3746 -0.3192 4.7813 38 1 3.1022 0.9952 4.7627 39 1 1.5360 1.6783 4.2920 40 1 2.0134 2.7082 6.3615 41 1 2.6441 1.2113 7.0701 42 1 -0.2001 1.1808 6.2135 43 1 0.2105 2.1788 7.6333 44 1 1.5678 0.0941 8.4318 45 1 -0.1985 0.0505 8.5843 46 1 0.6208 -2.0111 7.7468 47 1 -0.3437 -1.1739 6.5177 48 1 2.6795 -0.8813 6.5689 49 1 1.9049 -2.2791 5.7774 50 1 3.0587 -0.4771 -1.5502 51 1 -0.0024 -0.6969 -2.1965 52 1 1.3794 -0.9666 -3.3876 53 1 2.2605 -2.8532 -1.9389 54 1 0.8786 -2.5837 -0.7475 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753524750.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:04 Heat of formation + Delta-G solvation = -39.368372 kcal Electronic energy + Delta-G solvation = -29539.002952 eV Core-core repulsion = 25896.160318 eV Total energy + Delta-G solvation = -3642.842634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.51978 -40.05245 -38.72528 -36.52589 -34.98960 -34.51698 -33.35807 -33.10022 -31.55422 -28.80107 -27.79137 -25.74774 -25.26533 -24.11939 -23.77891 -23.12989 -21.45138 -21.15468 -20.34656 -19.92866 -19.60089 -18.21277 -17.02149 -16.67744 -16.58565 -16.40326 -16.34845 -15.74084 -15.41315 -15.37554 -14.91564 -14.80449 -14.68167 -14.29972 -13.99094 -13.87263 -13.80961 -13.58815 -13.36032 -13.26053 -13.09731 -12.86595 -12.72940 -12.59368 -12.29173 -12.24213 -12.04586 -11.99470 -11.84965 -11.67425 -11.49135 -11.42602 -11.24847 -11.16667 -11.11677 -11.09299 -11.00179 -10.94380 -10.27197 -9.86619 -9.27226 -8.04669 -5.37171 1.29658 1.36766 1.43932 1.85943 2.25057 2.45116 3.03463 3.26002 3.54541 3.70915 3.73504 3.74743 3.85503 3.90348 4.01135 4.14052 4.18305 4.19496 4.23942 4.38344 4.38699 4.50002 4.53566 4.56670 4.65362 4.75302 4.77780 4.79738 4.84578 4.88723 4.90686 4.91557 4.97818 5.03073 5.10406 5.17157 5.21181 5.24409 5.28454 5.32547 5.35865 5.37166 5.39333 5.42636 5.49222 5.50835 5.62122 5.69420 5.71365 5.77994 6.18379 6.77385 7.05765 7.49989 7.80461 8.04907 9.17793 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.010372 B = 0.004429 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.983196 B = 6320.046745 C = 7919.836316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.209 3.791 3 C 0.151 3.849 4 N -0.742 5.742 5 C -0.233 4.233 6 H 0.042 0.958 7 C -0.065 4.065 8 N -0.987 5.987 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.295 1.295 12 H -0.248 1.248 13 N -0.713 5.713 14 C 0.507 3.493 15 O -0.564 6.564 16 C -0.136 4.136 17 C -0.057 4.057 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.115 4.115 21 C -0.114 4.114 22 C -0.115 4.115 23 C -0.110 4.110 24 C -0.182 4.182 25 C -0.167 4.167 26 C -0.150 4.150 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.018 0.982 31 H 0.020 0.980 32 H 0.367 0.633 33 H 0.258 0.742 34 H 0.407 0.593 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.045 0.955 40 H 0.040 0.960 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.056 0.944 48 H 0.062 0.938 49 H 0.083 0.917 50 H 0.090 0.910 51 H 0.110 0.890 52 H 0.099 0.901 53 H 0.107 0.893 54 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.331 -20.301 9.582 26.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.123 3.877 3 C 0.024 3.976 4 N -0.388 5.388 5 C -0.364 4.364 6 H 0.061 0.939 7 C -0.256 4.256 8 N -0.638 5.638 9 Si 0.785 3.215 10 H -0.200 1.200 11 H -0.222 1.222 12 H -0.172 1.172 13 N -0.365 5.365 14 C 0.295 3.705 15 O -0.443 6.443 16 C -0.176 4.176 17 C -0.076 4.076 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.153 4.153 21 C -0.151 4.151 22 C -0.152 4.152 23 C -0.147 4.147 24 C -0.201 4.201 25 C -0.204 4.204 26 C -0.187 4.187 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.036 0.964 31 H 0.038 0.962 32 H 0.201 0.799 33 H 0.066 0.934 34 H 0.243 0.757 35 H 0.112 0.888 36 H 0.142 0.858 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.102 0.898 50 H 0.108 0.892 51 H 0.128 0.872 52 H 0.117 0.883 53 H 0.126 0.874 54 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.836 -19.379 9.664 25.697 hybrid contribution 1.489 0.228 -0.413 1.562 sum -12.347 -19.151 9.251 24.592 Atomic orbital electron populations 1.22161 0.92922 1.03027 1.02943 1.19800 0.94351 0.89774 0.83778 1.21063 0.83018 0.95898 0.97670 1.42422 1.02103 1.03541 1.90717 1.18991 0.89894 0.86254 1.41296 0.93946 1.25536 0.96955 1.00560 1.02567 1.69905 1.07101 1.26898 1.59861 0.85359 0.77806 0.80006 0.78340 1.19965 1.22207 1.17219 1.46024 1.49791 1.35641 1.05027 1.21230 0.79225 0.84708 0.85300 1.90606 1.40225 1.26845 1.86576 1.22021 1.03248 1.00906 0.91384 1.20616 1.00029 0.93428 0.93502 1.22014 0.99168 0.97153 0.96910 1.21303 0.98407 0.99414 0.95994 1.21316 0.96581 0.98346 0.99038 1.20476 1.02313 0.94252 0.98104 1.20461 0.98248 0.98212 0.98324 1.21430 0.98725 0.99786 0.94799 1.22313 0.99899 1.00576 0.97306 1.23177 0.99059 1.02601 0.95574 1.23036 1.03312 0.89697 1.02627 0.92317 0.90967 0.90262 0.96427 0.96151 0.79923 0.93354 0.75726 0.88761 0.85767 0.91715 0.94727 0.93589 0.94088 0.91575 0.92705 0.91859 0.91968 0.91516 0.90777 0.92490 0.91878 0.89831 0.89228 0.87228 0.88277 0.87445 0.87313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 6.98 71.98 0.50 -3.54 16 2 C 0.21 6.35 0.54 3.60 0.00 6.36 16 3 C 0.15 6.49 5.03 86.38 0.43 6.93 16 4 N -0.74 -36.49 4.84 -343.45 -1.66 -38.16 16 5 C -0.23 -14.20 10.47 84.03 0.88 -13.32 16 6 H 0.04 2.90 8.06 -2.91 -0.02 2.88 16 7 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 8 N -0.99 -65.65 13.97 21.65 0.30 -65.35 16 9 Si 0.96 46.02 27.74 68.60 1.90 47.93 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 12 H -0.25 -10.46 6.52 99.48 0.65 -9.81 16 13 N -0.71 -19.51 4.73 -422.91 -2.00 -21.51 16 14 C 0.51 15.13 6.96 87.66 0.61 15.74 16 15 O -0.56 -21.29 10.08 -3.02 -0.03 -21.32 16 16 C -0.14 -2.92 4.91 29.85 0.15 -2.77 16 17 C -0.06 -1.29 1.39 -11.25 -0.02 -1.31 16 18 C -0.11 -3.42 4.65 31.32 0.15 -3.28 16 19 C -0.11 -2.87 5.31 30.14 0.16 -2.71 16 20 C -0.12 -2.44 5.61 30.20 0.17 -2.27 16 21 C -0.11 -1.86 5.26 28.74 0.15 -1.70 16 22 C -0.12 -1.73 5.26 28.74 0.15 -1.58 16 23 C -0.11 -1.83 5.13 30.20 0.15 -1.67 16 24 C -0.18 -4.76 4.85 -10.79 -0.05 -4.81 16 25 C -0.17 -3.41 9.63 30.59 0.29 -3.12 16 26 C -0.15 -2.63 9.82 30.59 0.30 -2.33 16 27 H 0.06 1.87 6.04 -2.38 -0.01 1.85 16 28 H 0.07 1.80 6.78 -2.39 -0.02 1.78 16 29 H 0.08 1.66 6.99 -2.39 -0.02 1.65 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.02 1.02 6.32 -2.38 -0.02 1.00 16 32 H 0.37 16.62 4.48 -92.71 -0.42 16.21 16 33 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 34 H 0.41 8.98 8.48 -92.71 -0.79 8.19 16 35 H 0.09 1.99 8.07 -2.39 -0.02 1.97 16 36 H 0.12 1.75 7.96 -2.38 -0.02 1.73 16 37 H 0.06 1.62 6.48 -2.39 -0.02 1.60 16 38 H 0.03 1.12 7.93 -2.39 -0.02 1.11 16 39 H 0.05 1.73 6.15 -2.39 -0.01 1.72 16 40 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.07 1.50 6.63 -2.39 -0.02 1.48 16 42 H 0.05 1.30 6.98 -2.39 -0.02 1.28 16 43 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.06 0.98 7.47 -2.39 -0.02 0.96 16 45 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 46 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.06 0.91 7.47 -2.38 -0.02 0.89 16 48 H 0.06 1.12 6.98 -2.38 -0.02 1.10 16 49 H 0.08 1.06 7.59 -2.39 -0.02 1.04 16 50 H 0.09 2.83 7.08 -2.39 -0.02 2.81 16 51 H 0.11 2.06 5.88 -2.39 -0.01 2.05 16 52 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 53 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 54 H 0.11 1.62 7.35 -2.39 -0.02 1.60 16 Total: -1.00 -76.60 391.85 2.64 -73.96 By element: Atomic # 1 Polarization: 43.74 SS G_CDS: -0.37 Total: 43.37 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 4.50 Total: -18.92 kcal Atomic # 7 Polarization: -121.65 SS G_CDS: -3.36 Total: -125.01 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.03 Total: -21.32 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.90 Total: 47.93 kcal Total: -76.60 2.64 -73.96 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753524750.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.590 kcal (2) G-P(sol) polarization free energy of solvation -76.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds