Wall clock time and date at job start Tue Mar 31 2020 15:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46993 * 2 1 4 4 C 1.52996 * 109.47274 * 239.99634 * 2 1 3 5 5 C 1.53005 * 109.47093 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47262 * 59.99538 * 5 4 2 7 7 C 1.53004 * 109.47331 * 300.00436 * 6 5 4 8 8 C 1.52999 * 109.46979 * 59.99970 * 7 6 5 9 9 C 1.53006 * 109.46863 * 180.02562 * 8 7 6 10 10 N 1.46503 * 109.46870 * 294.33442 * 9 8 7 11 11 C 1.36937 * 119.99826 * 176.57804 * 10 9 8 12 12 H 1.07993 * 120.00146 * 359.97438 * 11 10 9 13 13 C 1.38817 * 119.99669 * 179.97438 * 11 10 9 14 14 N 1.31617 * 119.99955 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99603 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47416 * 59.99787 * 15 13 11 17 17 H 1.48502 * 109.46748 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47027 * 299.99527 * 15 13 11 19 19 N 1.46493 * 109.47478 * 60.00124 * 8 7 6 20 20 C 1.34768 * 120.00221 * 171.17782 * 19 8 7 21 21 O 1.21281 * 120.00373 * 354.15587 * 20 19 8 22 22 C 1.50705 * 120.00402 * 174.15202 * 20 19 8 23 23 C 1.53001 * 109.47497 * 180.02562 * 22 20 19 24 24 C 1.54267 * 110.02991 * 292.91109 * 23 22 20 25 25 C 1.54968 * 104.15612 * 217.13813 * 24 23 22 26 26 C 1.54888 * 102.77940 * 37.88610 * 25 24 23 27 27 C 1.53874 * 110.03240 * 175.69371 * 23 22 20 28 28 H 1.08998 * 109.47713 * 297.51482 * 1 2 3 29 29 H 1.09005 * 109.46790 * 57.51035 * 1 2 3 30 30 H 1.08998 * 109.47128 * 177.50455 * 1 2 3 31 31 H 1.09002 * 109.47082 * 299.99529 * 4 2 1 32 32 H 1.08991 * 109.47278 * 60.00043 * 4 2 1 33 33 H 1.08992 * 109.47152 * 180.02562 * 5 4 2 34 34 H 1.09005 * 109.46612 * 299.99928 * 5 4 2 35 35 H 1.09005 * 109.46990 * 60.00063 * 6 5 4 36 36 H 1.09002 * 109.47420 * 180.02562 * 6 5 4 37 37 H 1.09005 * 109.46779 * 299.99756 * 7 6 5 38 38 H 1.09005 * 109.47102 * 179.97438 * 7 6 5 39 39 H 1.08997 * 109.47287 * 54.33166 * 9 8 7 40 40 H 1.09000 * 109.46926 * 174.33496 * 9 8 7 41 41 H 0.97003 * 120.00291 * 356.56812 * 10 9 8 42 42 H 0.97006 * 119.99459 * 180.02562 * 14 13 11 43 43 H 0.97009 * 119.99765 * 351.46000 * 19 8 7 44 44 H 1.09002 * 109.47198 * 300.00928 * 22 20 19 45 45 H 1.09004 * 109.46883 * 59.99973 * 22 20 19 46 46 H 1.08997 * 110.01432 * 54.29587 * 23 22 20 47 47 H 1.09003 * 110.48918 * 335.77827 * 24 23 22 48 48 H 1.08997 * 110.48701 * 98.43153 * 24 23 22 49 49 H 1.09003 * 110.71770 * 279.57431 * 25 24 23 50 50 H 1.08998 * 110.92431 * 156.30118 * 25 24 23 51 51 H 1.09001 * 110.48686 * 203.40473 * 26 25 24 52 52 H 1.08996 * 110.48525 * 80.76770 * 26 25 24 53 53 H 1.08997 * 110.02919 * 238.57400 * 27 23 22 54 54 H 1.08998 * 110.03167 * 359.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5701 -0.7218 -1.2488 6 6 4.0796 -1.4432 0.0005 7 6 3.5695 -0.7219 1.2497 8 6 2.0395 -0.7215 1.2493 9 6 1.5294 0.0004 2.4982 10 7 1.9028 -0.7641 3.6909 11 6 1.6128 -0.2746 4.9365 12 1 1.1093 0.6751 5.0397 13 6 1.9662 -0.9993 6.0665 14 7 2.5793 -2.1571 5.9407 15 14 1.5700 -0.3319 7.7656 16 1 0.1017 -0.1544 7.8978 17 1 2.0485 -1.2876 8.7967 18 1 2.2457 0.9771 7.9532 19 7 1.5507 -2.1025 1.2492 20 6 0.2386 -2.3530 1.4278 21 8 -0.5212 -1.4460 1.6940 22 6 -0.2846 -3.7602 1.2968 23 6 -1.7944 -3.7682 1.5450 24 6 -2.0896 -3.4145 3.0173 25 6 -3.2959 -4.3138 3.3885 26 6 -2.9790 -5.6357 2.6462 27 6 -2.3598 -5.1797 1.3090 28 1 -0.3634 0.4747 0.9114 29 1 -0.3633 0.5520 -0.8669 30 1 -0.3633 -1.0267 -0.0447 31 1 1.6768 -1.7490 -1.2490 32 1 1.6768 -0.2076 -2.1391 33 1 3.9334 -1.2353 -2.1389 34 1 3.9337 0.3058 -1.2486 35 1 3.7159 -2.4708 0.0004 36 1 5.1696 -1.4432 0.0011 37 1 3.9332 0.3057 1.2498 38 1 3.9321 -1.2362 2.1398 39 1 1.9735 0.9944 2.5502 40 1 0.4442 0.0894 2.4487 41 1 2.3552 -1.6172 3.5982 42 1 2.8259 -2.6637 6.7304 43 1 2.1721 -2.8369 1.1245 44 1 -0.0798 -4.1320 0.2928 45 1 0.2077 -4.4005 2.0287 46 1 -2.2849 -3.0539 0.8838 47 1 -1.2308 -3.6500 3.6459 48 1 -2.3548 -2.3614 3.1108 49 1 -4.2270 -3.8798 3.0240 50 1 -3.3430 -4.4769 4.4652 51 1 -3.8930 -6.2027 2.4698 52 1 -2.2639 -6.2304 3.2147 53 1 -3.1254 -5.1503 0.5337 54 1 -1.5588 -5.8588 1.0171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753529421.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:27 Heat of formation + Delta-G solvation = -56.283594 kcal Electronic energy + Delta-G solvation = -30495.357403 eV Core-core repulsion = 26851.781270 eV Total energy + Delta-G solvation = -3643.576133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.00795 -39.64587 -38.17994 -36.35197 -34.53180 -33.70477 -33.05189 -32.11162 -30.70582 -29.47980 -27.75123 -26.73942 -26.33616 -24.68496 -22.39647 -22.18307 -21.55735 -21.38432 -20.32698 -19.92994 -19.14936 -18.13507 -17.21992 -16.77421 -16.43732 -16.20798 -15.83123 -15.59010 -15.23902 -14.94209 -14.87365 -14.81416 -14.59356 -14.22644 -14.10201 -13.92958 -13.56595 -13.34798 -13.02847 -12.87502 -12.80352 -12.68305 -12.65153 -12.44899 -12.22926 -12.10657 -11.97394 -11.88980 -11.82611 -11.81486 -11.76928 -11.54222 -11.49837 -11.27401 -11.21145 -11.02967 -10.92413 -10.72878 -10.13433 -9.45883 -8.82502 -7.92697 -5.15932 1.41455 1.44297 1.50089 2.02550 2.47841 2.56781 3.39985 3.70690 3.75863 3.77533 3.82065 3.85187 3.89883 4.14773 4.18480 4.23226 4.39454 4.41596 4.48186 4.55350 4.58814 4.62345 4.63199 4.70359 4.74335 4.79646 4.82735 4.89136 4.94003 4.95743 4.96883 4.99667 5.06073 5.13651 5.16773 5.19879 5.24558 5.26398 5.27887 5.32619 5.39769 5.43549 5.46439 5.47117 5.52074 5.53006 5.59718 5.60639 5.76916 5.92965 6.30563 6.90747 7.37491 7.65944 8.16495 8.43885 9.30206 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.007164 B = 0.006869 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3907.456049 B = 4075.273246 C = 7041.620366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.067 0.933 4 C -0.101 4.101 5 C -0.113 4.113 6 C -0.111 4.111 7 C -0.115 4.115 8 C 0.190 3.810 9 C 0.134 3.866 10 N -0.723 5.723 11 C -0.235 4.235 12 H 0.058 0.942 13 C -0.070 4.070 14 N -0.963 5.963 15 Si 0.963 3.037 16 H -0.287 1.287 17 H -0.290 1.290 18 H -0.280 1.280 19 N -0.707 5.707 20 C 0.503 3.497 21 O -0.542 6.542 22 C -0.129 4.129 23 C -0.067 4.067 24 C -0.111 4.111 25 C -0.127 4.127 26 C -0.120 4.120 27 C -0.113 4.113 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.000 1.000 40 H 0.044 0.956 41 H 0.375 0.625 42 H 0.249 0.751 43 H 0.403 0.597 44 H 0.119 0.881 45 H 0.087 0.913 46 H 0.067 0.933 47 H 0.033 0.967 48 H 0.038 0.962 49 H 0.070 0.930 50 H 0.055 0.945 51 H 0.080 0.920 52 H 0.061 0.939 53 H 0.077 0.923 54 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.358 -6.344 -18.624 19.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.085 0.915 4 C -0.139 4.139 5 C -0.150 4.150 6 C -0.149 4.149 7 C -0.153 4.153 8 C 0.104 3.896 9 C 0.007 3.993 10 N -0.366 5.366 11 C -0.367 4.367 12 H 0.076 0.924 13 C -0.262 4.262 14 N -0.614 5.614 15 Si 0.792 3.208 16 H -0.214 1.214 17 H -0.216 1.216 18 H -0.206 1.206 19 N -0.360 5.360 20 C 0.291 3.709 21 O -0.420 6.420 22 C -0.169 4.169 23 C -0.086 4.086 24 C -0.149 4.149 25 C -0.164 4.164 26 C -0.158 4.158 27 C -0.150 4.150 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.018 0.982 40 H 0.062 0.938 41 H 0.208 0.792 42 H 0.058 0.942 43 H 0.239 0.761 44 H 0.137 0.863 45 H 0.105 0.895 46 H 0.086 0.914 47 H 0.052 0.948 48 H 0.057 0.943 49 H 0.089 0.911 50 H 0.073 0.927 51 H 0.099 0.901 52 H 0.079 0.921 53 H 0.096 0.904 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.962 -5.561 -18.346 19.575 hybrid contribution 0.356 0.262 1.798 1.852 sum -3.606 -5.299 -16.548 17.746 Atomic orbital electron populations 1.22288 0.94817 1.02648 0.99426 1.21429 0.95975 0.98953 0.94336 0.91491 1.21484 0.95848 1.00618 0.95932 1.21520 0.94942 1.00868 0.97701 1.21523 1.00777 0.99348 0.93241 1.21702 0.92881 1.01726 0.98971 1.20349 0.93706 0.82105 0.93482 1.21382 0.98823 0.92776 0.86340 1.42194 1.70495 1.23413 1.00478 1.19448 1.29694 1.02114 0.85471 0.92446 1.25327 1.02556 0.97678 1.00659 1.69769 1.47861 1.15129 1.28645 0.85371 0.77485 0.77296 0.80599 1.21431 1.21634 1.20640 1.45839 1.08182 1.07920 1.74090 1.20863 0.82270 0.91668 0.76102 1.90696 1.58073 1.46989 1.46262 1.21871 0.96899 0.93147 1.04950 1.21435 0.93547 0.97785 0.95828 1.22266 0.97541 0.98599 0.96486 1.22537 0.97712 0.96380 0.99797 1.22343 1.00994 0.96316 0.96110 1.22197 1.00673 0.94520 0.97624 0.94260 0.94269 0.91481 0.91674 0.91234 0.90098 0.92093 0.91234 0.90874 0.91462 0.93288 0.98203 0.93831 0.79168 0.94222 0.76107 0.86294 0.89452 0.91409 0.94807 0.94292 0.91131 0.92660 0.90097 0.92052 0.90387 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 7.29 71.98 0.52 -3.65 16 2 C -0.09 -2.40 2.07 -10.79 -0.02 -2.43 16 3 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 4 C -0.10 -2.06 5.05 30.59 0.15 -1.91 16 5 C -0.11 -2.01 5.92 30.59 0.18 -1.83 16 6 C -0.11 -2.30 5.75 30.59 0.18 -2.12 16 7 C -0.11 -3.40 4.70 30.60 0.14 -3.26 16 8 C 0.19 6.16 0.32 3.61 0.00 6.16 16 9 C 0.13 5.96 4.44 86.38 0.38 6.35 16 10 N -0.72 -38.26 5.13 -343.44 -1.76 -40.03 16 11 C -0.23 -14.01 9.99 84.03 0.84 -13.17 16 12 H 0.06 3.44 7.83 -2.91 -0.02 3.41 16 13 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 14 N -0.96 -59.63 13.06 21.65 0.28 -59.35 16 15 Si 0.96 48.70 29.55 68.60 2.03 50.73 16 16 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 17 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 18 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 19 N -0.71 -21.11 3.49 -422.93 -1.48 -22.58 16 20 C 0.50 16.33 5.66 87.66 0.50 16.83 16 21 O -0.54 -21.47 8.26 -3.03 -0.03 -21.50 16 22 C -0.13 -3.22 4.83 29.85 0.14 -3.08 16 23 C -0.07 -1.74 2.55 -10.07 -0.03 -1.76 16 24 C -0.11 -3.69 5.40 31.70 0.17 -3.52 16 25 C -0.13 -3.34 6.91 31.91 0.22 -3.12 16 26 C -0.12 -2.48 6.83 31.67 0.22 -2.27 16 27 C -0.11 -2.15 6.46 31.32 0.20 -1.95 16 28 H 0.04 1.48 5.55 -2.39 -0.01 1.47 16 29 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.07 2.12 4.78 -3.37 -0.02 2.10 16 31 H 0.06 1.30 7.60 -2.39 -0.02 1.28 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.07 1.30 6.70 -2.38 -0.02 1.29 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.05 1.75 7.30 -2.38 -0.02 1.74 16 39 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.04 2.16 4.27 -2.39 -0.01 2.15 16 41 H 0.38 20.42 6.60 -92.71 -0.61 19.81 16 42 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 43 H 0.40 10.18 7.08 -92.70 -0.66 9.52 16 44 H 0.12 2.07 8.14 -2.39 -0.02 2.06 16 45 H 0.09 2.28 8.02 -2.38 -0.02 2.26 16 46 H 0.07 1.87 7.95 -2.39 -0.02 1.85 16 47 H 0.03 1.32 7.77 -2.39 -0.02 1.30 16 48 H 0.04 1.53 7.63 -2.39 -0.02 1.51 16 49 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 52 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 53 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 54 H 0.08 1.29 7.67 -2.39 -0.02 1.27 16 Total: -1.00 -70.61 389.51 2.92 -67.68 By element: Atomic # 1 Polarization: 43.89 SS G_CDS: -0.40 Total: 43.49 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 4.27 Total: -18.44 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -2.96 Total: -121.96 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.03 Total: -21.50 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.03 Total: 50.73 kcal Total: -70.61 2.92 -67.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753529421.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.400 kcal (2) G-P(sol) polarization free energy of solvation -70.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds