Wall clock time and date at job start Tue Mar 31 2020 15:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47480 * 2 1 4 4 C 1.52993 * 109.47195 * 239.99501 * 2 1 3 5 5 C 1.52999 * 109.47446 * 300.00287 * 4 2 1 6 6 C 1.52998 * 109.47232 * 300.00123 * 5 4 2 7 7 C 1.53002 * 109.47053 * 59.99758 * 6 5 4 8 8 C 1.52998 * 109.46695 * 119.99860 * 2 1 3 9 9 C 1.53002 * 109.47053 * 299.99908 * 8 2 1 10 10 N 1.46502 * 109.47190 * 185.52529 * 9 8 2 11 11 C 1.36934 * 120.00486 * 175.04018 * 10 9 8 12 12 H 1.08003 * 119.99605 * 359.97438 * 11 10 9 13 13 C 1.38813 * 120.00593 * 179.97438 * 11 10 9 14 14 N 1.31621 * 119.99433 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00053 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47138 * 89.99971 * 15 13 11 17 17 H 1.48499 * 109.47034 * 209.99945 * 15 13 11 18 18 H 1.48497 * 109.47536 * 329.99952 * 15 13 11 19 19 N 1.46501 * 109.47131 * 180.02562 * 8 2 1 20 20 C 1.34776 * 120.00047 * 63.92827 * 19 8 2 21 21 O 1.21282 * 120.00129 * 354.66480 * 20 19 8 22 22 C 1.50698 * 119.99801 * 174.67207 * 20 19 8 23 23 C 1.53005 * 109.47091 * 180.02562 * 22 20 19 24 24 C 1.54275 * 110.02949 * 292.16575 * 23 22 20 25 25 C 1.54888 * 104.19171 * 217.10644 * 24 23 22 26 26 C 1.54887 * 102.75310 * 37.94084 * 25 24 23 27 27 C 1.53875 * 110.03419 * 174.99884 * 23 22 20 28 28 H 1.08995 * 109.47047 * 300.00481 * 1 2 3 29 29 H 1.09000 * 109.46729 * 60.00310 * 1 2 3 30 30 H 1.08995 * 109.47480 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47128 * 60.00433 * 4 2 1 32 32 H 1.09000 * 109.47222 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.47139 * 60.00027 * 5 4 2 34 34 H 1.08995 * 109.47505 * 179.97438 * 5 4 2 35 35 H 1.08995 * 109.47042 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.46980 * 300.00001 * 6 5 4 37 37 H 1.09000 * 109.47175 * 180.02562 * 7 6 5 38 38 H 1.09000 * 109.47321 * 59.99861 * 7 6 5 39 39 H 1.09003 * 109.47039 * 305.52013 * 9 8 2 40 40 H 1.08998 * 109.47276 * 65.52311 * 9 8 2 41 41 H 0.97000 * 119.99624 * 355.03620 * 10 9 8 42 42 H 0.96999 * 119.99536 * 180.02562 * 14 13 11 43 43 H 0.97000 * 119.99562 * 243.92963 * 19 8 2 44 44 H 1.08999 * 109.47680 * 60.00113 * 22 20 19 45 45 H 1.08997 * 109.47166 * 299.99669 * 22 20 19 46 46 H 1.09001 * 110.01686 * 53.60415 * 23 22 20 47 47 H 1.09000 * 110.48238 * 335.78101 * 24 23 22 48 48 H 1.08999 * 110.48808 * 98.42785 * 24 23 22 49 49 H 1.08999 * 110.75359 * 279.62331 * 25 24 23 50 50 H 1.09007 * 110.75474 * 156.26036 * 25 24 23 51 51 H 1.09000 * 110.48494 * 203.37623 * 26 25 24 52 52 H 1.08997 * 110.59333 * 80.79033 * 26 25 24 53 53 H 1.08998 * 110.03239 * 238.57061 * 27 23 22 54 54 H 1.08999 * 110.02914 * 359.95445 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5300 -2.1638 -1.2491 6 6 2.0399 -2.8850 0.0002 7 6 1.5299 -2.1637 1.2494 8 6 2.0399 -0.7212 1.2493 9 6 1.5299 0.0001 2.4985 10 7 2.1237 -0.6094 3.6910 11 6 1.8929 -0.0643 4.9258 12 1 1.2734 0.8153 5.0205 13 6 2.4550 -0.6421 6.0558 14 7 3.2096 -1.7144 5.9404 15 14 2.1407 0.1020 7.7400 16 1 0.9263 -0.5126 8.3339 17 1 3.3077 -0.1566 8.6211 18 1 1.9381 1.5668 7.6041 19 7 3.5049 -0.7208 1.2497 20 6 4.1784 0.4439 1.3300 21 8 3.5756 1.4960 1.3043 22 6 5.6805 0.4388 1.4515 23 6 6.1911 1.8793 1.5253 24 6 5.9621 2.5909 0.1758 25 6 7.2114 3.4901 0.0039 26 6 8.3501 2.6049 0.5684 27 6 7.7094 1.8882 1.7749 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6768 -0.2075 -2.1391 32 1 3.1300 -0.7217 -1.2489 33 1 0.4400 -2.1638 -1.2492 34 1 1.8930 -2.6776 -2.1392 35 1 1.6762 -3.9125 0.0004 36 1 3.1300 -2.8850 0.0002 37 1 1.8935 -2.6772 2.1394 38 1 0.4399 -2.1636 1.2493 39 1 1.8103 1.0523 2.4504 40 1 0.4444 -0.0847 2.5493 41 1 2.6803 -1.3992 3.6059 42 1 3.6021 -2.1184 6.7301 43 1 3.9902 -1.5587 1.1921 44 1 6.1137 -0.0564 0.5825 45 1 5.9700 -0.0956 2.3562 46 1 5.6783 2.4164 2.3232 47 1 5.9014 1.8633 -0.6336 48 1 5.0574 3.1978 0.2132 49 1 7.1104 4.4068 0.5850 50 1 7.3831 3.7157 -1.0487 51 1 9.1882 3.2221 0.8923 52 1 8.6771 1.8796 -0.1766 53 1 7.9336 2.4304 2.6936 54 1 8.0824 0.8664 1.8443 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753529420.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:23 Heat of formation + Delta-G solvation = -78.174446 kcal Electronic energy + Delta-G solvation = -30112.978368 eV Core-core repulsion = 26468.452976 eV Total energy + Delta-G solvation = -3644.525392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.83098 -39.83930 -38.29522 -36.44783 -34.67032 -33.46923 -32.76860 -32.21081 -30.84590 -29.50875 -27.94680 -26.93209 -26.08083 -24.71134 -23.03110 -22.27850 -21.56710 -21.30808 -20.37004 -19.46916 -18.88354 -18.22208 -17.01730 -16.82071 -16.49323 -16.27545 -16.01360 -15.81545 -15.33882 -15.12177 -14.71837 -14.65019 -14.53355 -14.17280 -14.12558 -13.92052 -13.70374 -13.56752 -13.10033 -12.94472 -12.87270 -12.84079 -12.63354 -12.45681 -12.24499 -12.11492 -12.05013 -11.93861 -11.90790 -11.83076 -11.79719 -11.61461 -11.48319 -11.29013 -11.18041 -11.10267 -10.99181 -10.87756 -10.21975 -9.68674 -8.92515 -7.95615 -5.20772 1.42471 1.43485 1.52069 1.92226 2.44029 2.54861 3.37246 3.63626 3.73596 3.76186 3.82127 3.84737 3.88847 4.10600 4.16405 4.26052 4.36473 4.38871 4.46185 4.48053 4.55633 4.59080 4.60305 4.66815 4.71920 4.75048 4.81462 4.85358 4.87940 4.92551 4.93279 4.99400 5.01550 5.13095 5.15152 5.17935 5.18240 5.20499 5.27210 5.27731 5.29785 5.41650 5.42433 5.46803 5.47586 5.50795 5.55738 5.58343 5.64281 5.87872 6.27693 6.82997 7.34802 7.55854 8.10591 8.39419 9.27299 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.007713 B = 0.005762 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3629.139525 B = 4858.581054 C = 7513.564980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.060 0.940 4 C -0.101 4.101 5 C -0.114 4.114 6 C -0.112 4.112 7 C -0.116 4.116 8 C 0.191 3.809 9 C 0.144 3.856 10 N -0.727 5.727 11 C -0.241 4.241 12 H 0.058 0.942 13 C -0.066 4.066 14 N -0.961 5.961 15 Si 0.965 3.035 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.281 1.281 19 N -0.707 5.707 20 C 0.514 3.486 21 O -0.568 6.568 22 C -0.128 4.128 23 C -0.076 4.076 24 C -0.105 4.105 25 C -0.124 4.124 26 C -0.116 4.116 27 C -0.121 4.121 28 H 0.037 0.963 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.016 0.984 40 H 0.015 0.985 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.404 0.596 44 H 0.118 0.882 45 H 0.085 0.915 46 H 0.039 0.961 47 H 0.067 0.933 48 H 0.044 0.956 49 H 0.058 0.942 50 H 0.078 0.922 51 H 0.073 0.927 52 H 0.078 0.922 53 H 0.056 0.944 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.836 0.053 -19.182 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.078 0.922 4 C -0.138 4.138 5 C -0.151 4.151 6 C -0.149 4.149 7 C -0.154 4.154 8 C 0.105 3.895 9 C 0.017 3.983 10 N -0.370 5.370 11 C -0.373 4.373 12 H 0.076 0.924 13 C -0.259 4.259 14 N -0.612 5.612 15 Si 0.794 3.206 16 H -0.212 1.212 17 H -0.217 1.217 18 H -0.206 1.206 19 N -0.358 5.358 20 C 0.302 3.698 21 O -0.447 6.447 22 C -0.168 4.168 23 C -0.095 4.095 24 C -0.143 4.143 25 C -0.162 4.162 26 C -0.153 4.153 27 C -0.158 4.158 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.210 0.790 42 H 0.060 0.940 43 H 0.239 0.761 44 H 0.136 0.864 45 H 0.104 0.896 46 H 0.057 0.943 47 H 0.086 0.914 48 H 0.063 0.937 49 H 0.076 0.924 50 H 0.097 0.903 51 H 0.091 0.909 52 H 0.097 0.903 53 H 0.075 0.925 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.332 0.918 -19.059 19.812 hybrid contribution -0.070 -0.037 1.790 1.792 sum 5.262 0.881 -17.269 18.074 Atomic orbital electron populations 1.21945 0.94402 1.02558 1.01426 1.21334 0.96309 0.99518 0.94074 0.92199 1.21432 1.00284 0.96078 0.96055 1.21555 1.01259 0.94647 0.97645 1.21521 1.00929 0.99190 0.93287 1.21747 1.01591 0.93109 0.98967 1.20332 0.79779 0.95994 0.93443 1.21155 0.94743 0.95910 0.86519 1.42276 1.59884 1.33391 1.01446 1.19483 1.24058 1.07804 0.85974 0.92424 1.25353 1.00875 0.98907 1.00773 1.69772 1.38781 1.23774 1.28914 0.85272 0.76948 0.77778 0.80577 1.21158 1.21712 1.20616 1.45899 1.06465 1.08808 1.74673 1.20960 0.90868 0.83442 0.74492 1.90590 1.70990 1.32462 1.50688 1.21846 0.90886 0.99317 1.04756 1.21455 0.96042 0.93845 0.98135 1.22275 0.97711 0.98445 0.95853 1.22523 0.94511 0.97843 1.01297 1.22328 0.97416 0.98618 0.96970 1.22225 0.93112 1.01595 0.98893 0.94373 0.91361 0.91003 0.91375 0.92538 0.91266 0.90358 0.90532 0.91590 0.93141 0.90504 0.96633 0.96756 0.78955 0.94011 0.76060 0.86367 0.89631 0.94277 0.91444 0.93747 0.92354 0.90335 0.90862 0.90340 0.92514 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 8.15 71.98 0.59 -3.23 16 2 C -0.09 -2.67 2.10 -10.80 -0.02 -2.69 16 3 H 0.06 2.12 6.28 -2.39 -0.02 2.10 16 4 C -0.10 -2.21 5.29 30.59 0.16 -2.05 16 5 C -0.11 -2.06 5.65 30.59 0.17 -1.89 16 6 C -0.11 -2.31 5.75 30.59 0.18 -2.13 16 7 C -0.12 -3.37 4.40 30.60 0.13 -3.24 16 8 C 0.19 6.30 0.09 3.60 0.00 6.30 16 9 C 0.14 6.45 4.27 86.38 0.37 6.81 16 10 N -0.73 -38.25 5.18 -343.44 -1.78 -40.03 16 11 C -0.24 -14.26 9.99 84.03 0.84 -13.42 16 12 H 0.06 3.44 7.83 -2.91 -0.02 3.42 16 13 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 14 N -0.96 -58.66 13.06 21.65 0.28 -58.38 16 15 Si 0.96 48.02 29.55 68.60 2.03 50.04 16 16 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 17 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 18 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 19 N -0.71 -22.20 3.57 -422.92 -1.51 -23.71 16 20 C 0.51 17.84 7.02 87.66 0.62 18.46 16 21 O -0.57 -23.80 11.13 -3.03 -0.03 -23.84 16 22 C -0.13 -3.56 4.83 29.85 0.14 -3.42 16 23 C -0.08 -2.14 2.55 -10.06 -0.03 -2.17 16 24 C -0.11 -2.71 5.43 31.67 0.17 -2.54 16 25 C -0.12 -2.51 6.91 31.88 0.22 -2.29 16 26 C -0.12 -2.07 6.83 31.67 0.22 -1.85 16 27 C -0.12 -2.69 6.46 31.32 0.20 -2.49 16 28 H 0.04 1.15 6.56 -2.39 -0.02 1.13 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.67 4.81 -2.39 -0.01 1.66 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.27 7.60 -2.39 -0.02 1.25 16 33 H 0.07 1.22 6.43 -2.38 -0.02 1.20 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.28 6.79 -2.38 -0.02 1.26 16 37 H 0.05 1.75 7.11 -2.39 -0.02 1.73 16 38 H 0.08 2.21 6.43 -2.39 -0.02 2.19 16 39 H 0.02 0.80 6.25 -2.39 -0.01 0.79 16 40 H 0.01 0.66 6.74 -2.39 -0.02 0.65 16 41 H 0.38 20.23 6.47 -92.71 -0.60 19.63 16 42 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 43 H 0.40 10.77 7.20 -92.71 -0.67 10.10 16 44 H 0.12 2.41 8.00 -2.39 -0.02 2.39 16 45 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 46 H 0.04 1.42 7.92 -2.39 -0.02 1.40 16 47 H 0.07 1.58 7.76 -2.39 -0.02 1.57 16 48 H 0.04 1.38 7.66 -2.39 -0.02 1.36 16 49 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 51 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 52 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 53 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 54 H 0.08 1.52 7.67 -2.39 -0.02 1.50 16 Total: -1.00 -70.59 390.26 3.03 -67.56 By element: Atomic # 1 Polarization: 44.02 SS G_CDS: -0.38 Total: 43.64 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 4.43 Total: -15.29 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -3.01 Total: -122.12 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.03 Total: -23.84 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.04 kcal Total: -70.59 3.03 -67.56 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753529420.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.614 kcal (2) G-P(sol) polarization free energy of solvation -70.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds