Wall clock time and date at job start Tue Mar 31 2020 13:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47163 * 2 1 4 4 N 1.46499 * 109.46906 * 300.00302 * 3 2 1 5 5 C 1.36942 * 119.99734 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00179 * 359.97438 * 5 4 3 7 7 C 1.38811 * 120.00223 * 180.02562 * 5 4 3 8 8 N 1.31619 * 119.99887 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00247 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47022 * 59.99806 * 9 7 5 11 11 H 1.48502 * 109.46911 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46780 * 299.99708 * 9 7 5 13 13 N 1.46505 * 109.46786 * 240.00268 * 2 1 3 14 14 C 1.34775 * 119.99903 * 174.05928 * 13 2 1 15 15 O 1.21283 * 119.99770 * 355.56468 * 14 13 2 16 16 C 1.50692 * 120.00146 * 175.57182 * 14 13 2 17 17 C 1.53002 * 109.47218 * 179.97438 * 16 14 13 18 18 C 1.54062 * 108.87647 * 297.97153 * 17 16 14 19 19 C 1.54061 * 112.82032 * 197.50366 * 18 17 16 20 20 C 1.50479 * 112.50003 * 318.28706 * 19 18 17 21 21 C 1.54244 * 108.51785 * 94.14688 * 20 19 18 22 22 C 1.45542 * 112.40886 * 280.01476 * 21 20 19 23 23 C 1.50476 * 108.87454 * 174.99578 * 17 16 14 24 24 C 1.53001 * 109.47006 * 120.00353 * 2 1 3 25 25 C 1.52997 * 117.49719 * 122.16001 * 24 2 1 26 26 C 1.52995 * 117.50033 * 53.49799 * 24 2 1 27 27 H 1.09002 * 109.47137 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46834 * 299.99764 * 1 2 3 29 29 H 1.08996 * 109.47092 * 59.99525 * 1 2 3 30 30 H 1.09002 * 109.46777 * 59.99929 * 3 2 1 31 31 H 1.08994 * 109.47112 * 180.02562 * 3 2 1 32 32 H 0.96994 * 120.00289 * 0.02562 * 4 3 2 33 33 H 0.96999 * 120.00520 * 180.02562 * 8 7 5 34 34 H 0.97000 * 120.00305 * 354.05489 * 13 2 1 35 35 H 1.08999 * 109.47317 * 59.99635 * 16 14 13 36 36 H 1.09005 * 109.46966 * 299.99429 * 16 14 13 37 37 H 1.09000 * 108.85269 * 56.43997 * 17 16 14 38 38 H 1.09001 * 108.81473 * 318.36877 * 18 17 16 39 39 H 1.09007 * 108.81201 * 76.75704 * 18 17 16 40 40 H 1.08995 * 108.88512 * 197.50824 * 19 18 17 41 41 H 1.09000 * 108.87875 * 79.06049 * 19 18 17 42 42 H 1.09000 * 109.62848 * 334.44246 * 20 19 18 43 43 H 1.08994 * 109.62801 * 213.85730 * 20 19 18 44 44 H 1.09003 * 108.89527 * 40.77067 * 21 20 19 45 45 H 1.08997 * 108.89706 * 159.35434 * 21 20 19 46 46 H 1.08997 * 108.89463 * 182.69311 * 22 21 20 47 47 H 1.09005 * 108.89162 * 301.18029 * 22 21 20 48 48 H 1.09004 * 109.62831 * 95.22108 * 23 17 16 49 49 H 1.08999 * 109.79101 * 334.73192 * 23 17 16 50 50 H 1.09002 * 115.54816 * 267.82515 * 24 2 1 51 51 H 1.09007 * 117.50327 * 359.97438 * 25 24 2 52 52 H 1.09001 * 117.50119 * 145.01497 * 25 24 2 53 53 H 1.09006 * 117.50119 * 214.97619 * 26 24 2 54 54 H 1.09000 * 117.50264 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5517 2.1331 -1.1961 5 6 1.8820 3.4443 -1.4126 6 1 2.5023 3.9694 -0.7013 7 6 1.4189 4.0989 -2.5456 8 7 0.6626 3.4591 -3.4123 9 14 1.8702 5.8873 -2.8412 10 1 3.3468 6.0170 -2.9304 11 1 1.2555 6.3494 -4.1116 12 1 1.3674 6.7169 -1.7169 13 7 2.0183 -0.6906 -1.1963 14 6 3.3375 -0.7102 -1.4718 15 8 4.1118 -0.0892 -0.7748 16 6 3.8503 -1.5034 -2.6459 17 6 5.3707 -1.3572 -2.7353 18 6 5.7157 0.1255 -2.9723 19 6 7.1493 0.3287 -3.4985 20 6 8.1490 -0.5545 -2.8021 21 6 8.3316 -1.8396 -3.6354 22 6 7.2608 -2.8004 -3.4155 23 6 5.8819 -2.2499 -3.8334 24 6 2.0400 -0.7213 1.2492 25 6 2.9566 -1.9289 1.0429 26 6 1.5144 -2.1336 1.5135 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 0.9937 1.6618 -1.8344 33 1 0.3392 3.9163 -4.2042 34 1 1.3923 -1.1338 -1.7900 35 1 3.3952 -1.1301 -3.5633 36 1 3.5932 -2.5545 -2.5144 37 1 5.8112 -1.6736 -1.7898 38 1 5.0135 0.5384 -3.6965 39 1 5.6083 0.6660 -2.0317 40 1 7.4353 1.3699 -3.3503 41 1 7.1677 0.1085 -4.5659 42 1 7.7810 -0.8115 -1.8088 43 1 9.1026 -0.0334 -2.7189 44 1 8.3563 -1.5743 -4.6924 45 1 9.2807 -2.3031 -3.3661 46 1 7.4708 -3.7012 -3.9921 47 1 7.2313 -3.0599 -2.3572 48 1 5.9807 -1.6767 -4.7553 49 1 5.1893 -3.0771 -3.9891 50 1 2.2319 -0.0857 2.1137 51 1 3.1959 -2.2098 0.0172 52 1 3.7512 -2.0880 1.7719 53 1 1.3608 -2.4274 2.5520 54 1 0.8049 -2.5488 0.7977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753524751.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:08 Heat of formation + Delta-G solvation = -34.482317 kcal Electronic energy + Delta-G solvation = -29881.072764 eV Core-core repulsion = 26238.442005 eV Total energy + Delta-G solvation = -3642.630759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.63529 -39.95493 -38.22641 -36.56129 -34.83205 -34.46666 -33.18472 -33.02267 -31.25132 -28.79145 -27.60958 -25.74396 -25.52821 -24.36390 -23.08902 -22.88944 -21.64124 -21.37284 -20.25860 -19.86442 -19.23024 -17.89313 -17.26178 -16.91029 -16.51346 -16.29465 -15.84134 -15.66725 -15.42850 -15.20029 -14.94450 -14.80825 -14.60087 -14.30234 -13.88393 -13.67574 -13.56745 -13.50564 -13.21835 -13.08206 -12.98737 -12.79217 -12.73610 -12.54837 -12.34398 -12.24887 -12.14353 -11.98159 -11.76877 -11.64965 -11.48231 -11.42302 -11.19374 -11.13541 -11.09541 -10.99354 -10.97636 -10.88971 -10.12435 -9.77276 -8.87922 -7.94501 -5.19003 1.42095 1.44922 1.50854 1.97283 2.41429 2.54811 2.99417 3.38663 3.69440 3.73390 3.76281 3.90607 3.95904 4.03675 4.10835 4.18082 4.21875 4.25127 4.39190 4.39838 4.41764 4.52939 4.55196 4.57220 4.61292 4.74801 4.78788 4.83817 4.90321 4.91082 4.93562 4.95976 4.99206 5.11174 5.17826 5.22158 5.24625 5.25795 5.32970 5.35832 5.36810 5.37789 5.38890 5.41339 5.47023 5.51225 5.51809 5.63646 5.71778 5.88374 6.28801 6.85294 7.35824 7.61948 8.12627 8.40897 9.28452 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.008944 B = 0.005047 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.687288 B = 5546.978787 C = 7883.585994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.209 3.791 3 C 0.140 3.860 4 N -0.726 5.726 5 C -0.239 4.239 6 H 0.058 0.942 7 C -0.068 4.068 8 N -0.963 5.963 9 Si 0.964 3.036 10 H -0.287 1.287 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.715 5.715 14 C 0.513 3.487 15 O -0.555 6.555 16 C -0.138 4.138 17 C -0.053 4.053 18 C -0.111 4.111 19 C -0.113 4.113 20 C -0.114 4.114 21 C -0.114 4.114 22 C -0.114 4.114 23 C -0.110 4.110 24 C -0.164 4.164 25 C -0.166 4.166 26 C -0.150 4.150 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.006 0.994 31 H 0.034 0.966 32 H 0.377 0.623 33 H 0.250 0.750 34 H 0.405 0.595 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.065 0.935 38 H 0.028 0.972 39 H 0.045 0.955 40 H 0.039 0.961 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.057 0.943 48 H 0.061 0.939 49 H 0.082 0.918 50 H 0.095 0.905 51 H 0.090 0.910 52 H 0.085 0.915 53 H 0.106 0.894 54 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.712 -19.481 2.132 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.122 3.878 3 C 0.013 3.987 4 N -0.370 5.370 5 C -0.371 4.371 6 H 0.076 0.924 7 C -0.260 4.260 8 N -0.614 5.614 9 Si 0.793 3.207 10 H -0.214 1.214 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.367 5.367 14 C 0.301 3.699 15 O -0.433 6.433 16 C -0.177 4.177 17 C -0.072 4.072 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.152 4.152 21 C -0.151 4.151 22 C -0.152 4.152 23 C -0.148 4.148 24 C -0.184 4.184 25 C -0.204 4.204 26 C -0.187 4.187 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.024 0.976 31 H 0.052 0.948 32 H 0.210 0.790 33 H 0.059 0.941 34 H 0.241 0.759 35 H 0.107 0.893 36 H 0.139 0.861 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.101 0.899 50 H 0.113 0.887 51 H 0.108 0.892 52 H 0.103 0.897 53 H 0.124 0.876 54 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.340 -18.882 2.681 20.815 hybrid contribution -0.390 1.599 -0.618 1.758 sum 7.950 -17.283 2.063 19.135 Atomic orbital electron populations 1.21907 0.92214 1.03030 1.02491 1.19780 0.94213 0.89727 0.84036 1.21221 0.97892 0.91057 0.88555 1.42266 1.60917 1.09589 1.24192 1.19453 1.24336 0.89207 1.04103 0.92374 1.25348 1.01351 1.01872 0.97474 1.69763 1.40918 1.37337 1.13427 0.85355 0.77367 0.80983 0.76950 1.21383 1.21519 1.20519 1.46001 1.07784 1.56251 1.26638 1.20943 0.82148 0.80780 0.85987 1.90607 1.56697 1.43971 1.52050 1.22024 0.97633 1.01698 0.96390 1.20577 0.92686 0.94308 0.99651 1.21970 0.95898 0.96955 1.00057 1.21299 0.94417 0.99009 1.00325 1.21312 0.98215 0.96509 0.99149 1.20477 0.99233 0.95436 0.99966 1.20456 0.94287 0.98742 1.01688 1.21428 0.97183 0.98673 0.97487 1.22411 1.06390 0.91288 0.98332 1.22913 0.93810 1.01578 1.02059 1.23046 0.96287 0.96497 1.02877 0.89408 0.91347 0.93505 0.97614 0.94817 0.79007 0.94076 0.75942 0.89283 0.86132 0.91694 0.95265 0.93639 0.94162 0.91682 0.92717 0.91777 0.91998 0.91376 0.90716 0.92446 0.92055 0.89948 0.88686 0.89199 0.89678 0.87583 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 8.18 71.98 0.59 -3.46 16 2 C 0.21 6.83 0.55 3.60 0.00 6.83 16 3 C 0.14 6.28 4.81 86.38 0.42 6.69 16 4 N -0.73 -38.39 5.18 -343.46 -1.78 -40.16 16 5 C -0.24 -14.20 9.99 84.03 0.84 -13.36 16 6 H 0.06 3.47 7.83 -2.91 -0.02 3.45 16 7 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 8 N -0.96 -59.33 13.06 21.65 0.28 -59.05 16 9 Si 0.96 48.33 29.55 68.60 2.03 50.35 16 10 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 11 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 12 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 13 N -0.71 -21.31 4.17 -422.91 -1.76 -23.07 16 14 C 0.51 16.57 4.58 87.65 0.40 16.98 16 15 O -0.56 -22.23 10.18 -3.04 -0.03 -22.26 16 16 C -0.14 -3.38 4.91 29.85 0.15 -3.23 16 17 C -0.05 -1.34 1.39 -11.25 -0.02 -1.36 16 18 C -0.11 -3.61 4.65 31.31 0.15 -3.47 16 19 C -0.11 -3.07 5.31 30.14 0.16 -2.91 16 20 C -0.11 -2.58 5.61 30.20 0.17 -2.41 16 21 C -0.11 -2.00 5.26 28.74 0.15 -1.85 16 22 C -0.11 -1.89 5.26 28.74 0.15 -1.74 16 23 C -0.11 -2.07 5.13 30.20 0.15 -1.92 16 24 C -0.16 -4.65 4.89 -10.80 -0.05 -4.70 16 25 C -0.17 -4.20 8.62 30.62 0.26 -3.94 16 26 C -0.15 -3.07 9.68 30.62 0.30 -2.77 16 27 H 0.09 1.90 6.91 -2.39 -0.02 1.88 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.05 1.62 6.86 -2.39 -0.02 1.60 16 30 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.03 1.72 5.63 -2.39 -0.01 1.70 16 32 H 0.38 20.30 6.35 -92.71 -0.59 19.72 16 33 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.41 9.99 8.48 -92.71 -0.79 9.21 16 35 H 0.09 2.25 8.07 -2.39 -0.02 2.23 16 36 H 0.12 2.06 7.96 -2.38 -0.02 2.04 16 37 H 0.06 1.76 6.47 -2.39 -0.02 1.74 16 38 H 0.03 1.06 7.93 -2.39 -0.02 1.04 16 39 H 0.04 1.84 6.16 -2.38 -0.01 1.83 16 40 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 1.60 6.63 -2.39 -0.02 1.59 16 42 H 0.05 1.38 6.97 -2.39 -0.02 1.36 16 43 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.06 1.05 7.47 -2.39 -0.02 1.04 16 45 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.06 0.99 7.47 -2.38 -0.02 0.98 16 48 H 0.06 1.23 6.98 -2.39 -0.02 1.21 16 49 H 0.08 1.23 7.60 -2.39 -0.02 1.21 16 50 H 0.09 2.86 8.06 -2.39 -0.02 2.84 16 51 H 0.09 2.32 5.21 -2.38 -0.01 2.31 16 52 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 53 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 54 H 0.11 1.87 7.20 -2.39 -0.02 1.85 16 Total: -1.00 -71.21 393.48 2.53 -68.67 By element: Atomic # 1 Polarization: 46.19 SS G_CDS: -0.49 Total: 45.70 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 4.29 Total: -20.18 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -3.26 Total: -122.29 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.03 Total: -22.26 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.35 kcal Total: -71.21 2.53 -68.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753524751.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.191 kcal (2) G-P(sol) polarization free energy of solvation -71.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds