Wall clock time and date at job start Tue Mar 31 2020 15:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46874 * 2 1 4 4 C 1.52999 * 109.47181 * 120.00307 * 2 1 3 5 5 C 1.53001 * 109.47222 * 59.99894 * 4 2 1 6 6 C 1.52998 * 109.46732 * 60.00421 * 5 4 2 7 7 C 1.53005 * 109.47140 * 299.99314 * 6 5 4 8 8 C 1.53001 * 109.46747 * 60.00696 * 7 6 5 9 9 C 1.52999 * 109.47222 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.46794 * 296.13543 * 9 8 7 11 11 C 1.36944 * 119.99649 * 175.03318 * 10 9 8 12 12 H 1.08002 * 119.99888 * 359.97438 * 11 10 9 13 13 C 1.38807 * 119.99572 * 179.72506 * 11 10 9 14 14 N 1.31617 * 120.00533 * 0.27259 * 13 11 10 15 15 Si 1.86804 * 119.99614 * 180.27446 * 13 11 10 16 16 H 1.48491 * 109.47328 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46992 * 120.00239 * 15 13 11 18 18 H 1.48511 * 109.46800 * 239.99691 * 15 13 11 19 19 N 1.46503 * 109.47210 * 59.99873 * 8 7 6 20 20 C 1.34779 * 119.99891 * 181.89183 * 19 8 7 21 21 O 1.21280 * 120.00099 * 355.45022 * 20 19 8 22 22 C 1.50700 * 119.99792 * 175.44269 * 20 19 8 23 23 C 1.53007 * 109.47021 * 180.02562 * 22 20 19 24 24 C 1.54262 * 110.03057 * 292.90838 * 23 22 20 25 25 C 1.54965 * 104.16123 * 217.13600 * 24 23 22 26 26 C 1.54888 * 102.77399 * 37.89057 * 25 24 23 27 27 C 1.53873 * 110.03227 * 175.69248 * 23 22 20 28 28 H 1.08997 * 109.46569 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46791 * 299.99761 * 1 2 3 30 30 H 1.09003 * 109.46636 * 59.99849 * 1 2 3 31 31 H 1.09004 * 109.47046 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46742 * 299.99689 * 4 2 1 33 33 H 1.08995 * 109.47174 * 179.97438 * 5 4 2 34 34 H 1.08996 * 109.47217 * 300.00289 * 5 4 2 35 35 H 1.08995 * 109.47870 * 59.99774 * 6 5 4 36 36 H 1.09000 * 109.47027 * 180.02562 * 6 5 4 37 37 H 1.08996 * 109.47518 * 300.00566 * 7 6 5 38 38 H 1.08997 * 109.47462 * 180.02562 * 7 6 5 39 39 H 1.08999 * 109.47113 * 176.13616 * 9 8 7 40 40 H 1.09000 * 109.47292 * 56.13712 * 9 8 7 41 41 H 0.96995 * 120.00173 * 355.02516 * 10 9 8 42 42 H 0.96995 * 120.00272 * 180.02562 * 14 13 11 43 43 H 0.96991 * 120.00097 * 1.88643 * 19 8 7 44 44 H 1.08993 * 109.47337 * 299.99947 * 22 20 19 45 45 H 1.08998 * 109.46768 * 60.00318 * 22 20 19 46 46 H 1.09002 * 110.01357 * 54.29941 * 23 22 20 47 47 H 1.09005 * 110.49096 * 335.78549 * 24 23 22 48 48 H 1.09005 * 110.48662 * 98.42443 * 24 23 22 49 49 H 1.08992 * 110.71877 * 279.57654 * 25 24 23 50 50 H 1.08998 * 110.92340 * 156.29633 * 25 24 23 51 51 H 1.08998 * 110.48551 * 203.40577 * 26 25 24 52 52 H 1.09006 * 110.60108 * 80.82106 * 26 25 24 53 53 H 1.08996 * 110.03324 * 238.57145 * 27 23 22 54 54 H 1.09002 * 110.03079 * 359.95050 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2492 6 6 2.0401 -2.8850 -0.0001 7 6 1.5300 -2.1637 -1.2494 8 6 2.0401 -0.7212 -1.2493 9 6 1.5306 -0.0001 -2.4988 10 7 2.0939 -0.6350 -3.6928 11 6 1.6989 -0.2238 -4.9379 12 1 0.9717 0.5682 -5.0396 13 6 2.2369 -0.8216 -6.0693 14 7 3.1227 -1.7871 -5.9454 15 14 1.7038 -0.2554 -7.7678 16 1 0.7048 0.8352 -7.6351 17 1 2.8851 0.2431 -8.5168 18 1 1.0972 -1.3952 -8.5016 19 7 3.5051 -0.7212 -1.2493 20 6 4.1789 0.4454 -1.2108 21 8 3.5754 1.4962 -1.2594 22 6 5.6824 0.4440 -1.1071 23 6 6.1931 1.8861 -1.0810 24 6 5.9309 2.5642 -2.4416 25 6 7.1761 3.4591 -2.6653 26 6 8.3285 2.5886 -2.1057 27 6 7.7168 1.9019 -0.8671 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.1301 -0.7209 1.2494 32 1 1.6767 -0.2074 2.1392 33 1 1.8937 -2.6778 2.1388 34 1 0.4401 -2.1638 1.2491 35 1 3.1301 -2.8850 -0.0002 36 1 1.6765 -3.9125 -0.0004 37 1 0.4401 -2.1637 -1.2494 38 1 1.8930 -2.6777 -2.1394 39 1 1.8362 1.0456 -2.4649 40 1 0.4428 -0.0596 -2.5346 41 1 2.7468 -1.3466 -3.6015 42 1 3.4990 -2.2045 -6.7360 43 1 3.9901 -1.5607 -1.2770 44 1 5.9829 -0.0640 -0.1908 45 1 6.1053 -0.0761 -1.9665 46 1 5.6985 2.4427 -0.2849 47 1 5.8514 1.8170 -3.2312 48 1 5.0267 3.1714 -2.3973 49 1 7.0878 4.3898 -2.1050 50 1 7.3247 3.6611 -3.7261 51 1 9.1733 3.2139 -1.8169 52 1 8.6389 1.8450 -2.8399 53 1 7.9618 2.4668 0.0322 54 1 8.0923 0.8822 -0.7811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753529422.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:31 Heat of formation + Delta-G solvation = -78.082232 kcal Electronic energy + Delta-G solvation = -30125.585447 eV Core-core repulsion = 26481.064054 eV Total energy + Delta-G solvation = -3644.521393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.84361 -39.83412 -38.28859 -36.45381 -34.68104 -33.47311 -32.77708 -32.21936 -30.83962 -29.50959 -27.95335 -26.90972 -26.11196 -24.70490 -23.04662 -22.28445 -21.59684 -21.31076 -20.34511 -19.47449 -18.88515 -18.21149 -17.00722 -16.71824 -16.58712 -16.25249 -16.16538 -15.70445 -15.37988 -15.09376 -14.73425 -14.68435 -14.61977 -14.18497 -14.01374 -13.91067 -13.65146 -13.55568 -13.19481 -12.99461 -12.87220 -12.78460 -12.64297 -12.46353 -12.25789 -12.07968 -12.05458 -11.94328 -11.92080 -11.82598 -11.81918 -11.61101 -11.52748 -11.26157 -11.19734 -11.08954 -10.97385 -10.89714 -10.22804 -9.69951 -8.91579 -7.95841 -5.20853 1.41990 1.42839 1.52632 1.92312 2.41740 2.54427 3.37109 3.63100 3.72641 3.74263 3.82366 3.85035 3.88995 4.11907 4.15322 4.26131 4.36734 4.38241 4.44778 4.48518 4.56057 4.59086 4.60181 4.66964 4.71984 4.77838 4.81783 4.85565 4.88417 4.91099 4.92228 4.96745 4.99447 5.11747 5.15375 5.15683 5.19690 5.20641 5.26192 5.28015 5.29865 5.41443 5.42109 5.46777 5.47249 5.50897 5.55178 5.57292 5.63610 5.87796 6.27496 6.82061 7.34562 7.54914 8.11044 8.39353 9.27359 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.007166 B = 0.006238 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3906.270678 B = 4487.588355 C = 7442.846569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.061 0.939 4 C -0.101 4.101 5 C -0.114 4.114 6 C -0.112 4.112 7 C -0.115 4.115 8 C 0.191 3.809 9 C 0.145 3.855 10 N -0.727 5.727 11 C -0.240 4.240 12 H 0.060 0.940 13 C -0.068 4.068 14 N -0.962 5.962 15 Si 0.965 3.035 16 H -0.275 1.275 17 H -0.294 1.294 18 H -0.288 1.288 19 N -0.708 5.708 20 C 0.510 3.490 21 O -0.568 6.568 22 C -0.130 4.130 23 C -0.068 4.068 24 C -0.114 4.114 25 C -0.125 4.125 26 C -0.121 4.121 27 C -0.113 4.113 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.010 0.990 40 H 0.018 0.982 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.404 0.596 44 H 0.121 0.879 45 H 0.089 0.911 46 H 0.067 0.933 47 H 0.035 0.965 48 H 0.040 0.960 49 H 0.071 0.929 50 H 0.058 0.942 51 H 0.081 0.919 52 H 0.061 0.939 53 H 0.078 0.922 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.328 0.536 18.521 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.079 0.921 4 C -0.139 4.139 5 C -0.151 4.151 6 C -0.149 4.149 7 C -0.153 4.153 8 C 0.105 3.895 9 C 0.017 3.983 10 N -0.370 5.370 11 C -0.372 4.372 12 H 0.078 0.922 13 C -0.261 4.261 14 N -0.613 5.613 15 Si 0.794 3.206 16 H -0.200 1.200 17 H -0.221 1.221 18 H -0.215 1.215 19 N -0.359 5.359 20 C 0.298 3.702 21 O -0.447 6.447 22 C -0.170 4.170 23 C -0.087 4.087 24 C -0.152 4.152 25 C -0.163 4.163 26 C -0.159 4.159 27 C -0.151 4.151 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.028 0.972 40 H 0.036 0.964 41 H 0.210 0.790 42 H 0.059 0.941 43 H 0.239 0.761 44 H 0.139 0.861 45 H 0.108 0.892 46 H 0.085 0.915 47 H 0.054 0.946 48 H 0.059 0.941 49 H 0.090 0.910 50 H 0.077 0.923 51 H 0.100 0.900 52 H 0.080 0.920 53 H 0.097 0.903 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.785 1.383 18.395 19.332 hybrid contribution -0.174 -0.125 -1.819 1.831 sum 5.610 1.257 16.576 17.545 Atomic orbital electron populations 1.21942 0.94379 1.02540 1.01440 1.21322 0.96378 0.99592 0.94016 0.92068 1.21440 1.00348 0.96056 0.96018 1.21550 1.01202 0.94677 0.97645 1.21520 1.01001 0.99090 0.93293 1.21723 1.01480 0.93163 0.98925 1.20334 0.79807 0.95961 0.93416 1.21172 0.95085 0.95420 0.86604 1.42282 1.50911 1.43263 1.00567 1.19549 1.18259 1.14080 0.85349 0.92213 1.25369 1.00256 0.99638 1.00809 1.69776 1.34016 1.28861 1.28661 0.85199 0.77202 0.77413 0.80743 1.19967 1.22078 1.21478 1.45950 1.06494 1.08707 1.74791 1.21094 0.91041 0.83361 0.74681 1.90607 1.71062 1.32588 1.50461 1.21890 0.90345 0.99518 1.05212 1.21448 0.96518 0.93700 0.97073 1.22308 0.97703 0.98366 0.96845 1.22530 0.94706 0.98422 1.00643 1.22350 0.97446 0.98682 0.97377 1.22204 0.92494 1.01880 0.98506 0.91070 0.91291 0.94384 0.92415 0.91319 0.90335 0.91347 0.91496 0.90703 0.90713 0.93199 0.97166 0.96377 0.79032 0.94056 0.76068 0.86109 0.89220 0.91481 0.94621 0.94108 0.91021 0.92322 0.90047 0.91997 0.90340 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 8.15 71.98 0.59 -3.25 16 2 C -0.09 -2.69 2.01 -10.79 -0.02 -2.71 16 3 H 0.06 2.15 6.19 -2.39 -0.01 2.13 16 4 C -0.10 -2.20 5.29 30.59 0.16 -2.03 16 5 C -0.11 -2.07 5.65 30.59 0.17 -1.90 16 6 C -0.11 -2.34 5.75 30.60 0.18 -2.16 16 7 C -0.11 -3.39 4.36 30.60 0.13 -3.26 16 8 C 0.19 6.32 0.09 3.60 0.00 6.32 16 9 C 0.14 6.49 4.45 86.38 0.38 6.88 16 10 N -0.73 -38.43 5.12 -343.45 -1.76 -40.19 16 11 C -0.24 -14.22 9.99 84.03 0.84 -13.38 16 12 H 0.06 3.55 7.83 -2.91 -0.02 3.53 16 13 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 14 N -0.96 -59.01 13.06 21.65 0.28 -58.73 16 15 Si 0.96 48.10 29.55 68.60 2.03 50.12 16 16 H -0.27 -13.25 7.11 99.48 0.71 -12.55 16 17 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 18 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 19 N -0.71 -21.99 3.44 -422.91 -1.45 -23.44 16 20 C 0.51 17.06 7.02 87.66 0.62 17.67 16 21 O -0.57 -23.32 11.06 -3.03 -0.03 -23.35 16 22 C -0.13 -3.29 4.83 29.85 0.14 -3.15 16 23 C -0.07 -1.76 2.55 -10.07 -0.03 -1.79 16 24 C -0.11 -3.66 5.40 31.69 0.17 -3.49 16 25 C -0.13 -3.13 6.91 31.91 0.22 -2.91 16 26 C -0.12 -2.41 6.83 31.67 0.22 -2.19 16 27 C -0.11 -2.13 6.46 31.32 0.20 -1.93 16 28 H 0.07 1.68 4.81 -2.39 -0.01 1.67 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 1.16 6.52 -2.39 -0.02 1.14 16 31 H 0.06 1.27 7.61 -2.38 -0.02 1.26 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.22 6.43 -2.39 -0.02 1.21 16 35 H 0.07 1.31 6.90 -2.39 -0.02 1.29 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 2.21 6.43 -2.39 -0.02 2.19 16 38 H 0.05 1.77 7.21 -2.39 -0.02 1.75 16 39 H 0.01 0.54 6.27 -2.39 -0.01 0.52 16 40 H 0.02 0.84 6.65 -2.39 -0.02 0.82 16 41 H 0.38 20.32 6.57 -92.71 -0.61 19.71 16 42 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 43 H 0.40 10.84 7.39 -92.71 -0.68 10.16 16 44 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.09 2.35 8.02 -2.39 -0.02 2.33 16 46 H 0.07 1.85 7.95 -2.39 -0.02 1.83 16 47 H 0.03 1.32 7.77 -2.38 -0.02 1.30 16 48 H 0.04 1.53 7.63 -2.38 -0.02 1.51 16 49 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 52 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 53 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 54 H 0.08 1.27 7.67 -2.39 -0.02 1.26 16 Total: -1.00 -71.30 390.36 3.10 -68.20 By element: Atomic # 1 Polarization: 44.65 SS G_CDS: -0.41 Total: 44.24 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 4.44 Total: -16.85 kcal Atomic # 7 Polarization: -119.43 SS G_CDS: -2.93 Total: -122.36 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.03 Total: -23.35 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.12 kcal Total: -71.30 3.10 -68.20 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753529422.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.881 kcal (2) G-P(sol) polarization free energy of solvation -71.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds